View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3021_high_48 (Length: 250)
Name: NF3021_high_48
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_high_48 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35222290 - 35222529
Alignment:
| Q |
1 |
caaataatgaataagtatggcgacaaaggatctccttgtcttagtcctcgacctggaatactaggaccaattgcctcgtcattaactattaccgagtagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35222290 |
caaataatgaataagtatggcgacaaaggatctccttgtcttagtcctcgacctggaataataggaccaactgcctcgtcattaactattaccgagtagt |
35222389 |
T |
|
| Q |
101 |
cggtagtctccacacacatcattatccacttaacccattgatgagaaaaacccattttaagcataacacacttaagatagttctagtctatcctatcata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35222390 |
cggtagtctccacacacatcattatccacttaacccattgatgagaaaaacccattttaagcataacacacttaagatagttccagtctatcctatcata |
35222489 |
T |
|
| Q |
201 |
tgccttactaatatccagcttaaaagccacatcacctttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35222490 |
tgccttactaatatccagcttaaaagccgcatcacctttg |
35222529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 79 - 238
Target Start/End: Original strand, 19936087 - 19936246
Alignment:
| Q |
79 |
tcattaactattaccgagtagtcggtagtctccacacacatcattatccacttaacccattgatgagaaaaacccattttaagcataacacacttaagat |
178 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||||||||||||||||| || ||||| ||| |||||| ||||||||||||||||| || || |||| |
|
|
| T |
19936087 |
tcattaacaataaccgagtagtcgacagtctccacacacatcattatccatttgacccactgaatagaaaatcccattttaagcataacgcatttgagat |
19936186 |
T |
|
| Q |
179 |
agttctagtctatcctatcatatgccttactaatatccagcttaaaagccacatcacctt |
238 |
Q |
| |
|
| ||| ||||||| || ||||| || || || ||||| ||||| ||||||||||| |||| |
|
|
| T |
19936187 |
aattccagtctattctgtcataagctttgcttatatcaagcttgaaagccacatcccctt |
19936246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7807547 - 7807507
Alignment:
| Q |
1 |
caaataatgaataagtatggcgacaaaggatctccttgtct |
41 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
7807547 |
caaataataaataagtatggcgacaagggatccccttgtct |
7807507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University