View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_high_44 (Length: 252)
Name: NF3021_high_44
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 47198156 - 47198381
Alignment:
| Q |
1 |
caatgttaaaatattaaaccaaatacatgaatttttattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgttctatg |
100 |
Q |
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| T |
47198156 |
caatgttaaaatattaaaccaaatacataaatttttattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgttctatg |
47198255 |
T |
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| Q |
101 |
ctccagtattgttcagcactctgggatttcacaatgatgcttcactttactcatcagtgatcacaggaggtgtgaatgtcctctgcactttagtgtctgt |
200 |
Q |
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| T |
47198256 |
ctccagtattgttcagcactctgggatttcacaatgatgcttcactttactcatcagtgatcacaggaggtgtgaatgtcctatgcactttagtgtctgt |
47198355 |
T |
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| Q |
201 |
ctattttgtggacaaagttgggagaa |
226 |
Q |
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| T |
47198356 |
atattttgtggacaaagctgggagaa |
47198381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 47185672 - 47185850
Alignment:
| Q |
56 |
aggtcttccagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactcatc |
155 |
Q |
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| T |
47185672 |
aggtcttccaacaattcaccggcatcaatgcaatcatgttctatgctccagtattgttcaacactttgggatttcacaatgatgcttcactttactcatc |
47185771 |
T |
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| Q |
156 |
agtgatcacaggaggtgtgaatgtcctctgcactttagtgtctgtctattttgtggacaaagttgggagaaaggtactt |
234 |
Q |
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| T |
47185772 |
agtgatcacaggaggtgtgaatgtcctctgcaccttagtgtctgtatattttgtggacaaagttgggagaagggtactt |
47185850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 47212308 - 47212396
Alignment:
| Q |
64 |
cagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactc |
152 |
Q |
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||||||| ||| ||||||||||| || ||||||||||||||||| |||||| ||| | |||||| | ||||||||| |||||||||| |
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| T |
47212308 |
cagcaattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggatttaagaatgatgctgcactttactc |
47212396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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