View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_high_50 (Length: 249)

Name: NF3021_high_50
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_high_50
NF3021_high_50
[»] chr5 (19 HSPs)
chr5 (1-237)||(10977089-10977325)
chr5 (126-237)||(14356199-14356310)
chr5 (57-141)||(15856653-15856738)
chr5 (49-143)||(20539252-20539347)
chr5 (52-143)||(33173865-33173958)
chr5 (57-149)||(38471409-38471503)
chr5 (57-197)||(223346-223488)
chr5 (52-154)||(1010261-1010363)
chr5 (52-154)||(8521372-8521474)
chr5 (52-122)||(30857917-30857987)
chr5 (85-149)||(14210291-14210355)
chr5 (52-149)||(32757943-32758042)
chr5 (52-149)||(22308699-22308797)
chr5 (57-118)||(2167450-2167511)
chr5 (57-118)||(5383062-5383123)
chr5 (52-129)||(9169704-9169781)
chr5 (59-96)||(9378625-9378662)
chr5 (57-118)||(40058138-40058199)
chr5 (60-124)||(22165106-22165170)
[»] chr2 (22 HSPs)
chr2 (1-237)||(9472691-9472926)
chr2 (57-237)||(15850475-15850655)
chr2 (26-121)||(1149117-1149212)
chr2 (57-149)||(35799632-35799725)
chr2 (159-237)||(28109685-28109764)
chr2 (48-119)||(42366982-42367053)
chr2 (52-149)||(2277369-2277467)
chr2 (52-149)||(28562710-28562808)
chr2 (57-149)||(8537132-8537225)
chr2 (57-141)||(26205133-26205218)
chr2 (52-149)||(34147254-34147353)
chr2 (59-237)||(34513364-34513544)
chr2 (52-119)||(18971227-18971294)
chr2 (52-134)||(7753442-7753524)
chr2 (49-118)||(14509320-14509390)
chr2 (60-141)||(29424523-29424605)
chr2 (79-147)||(1083132-1083201)
chr2 (57-118)||(10367359-10367420)
chr2 (52-121)||(21664920-21664989)
chr2 (57-118)||(25570805-25570866)
chr2 (58-118)||(12959640-12959700)
chr2 (50-122)||(17460613-17460685)
[»] chr3 (26 HSPs)
chr3 (16-218)||(5123178-5123380)
chr3 (58-193)||(53624219-53624354)
chr3 (57-138)||(43346361-43346443)
chr3 (57-141)||(21128045-21128130)
chr3 (57-169)||(45421229-45421342)
chr3 (52-171)||(20314642-20314762)
chr3 (54-141)||(48254800-48254888)
chr3 (52-172)||(20336534-20336655)
chr3 (52-149)||(21515512-21515609)
chr3 (66-141)||(21074188-21074264)
chr3 (57-147)||(3209869-3209960)
chr3 (57-146)||(48867336-48867426)
chr3 (59-147)||(35372062-35372151)
chr3 (52-143)||(10731002-10731094)
chr3 (79-147)||(52719793-52719861)
chr3 (52-123)||(46495612-46495683)
chr3 (96-141)||(47765597-47765643)
chr3 (50-123)||(7270439-7270512)
chr3 (58-142)||(12106697-12106782)
chr3 (79-147)||(41263782-41263851)
chr3 (53-118)||(53420436-53420501)
chr3 (52-129)||(55423511-55423588)
chr3 (52-139)||(18442366-18442454)
chr3 (52-139)||(19487440-19487528)
chr3 (56-132)||(35633346-35633422)
chr3 (52-147)||(40244303-40244399)
[»] chr4 (28 HSPs)
chr4 (16-237)||(668468-668689)
chr4 (52-149)||(13533162-13533259)
chr4 (57-237)||(43419191-43419371)
chr4 (57-147)||(34438526-34438616)
chr4 (57-141)||(56296313-56296398)
chr4 (52-148)||(27847795-27847891)
chr4 (52-149)||(40723345-40723443)
chr4 (67-141)||(26393038-26393113)
chr4 (67-141)||(56000417-56000492)
chr4 (52-149)||(6348272-6348370)
chr4 (57-197)||(38555130-38555272)
chr4 (52-237)||(56085465-56085650)
chr4 (67-141)||(3533519-3533594)
chr4 (53-143)||(4714139-4714230)
chr4 (52-149)||(2162727-2162825)
chr4 (63-145)||(33231519-33231601)
chr4 (93-198)||(53401336-53401442)
chr4 (69-149)||(1794548-1794629)
chr4 (53-141)||(29663758-29663847)
chr4 (95-148)||(52633598-52633651)
chr4 (26-90)||(36614185-36614249)
chr4 (95-141)||(306735-306780)
chr4 (57-138)||(17494247-17494329)
chr4 (52-149)||(37884178-37884276)
chr4 (79-147)||(2311098-2311167)
chr4 (57-118)||(11114915-11114976)
chr4 (52-129)||(28657039-28657116)
chr4 (93-145)||(50547066-50547118)
[»] chr6 (14 HSPs)
chr6 (26-121)||(136719-136814)
chr6 (52-149)||(7312184-7312281)
chr6 (32-121)||(30231576-30231665)
chr6 (52-143)||(24757000-24757092)
chr6 (50-147)||(29380306-29380404)
chr6 (52-149)||(32505786-32505884)
chr6 (50-147)||(23397257-23397355)
chr6 (57-118)||(293575-293636)
chr6 (57-118)||(14328709-14328770)
chr6 (57-118)||(14421719-14421780)
chr6 (49-134)||(9927716-9927802)
chr6 (57-143)||(27082081-27082168)
chr6 (52-121)||(15728848-15728917)
chr6 (57-149)||(22298724-22298816)
[»] chr7 (12 HSPs)
chr7 (52-149)||(9662138-9662235)
chr7 (57-237)||(35484126-35484306)
chr7 (26-121)||(26135733-26135828)
chr7 (57-237)||(26406245-26406425)
chr7 (53-118)||(7354623-7354688)
chr7 (57-148)||(28325192-28325284)
chr7 (52-141)||(16755989-16756079)
chr7 (52-147)||(11501297-11501393)
chr7 (67-141)||(45719745-45719820)
chr7 (57-142)||(25154846-25154932)
chr7 (26-142)||(3332064-3332181)
chr7 (57-118)||(46458648-46458709)
[»] chr8 (25 HSPs)
chr8 (52-147)||(32693947-32694043)
chr8 (67-141)||(24069357-24069432)
chr8 (57-141)||(13513540-13513625)
chr8 (57-141)||(13603073-13603158)
chr8 (57-141)||(34617106-34617191)
chr8 (67-141)||(7770809-7770884)
chr8 (67-141)||(7796719-7796794)
chr8 (67-141)||(7816000-7816075)
chr8 (67-141)||(39515329-39515404)
chr8 (52-147)||(42100009-42100105)
chr8 (58-149)||(38696908-38696999)
chr8 (79-209)||(44076202-44076332)
chr8 (52-154)||(42877736-42877838)
chr8 (57-118)||(13366985-13367046)
chr8 (57-122)||(39220799-39220864)
chr8 (57-149)||(44606259-44606352)
chr8 (94-149)||(6397942-6397998)
chr8 (52-123)||(42872117-42872188)
chr8 (79-138)||(45395112-45395171)
chr8 (50-147)||(32797256-32797354)
chr8 (53-141)||(14840807-14840896)
chr8 (81-141)||(38696455-38696516)
chr8 (67-147)||(45279812-45279893)
chr8 (26-86)||(28403543-28403603)
chr8 (62-118)||(36070303-36070359)
[»] chr1 (25 HSPs)
chr1 (57-149)||(19466109-19466201)
chr1 (58-149)||(51300160-51300252)
chr1 (57-148)||(36509931-36510022)
chr1 (52-118)||(16757456-16757522)
chr1 (52-149)||(48096932-48097030)
chr1 (52-154)||(15746662-15746764)
chr1 (67-147)||(16963966-16964047)
chr1 (65-149)||(30535570-30535654)
chr1 (58-122)||(38965195-38965259)
chr1 (52-143)||(41873877-41873969)
chr1 (53-134)||(34258627-34258709)
chr1 (79-143)||(7161229-7161294)
chr1 (56-117)||(47762015-47762076)
chr1 (50-149)||(51042240-51042343)
chr1 (57-118)||(51726779-51726840)
chr1 (49-149)||(835390-835489)
chr1 (66-149)||(21507197-21507280)
chr1 (51-120)||(9226145-9226214)
chr1 (57-141)||(9633895-9633980)
chr1 (113-238)||(15743416-15743540)
chr1 (57-118)||(21277114-21277175)
chr1 (52-237)||(46467264-46467449)
chr1 (58-118)||(8092719-8092779)
chr1 (57-149)||(13642461-13642553)
chr1 (157-237)||(45570539-45570618)
[»] scaffold2071 (1 HSPs)
scaffold2071 (58-149)||(581-673)
[»] scaffold0178 (1 HSPs)
scaffold0178 (57-149)||(1331-1422)
[»] scaffold0148 (1 HSPs)
scaffold0148 (53-149)||(14820-14916)
[»] scaffold0034 (1 HSPs)
scaffold0034 (53-147)||(109648-109743)
[»] scaffold0031 (1 HSPs)
scaffold0031 (69-142)||(125137-125212)
[»] scaffold0018 (2 HSPs)
scaffold0018 (52-143)||(151966-152058)
scaffold0018 (51-147)||(151452-151549)
[»] scaffold0128 (1 HSPs)
scaffold0128 (79-149)||(22125-22196)
[»] scaffold0122 (1 HSPs)
scaffold0122 (57-118)||(16065-16126)
[»] scaffold0201 (1 HSPs)
scaffold0201 (52-143)||(21245-21337)
[»] scaffold0077 (1 HSPs)
scaffold0077 (52-147)||(52709-52805)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 10977089 - 10977325
Alignment:
Q  1 cacgtttcgatctttcaattatacatccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtc 100  Q
    ||||||||| ||  |||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||    
T  10977089 cacgtttcggtccctcaattttacgtccgtcagtcaaattggtcatgttccgttaattttaacttcaaatgtctaagatggaccaacattgtatgtggtc 10977188  T
Q  101 taccatagaccttattaatttttaaattttaaccatttgatctatttttgcaaacaagaaccgttggatcacagatgtctattgtatcgtacggtgaacc 200  Q
    ||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||||| |||||||||||||| | |||||||||||||| |||| ||||||    
T  10977189 taccatagaccatattaattttttaattttatccatttgatctatttttgaaaacaggaaccgttggatcatatatgtctattgtatcatacgatgaacc 10977288  T
Q  201 atcaacaaccaattattttctcctttcttcatcttct 237  Q
    ||||||||| |||||||||| ||||| ||||||||||    
T  10977289 atcaacaactaattattttcccctttattcatcttct 10977325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 14356310 - 14356199
Alignment:
Q  126 attttaaccatttgatctatttttgcaaacaagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaattattttctcctt 225  Q
    ||||||||||||||||||||||||  ||||||| | ||||| |||||| | |||||||||||  || |||||| ||||||||||  ||||||||||||||    
T  14356310 attttaaccatttgatctatttttcaaaacaaggatcgttgtatcacaaaagtctattgtattatatggtgaatcatcaacaacttattattttctcctt 14356211  T
Q  226 tcttcatcttct 237  Q
    |||| |||||||    
T  14356210 tctttatcttct 14356199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 15856653 - 15856738
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    ||||||||  |||||| |||| ||||||||||||||| |||||| ||||||||||||| ||| ||||| |||||||| ||||||||    
T  15856653 ttttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagaccttactaagttttttaattttaatcatttgat 15856738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 20539347 - 20539252
Alignment:
Q  49 tccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgatct 143  Q
    |||||||| ||||||  ||||| |||||| |||||||| ||| || |||||||| |||||||||||||||| |||| ||||| |||| ||||||||    
T  20539347 tccgttaagtttaacaccaaatatataaggtggaccaatattgtaggtggtctatcatagaccttattaatttttttaatttaaaccgtttgatct 20539252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 33173958 - 33173865
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa--tttttaaattttaaccatttgatct 143  Q
    ||||| ||||||| ||||||| || | ||||||||| |||  ||||||||||||||||| | |||||  |||||||||||||||| ||||||||    
T  33173958 gttaagtttaaccccaaatgtctatggtggaccaaccttaagagtggtctaccatagacttcattaatttttttaaattttaaccgtttgatct 33173865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 38471409 - 38471503
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat--ttttaaattttaaccatttgatctattttt 149  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||||||||||||| |||||| |  ||||  ||||||||| |||||||| |||||    
T  38471409 ttttaaccttaaatgtttaaggtgaaccaactttataggtggtctaccatagactttattatttattttttattttaaccgtttgatcttttttt 38471503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 197
Target Start/End: Original strand, 223346 - 223488
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctatttt-tgcaaa 154  Q
    |||||| || |||||| |||| || |||||| || || |||||||||||||||| ||||| ||||||| ||||| |||| |||||||| |||| |  |||    
T  223346 ttttaatcttaaatgtctaaggtgaaccaactttgtaggtggtctaccatagactttattaaattttttaatttaaaccgtttgatcttttttatttaaa 223445  T
Q  155 caagaaccgttggatcacagatgtctattgtatcgtacggtga 197  Q
      |||||| |||||| ||  ||||||||| |||| ||||||||    
T  223446 gtagaacctttggattactcatgtctattttatcttacggtga 223488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 1010363 - 1010261
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttttgc 151  Q
    ||||| ||||||| ||||||| || | ||||||||| |||  |||||||  ||||||| | |||||||| || ||||| |||| |||||||||||||| |    
T  1010363 gttaactttaaccccaaatgtgtatggtggaccaaccttaagagtggtccgccatagatcctattaattatttaatttcaaccctttgatctatttttcc 1010264  T
Q  152 aaa 154  Q
    |||    
T  1010263 aaa 1010261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 8521372 - 8521474
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttttgc 151  Q
    ||||| ||||||| ||||||| || | ||||||||| |||  | ||||| |||||||| | |||||||| || ||||| |||| |||||||||||||| |    
T  8521372 gttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccatagatcctattaattatttaatttcaaccctttgatctattttttc 8521471  T
Q  152 aaa 154  Q
    |||    
T  8521472 aaa 8521474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 30857917 - 30857987
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt 122  Q
    ||||| |||||| | |||||| || ||||||||||| ||| |||||||||| || ||||||||||||||||    
T  30857917 gttaactttaactttaaatgtctatgatggaccaaccttaaaagtggtctatcagagaccttattaatttt 30857987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 14210291 - 14210355
Alignment:
Q  85 aacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 149  Q
    |||||||||||||||| | ||||||||| ||||| ||||  ||||||||| |||||||| |||||    
T  14210291 aacattataagtggtccatcatagacctcattaaattttttattttaaccttttgatcttttttt 14210355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 32757943 - 32758042
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa--tttttaaattttaaccatttgatctattttt 149  Q
    ||||| ||||||| ||||||| || | |||||||||||  ||  | ||| |||||||||||||||||  ||||| |||||||||| |||||||| |||||    
T  32757943 gttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaatttttttcaattttaaccctttgatcttttttt 32758042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 22308797 - 22308699
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgatctattttt 149  Q
    ||||| ||||||| ||||||| || | |||||| || |||  ||||||| ||||||||| ||||||| ||||| ||| | ||||||||||||| |||||    
T  22308797 gttaagtttaaccccaaatgtctatggtggacctaccttaagagtggtccaccatagacattattaaattttttaatgtaaaccatttgatctgttttt 22308699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 2167511 - 2167450
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    ||||||||| |||||| |||| || |||||| |||||  ||||| |||||||||||||||||    
T  2167511 ttttaaccttaaatgtctaaggtgaaccaactttatagatggtccaccatagaccttattaa 2167450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 5383062 - 5383123
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    ||||||||| |||||| |||| || | |||| ||||| |||||| |||||||||||||||||    
T  5383062 ttttaaccttaaatgtctaaggtgaatcaactttataggtggtccaccatagaccttattaa 5383123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 9169704 - 9169781
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattt 129  Q
    ||||| ||||||| ||||||| ||   |||||||| ||||||  ||||| | |||||||| |||||||||||||||||    
T  9169704 gttaactttaaccccaaatgtctatagtggaccaatattatagatggtccatcatagaccgtattaatttttaaattt 9169781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 9378662 - 9378625
Alignment:
Q  59 ttaacctcaaatgtataagatggaccaacattataagt 96  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  9378662 ttaacctcaaatgtctaaggtggaccaacattataagt 9378625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 40058138 - 40058199
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    |||||| || |||||| |||| || |||||| |||||||| ||| |||||||||||||||||    
T  40058138 ttttaatcttaaatgtctaaggtgaaccaactttataagtagtccaccatagaccttattaa 40058199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 22165106 - 22165170
Alignment:
Q  60 taacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattttta 124  Q
    ||||||||||||| |  | ||||||||||||||| |||||| |||| |||| | |||||||||||    
T  22165106 taacctcaaatgtctttggtggaccaacattataggtggtccaccaaagacgtcattaattttta 22165170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 9472691 - 9472926
Alignment:
Q  1 cacgtttcgatctttcaattatacatccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtc 100  Q
    ||||||||| ||  |||||||||| | ||||||||||||||||| ||||||||||||||||||  ||||| | ||||||||||||||||| || ||||||    
T  9472691 cacgtttcggtccctcaattatacgttcgtcagtcaaattggtcctgttccgttaattttaactccaaatatctaagatggaccaacattgtatgtggtc 9472790  T
Q  101 taccatagaccttattaatttttaaattttaaccatttgatctatttttgcaaacaagaaccgttggatcacagatgtctattgtatcgtacggtgaacc 200  Q
    ||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||||| ||||| || ||||| | |||||||||||||| |||| ||||||    
T  9472791 taccatagaccatattaattttttaattttatccatttgatctatttttgaaaacaggaaccatttgatcatatatgtctattgtatc-tacgatgaacc 9472889  T
Q  201 atcaacaaccaattattttctcctttcttcatcttct 237  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  9472890 atcaacaactaattattttcccctttcttcatcttct 9472926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 15850655 - 15850475
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatt-tttgcaaac 155  Q
    ||||||||  |||||| |||| || |||||||||||| |||||| |||||||| |||| ||  |||| |||||||||| |||||||| || |||  |||     
T  15850655 ttttaaccctaaatgtctaaggtgaaccaacattataggtggtccaccatagatcttaatagatttttaattttaaccctttgatcttttgtttataaat 15850556  T
Q  156 aagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaattattttctcctttcttcatcttct 237  Q
     ||||| ||| ||||| | ||||||||||||| |||  |||||||  |||||||||||| ||||| | ||||||||||||||    
T  15850555 gagaacagttagatcatacatgtctattgtattgtatagtgaaccgccaacaaccaatt-ttttcccatttcttcatcttct 15850475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 1149212 - 1149117
Alignment:
Q  26 tccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt 121  Q
    ||||| ||||||||| ||| | |||||||||||||||| |||||| | ||| ||||||| ||||  ||| ||||| ||||||||||||||||||||    
T  1149212 tccgttagtcaaattagtcttattccgttaattttaacatcaaatatctaatatggaccgacatggtaaatggtccaccatagaccttattaattt 1149117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 35799632 - 35799725
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattttta-aattttaaccatttgatctattttt 149  Q
    ||||||||| |||||| |||| || | |||| |||||||||||||||||||||| ||||||| | ||| |||||||||| |||||||| |||||    
T  35799632 ttttaaccttaaatgtctaaggtgaatcaactttataagtggtctaccatagactttattaaatgttataattttaaccgtttgatcttttttt 35799725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 28109764 - 28109685
Alignment:
Q  159 aaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaattattttctcc-tttcttcatcttct 237  Q
    ||||||||||||| | |||||| ||||||| |||||||||| ||||||| | |||| |||||||| ||||||||||||||    
T  28109764 aaccgttggatcatatatgtctgttgtatcatacggtgaacaatcaacacctaatttttttctccatttcttcatcttct 28109685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 42366982 - 42367053
Alignment:
Q  48 ttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat 119  Q
    ||||||||||| ||||| | ||||| |||||||||||| ||||  | ||||||||| |||||||||||||||    
T  42366982 ttccgttaattctaacccctaatgtgtaagatggaccatcattgaaggtggtctacgatagaccttattaat 42367053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 2277467 - 2277369
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgatctattttt 149  Q
    ||||| ||||||| ||||||| || | |||||||||||  ||  | ||| |||||||||||||||||| |||| |||||||||| |||||||| |||||    
T  2277467 gttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaattttttcaattttaaccctttgatcttttttt 2277369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 28562808 - 28562710
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctattttt 149  Q
    ||||| ||||| | ||||| |||| | |||||||||||||||  | ||| ||||||||||||||| ||||||  |||||||||| |||||||| |||||    
T  28562808 gttaagtttaatcccaaatatatatggtggaccaacattatagatagtccaccatagaccttattaaattttccaattttaaccctttgatcttttttt 28562710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 8537132 - 8537225
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatctattttt 149  Q
    ||||||||| |||||| ||||||| |||||| || ||||||||  ||||||||| |||||||    || ||||||||||||||||||| |||||    
T  8537132 ttttaaccttaaatgtctaagatgtaccaactttttaagtggttcaccatagactttattaaaaaatttaattttaaccatttgatcttttttt 8537225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 26205133 - 26205218
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    ||||||| |||||||| |||| || ||||   ||| |||||||| ||||||  ||||||||| |||||||||||||||||||||||    
T  26205133 ttttaacatcaaatgtctaaggtgaaccatacttaaaagtggtccaccatatgccttattaattttttaaattttaaccatttgat 26205218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 34147254 - 34147353
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa--tttttaaattttaaccatttgatctattttt 149  Q
    ||||| ||||||| ||||||| || | |||||||||||  ||  | ||| |||||||||||||||||  ||||| |||||||||| |||||||| |||||    
T  34147254 gttaactttaaccccaaatgtctatggtggaccaacatggtagatagtccaccatagaccttattaatttttttcaattttaaccctttgatcttttttt 34147353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 237
Target Start/End: Complemental strand, 34513544 - 34513364
Alignment:
Q  59 ttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgatctatttttgcaaacaa 157  Q
    |||||| |||||||||| | | ||||||| |||  |||| || |||||||||||||||||| |||| ||||| |||| |||||||| |||||  |||  |    
T  34513544 ttaaccccaaatgtatatggttgaccaaccttaagagtgatccaccatagaccttattaatttttttaatttaaaccgtttgatctgttttttaaaaaga 34513445  T
Q  158 gaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaattattttc-tcctttcttcatcttct 237  Q
      | | |||||| |    ||||||||||| | ||||||| |||| ||||||| |||| ||||| | |||||||||||||||    
T  34513444 tgatcattggattatgcgtgtctattgtaacttacggtgtaccaacaacaactaatttttttctttctttcttcatcttct 34513364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 18971294 - 18971227
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat 119  Q
    |||||||||||||  |||| |||||| |||||||||||| ||  ||||||||  ||||||||||||||    
T  18971294 gttaattttaacccaaaatatataaggtggaccaacattgtagatggtctactgtagaccttattaat 18971227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 7753524 - 7753442
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaacc 134  Q
    ||||| ||||||  |||||||||| | |||| ||||||| || ||| || |||||||||| ||||||||||| ||||| ||||    
T  7753524 gttaactttaactccaaatgtatatggtggatcaacattgtaggtgatccaccatagaccgtattaattttttaatttaaacc 7753442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 14509320 - 14509390
Alignment:
Q  49 tccgttaatttt-aacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    |||||||||||| ||||| |||||| |||| |  |||||| ||||| |||||| |||||||||||||||||    
T  14509320 tccgttaatttttaaccttaaatgtctaaggtaaaccaactttataggtggtccaccatagaccttattaa 14509390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 29424605 - 29424523
Alignment:
Q  60 taacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    |||| |||||||| ||||||| ||||   ||| | |||||| | ||||||||||||||| |||||||||||||||| ||||||    
T  29424605 taacatcaaatgtctaagatgaaccatgtttaaaggtggtccatcatagaccttattaaatttttaaattttaaccttttgat 29424523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 1083132 - 1083201
Alignment:
Q  79 tggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 147  Q
    |||| |||| ||| ||||||||||   ||||||||||||||||| | ||||||||||||| |||||||||    
T  1083132 tggatcaaccttaaaagtggtctattgtagaccttattaattttgttaattttaaccattcgatctattt 1083201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 10367359 - 10367420
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||| || ||||||||||||||    
T  10367359 ttttaaccttaaatgtctaaggtgaaccaactttataggtggtccacaatagaccttattaa 10367420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 21664920 - 21664989
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt 121  Q
    ||||| |||||| |||||||| || | |||||||||||| || |||||| | |||||||||| |||||||    
T  21664920 gttaagtttaacttcaaatgtctatggtggaccaacattgtaggtggtcaatcatagaccttgttaattt 21664989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 25570866 - 25570805
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    |||||| || |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  25570866 ttttaaacttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 25570805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 12959700 - 12959640
Alignment:
Q  58 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    |||||||| |||||| |||| || |||||| ||||| |||||| || ||||||||||||||    
T  12959700 tttaaccttaaatgtctaaggtgaaccaactttataggtggtccacaatagaccttattaa 12959640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 17460685 - 17460613
Alignment:
Q  50 ccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt 122  Q
    ||||||| |||||| | |||||| || | ||||||||  ||| |||||||||| | |||||||||||||||||    
T  17460685 ccgttaactttaactttaaatgtctatggtggaccaatcttaaaagtggtctatcgtagaccttattaatttt 17460613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 5123380 - 5123178
Alignment:
Q  16 caattatacatccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttat 115  Q
    ||||||||| | ||| ||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||    
T  5123380 caattatacgttcgttagttaaattggtcatgttctgttaattttaacctcaaatgtttaagatggaccaacattgtatgtggtctaccatagaccttat 5123281  T
Q  116 taatttttaaattttaaccatttgatctatttttgcaaacaagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaatta 215  Q
    |||||||| |||||||||||||||||||||||||  | ||| ||||||||||||| |||| |||||||||||| | | |||||||||||||||| |||||    
T  5123280 taattttttaattttaaccatttgatctattttttaacacatgaaccgttggatcgcagaggtctattgtatcattcagtgaaccatcaacaactaatta 5123181  T
Q  216 ttt 218  Q
    |||    
T  5123180 ttt 5123178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 193
Target Start/End: Complemental strand, 53624354 - 53624219
Alignment:
Q  58 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttttgcaaacaa 157  Q
    ||||||| |||||||||| | |||||||||||||||  | ||| |||||||||||||||||||||| |||||||||| |||||||| |||||   ||  |    
T  53624354 tttaaccccaaatgtatatggtggaccaacattatagatagtccaccatagaccttattaatttttcaattttaaccttttgatctttttttaagaaaga 53624255  T
Q  158 gaaccgttggatcacagatgtctattgtatcgtacg 193  Q
    |||||||||||| |||  |||||||| |||| ||||    
T  53624254 gaaccgttggattacacgtgtctattttatcttacg 53624219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 43346443 - 43346361
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagacctta-ttaatttttaaattttaaccattt 138  Q
    ||||||||  |||||| |||| ||||||||||||||| |||||| ||||||||||||| | ||||||| ||||||||||||||    
T  43346443 ttttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagaccttactaaattttttaattttaaccattt 43346361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 21128045 - 21128130
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    ||||||||  |||||| |||| ||||||||||||||| |||||| |||||||||||||  || ||||| |||||||||||||||||    
T  21128045 ttttaaccctaaatgtctaaggtggaccaacattataggtggtccaccatagaccttacaaagttttttaattttaaccatttgat 21128130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 169
Target Start/End: Original strand, 45421229 - 45421342
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgatctatttttgcaaac 155  Q
    ||||||||  |||||| ||||||| |||||||||| | |||||| |||||||||||||| ||| |||| ||||| ||||| ||||||| |||||| ||      
T  45421229 ttttaaccataaatgtctaagatgaaccaacattagaggtggtccaccatagaccttataaatgttttcaatttaaaccacttgatctttttttgaaata 45421328  T
Q  156 aagaaccgttggat 169  Q
     |||||||||||||    
T  45421329 gagaaccgttggat 45421342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 20314762 - 20314642
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatctatttttg 150  Q
    ||||| ||||||  ||||||| || | | |||||||||||||  | ||| |||||||||||||||||||| || ||||| ||||||||||| |||||||     
T  20314762 gttaagtttaactccaaatgtctatgttagaccaacattatagatagtccaccatagaccttattaatttatttaatttaaaccatttgatttatttttt 20314663  T
Q  151 caaacaagaaccgttggatca 171  Q
    ||||  || ||||||||||||    
T  20314662 caaaagaggaccgttggatca 20314642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 48254888 - 48254800
Alignment:
Q  54 taattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    |||||||||| | |||||| |||| ||||||||||||||| |||||| |||||| |||||| ||| ||||| ||||||||||| |||||    
T  48254888 taattttaacattaaatgtctaaggtggaccaacattataggtggtccaccataaaccttactaagttttttaattttaaccacttgat 48254800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 172
Target Start/End: Complemental strand, 20336655 - 20336534
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatctatttttg 150  Q
    ||||| ||||||  ||||||| || | |||||||||||||||  | ||| |||||||||||||||||||| || ||||| |||||||  || |||||||     
T  20336655 gttaagtttaactccaaatgtctatgttggaccaacattatagatagtccaccatagaccttattaatttatttaatttaaaccattcaatttatttttt 20336556  T
Q  151 caaacaagaaccgttggatcac 172  Q
     |||  ||||||||||||||||    
T  20336555 taaaagagaaccgttggatcac 20336534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 21515609 - 21515512
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 149  Q
    ||||| ||||||  ||||||||| || |||| ||| ||| || |||||| |||||| ||||||||||||||| ||||  | |||||||||||||||||    
T  21515609 gttaactttaactccaaatgtattaggtggatcaatattgtaggtggtccaccatataccttattaattttttaattccagccatttgatctattttt 21515512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 21074264 - 21074188
Alignment:
Q  66 caaatgtataagatggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgat 141  Q
    |||||||||| | |||||||||||||||  | ||| |||||||||||||||||| |||| |||||||||| ||||||    
T  21074264 caaatgtatatggtggaccaacattatagatagtccaccatagaccttattaattttttcaattttaaccctttgat 21074188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 3209960 - 3209869
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 147  Q
    ||||||| ||||||||||| | ||||||||| ||| || | ||| | | || |||||||||||||| | |||||||||||||||||||||||    
T  3209960 ttttaacttcaaatgtatatggtggaccaaccttaaaaatagtccatcgtaaaccttattaattttgttaattttaaccatttgatctattt 3209869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 48867426 - 48867336
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctatt 146  Q
    ||||||||| |||||| |||| || |||||| || || |||||||||||||||| ||||| || |||  |||||||||||||| |||||||    
T  48867426 ttttaaccttaaatgtctaaggtgaaccaactttgtaggtggtctaccatagactttattaaaatttgtaattttaaccattttatctatt 48867336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 35372151 - 35372062
Alignment:
Q  59 ttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 147  Q
    ||||| |||||||| || | ||||||||  ||| |||||||| | | ||||||||||||||||| | ||||||||||||| |||||||||    
T  35372151 ttaacttcaaatgtctatgttggaccaattttaaaagtggtccatcgtagaccttattaattttgttaattttaaccattcgatctattt 35372062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 10731002 - 10731094
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatct 143  Q
    ||||| |||||| |||||||| || | || |||||| ||| |||||||||| |||| |||||||||||||| | |||||||| |||| |||||    
T  10731002 gttaactttaacttcaaatgtctatggtgaaccaaccttaaaagtggtctatcatataccttattaattttgttaattttaatcattcgatct 10731094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 52719861 - 52719793
Alignment:
Q  79 tggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattt 147  Q
    ||||||||||||||| |||||| |||||| |||| ||||  |||| ||| ||||||||||||| |||||    
T  52719861 tggaccaacattatatgtggtccaccataaacctcattagctttttaatcttaaccatttgatatattt 52719793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 46495612 - 46495683
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattttt 123  Q
    ||||| ||||| | ||||||||| || || ||||||||| || |||||| | ||||||||||||||||||||    
T  46495612 gttaactttaaacccaaatgtattaggtgaaccaacattgtaggtggtccatcatagaccttattaattttt 46495683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 47765597 - 47765643
Alignment:
Q  96 tggtctaccatagaccttatt-aatttttaaattttaaccatttgat 141  Q
    ||||| ||||||||||||||| |||||||||||||||||| ||||||    
T  47765597 tggtccaccatagaccttattgaatttttaaattttaaccttttgat 47765643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 7270439 - 7270512
Alignment:
Q  50 ccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattttt 123  Q
    ||||||| ||||||||||||||| |    ||||||||| |||  |||||||||||||||| |||||||| ||||    
T  7270439 ccgttaactttaacctcaaatgtctgtagtggaccaaccttaagagtggtctaccatagatcttattaactttt 7270512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 12106697 - 12106782
Alignment:
Q  58 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatc 142  Q
    |||||||| |||||| ||  ||||||||  ||||||| ||||| ||| |||||||||||||||| || ||||||| || |||||||    
T  12106697 tttaaccttaaatgtctattatggaccagtattataaatggtccaccgtagaccttattaatttattcaattttatccctttgatc 12106782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 41263782 - 41263851
Alignment:
Q  79 tggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 147  Q
    |||| |||| ||| ||||||||||   ||||||||||||||||| | ||||||||||||| |||||||||    
T  41263782 tggatcaaccttaaaagtggtctattctagaccttattaattttgttaattttaaccattcgatctattt 41263851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 53420436 - 53420501
Alignment:
Q  53 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    |||| ||||||| ||||||| || | ||||||||| ||| ||||| || |||||||||||||||||    
T  53420436 ttaagtttaaccacaaatgtctatggtggaccaactttaaaagtgatccaccatagaccttattaa 53420501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 55423511 - 55423588
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattt 129  Q
    ||||| || |||| ||||||| | || ||||||||| || || |||||| ||| |||||||||||||||||| |||||    
T  55423511 gttaacttcaaccccaaatgtcttaggtggaccaaccttgtaggtggtccaccgtagaccttattaattttttaattt 55423588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 18442366 - 18442454
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttg 139  Q
    ||||| ||||||| ||||||| || | ||||||||||||||   | ||| ||||||||||||||||| || || |||||||||| ||||    
T  18442366 gttaagtttaaccccaaatgtctatggtggaccaacattatcgatagtccaccatagaccttattaacttcttcaattttaaccctttg 18442454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 19487440 - 19487528
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttg 139  Q
    ||||| ||||||| ||||||| || | ||||||||||||||   | ||| ||||||||||||||||| || || |||||||||| ||||    
T  19487440 gttaagtttaaccccaaatgtctatggtggaccaacattatcgatagtccaccatagaccttattaacttcttcaattttaaccctttg 19487528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 35633346 - 35633422
Alignment:
Q  56 attttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaa 132  Q
    |||||||||  |||||| |||| || | |||||||  | ||||||||||||||||||  | ||||||||||||||||    
T  35633346 attttaaccataaatgtctaaggtgtaacaacattgcaggtggtctaccatagacctattaaatttttaaattttaa 35633422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 40244303 - 40244399
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 147  Q
    ||||| |||||| |||| ||| || | ||||||||  ||| |||||||| | | ||||||||||||||||| | |||||||||  ||||||||||||    
T  40244303 gttaactttaacttcaagtgtctatggtggaccaaacttaaaagtggtccatcgtagaccttattaattttgttaattttaactctttgatctattt 40244399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 668468 - 668689
Alignment:
Q  16 caattatacatccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttat 115  Q
    ||||| ||| ||||||| |||||||||||   ||||||||||||||||| ||||| | ||||||||| ||||||| ||  ||||||| ||||||||||||    
T  668468 caattttacgtccgtcattcaaattggtcccattccgttaattttaaccccaaatatttaagatggaacaacattgtagatggtctatcatagaccttat 668567  T
Q  116 taatttttaaattttaaccatttgatctatttttgcaaacaagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaatta 215  Q
    |||||||| || |||||||||| |||||||||||  |||||| || |||||||||| | | |||||||||||| |||  ||||||||||||||| |||||    
T  668568 taattttttaaatttaaccattagatctatttttcaaaacaaaaaacgttggatcaaaaaggtctattgtatcatacaatgaaccatcaacaactaatta 668667  T
Q  216 ttttctcctttcttcatcttct 237  Q
    ||||  ||||||||||||||||    
T  668668 tttttccctttcttcatcttct 668689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 13533259 - 13533162
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 149  Q
    ||||| |||||| |||||||| || | |||||||||||||||  | ||| |||||||||||||||||||||| ||||||||||||||||||| |||||    
T  13533259 gttaaatttaacttcaaatgtctatggtggaccaacattatagatagtccaccatagaccttattaatttttcaattttaaccatttgatcttttttt 13533162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 43419371 - 43419191
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatt-tttgcaaac 155  Q
    ||||||||  ||||||||||| || |||||||||||| |||||| |||||||| |||| ||  |||| |||||||||| |||||||| || | |   ||     
T  43419371 ttttaaccataaatgtataaggtgaaccaacattataggtggtccaccatagatcttaatagatttttaattttaaccctttgatcttttgtctattaat 43419272  T
Q  156 aagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaattattttctcctttcttcatcttct 237  Q
     ||||| ||| ||||| | |||||||||||||||||  |||||||  |||||||||||| ||||| ||||||||||||||||    
T  43419271 gagaacggttagatcatacatgtctattgtatcgtatagtgaaccgccaacaaccaatt-ttttcccctttcttcatcttct 43419191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 34438526 - 34438616
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattt 147  Q
    |||||||||||||||| || | ||||| |||||||||  | ||| |||||||||||||||||||||| ||||| |||||||||||||||||    
T  34438526 ttttaacctcaaatgtctatggtggactaacattatagatagtccaccatagaccttattaattttttaatttcaaccatttgatctattt 34438616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 56296313 - 56296398
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    ||||||||  |||||| |||| ||||||||||| ||| |||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  56296313 ttttaaccctaaatgtctaaggtggaccaacatcataggtggtctaccatagaccttactaagttttttaattttaaccatttgat 56296398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 27847795 - 27847891
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttt 148  Q
    ||||| ||||||| |||||||||| | ||| |||| ||||||  | ||| |||||||||||||||||||||| |||||||||| |||||||| ||||    
T  27847795 gttaagtttaaccccaaatgtatatggtgggccaagattatagatagtccaccatagaccttattaatttttcaattttaaccctttgatctttttt 27847891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 40723345 - 40723443
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatt-tttaaattttaaccatttgatctattttt 149  Q
    ||||| |||||||||||||||||| | ||||||||| |||  |||||||||||||||| | |||||||| ||||||| |||| | |||||||| |||||    
T  40723345 gttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattatttaaatgttaatcgtttgatcttttttt 40723443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 26393113 - 26393038
Alignment:
Q  67 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    |||||| |||| || |||||||||||| |||||| ||||||||||||| ||| ||||| |||||||||||||||||    
T  26393113 aaatgtctaaggtgaaccaacattataggtggtccaccatagaccttactaagttttttaattttaaccatttgat 26393038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 56000417 - 56000492
Alignment:
Q  67 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    |||||| |||| ||||||||||||||| |||||| ||| ||||||||| ||| ||||| |||||||||||||||||    
T  56000417 aaatgtctaaggtggaccaacattataggtggtccaccgtagaccttactaagttttttaattttaaccatttgat 56000492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 6348272 - 6348370
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgatctattttt 149  Q
    ||||| ||||||||||||||| || | ||||||||| |||  ||||||| ||| |||||||||||||| |||  |||||||||| |||||||| |||||    
T  6348272 gttaagtttaacctcaaatgtctatggtggaccaaccttaagagtggtccaccgtagaccttattaatatttctaattttaaccctttgatcttttttt 6348370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 38555272 - 38555130
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctatttt-tgcaaa 154  Q
    |||||| || |||||| |||| || |||||| || || |||||||||||||||| ||||| ||||||| ||||| |||| |||||||| |||| |  |||    
T  38555272 ttttaatcttaaatgtctaaggtgaaccaactttgtaggtggtctaccatagactttattaaattttttaatttaaaccgtttgatcttttttatttaaa 38555173  T
Q  155 caagaaccgttggatcacagatgtctattgtatcgtacggtga 197  Q
      |||||| |||||| ||| ||||||||| |||| ||||||||    
T  38555172 ggagaaccattggattacacatgtctattttatcttacggtga 38555130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 237
Target Start/End: Original strand, 56085465 - 56085650
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatt-tttaaattttaaccatttgatctatttttg 150  Q
    ||||| ||||||| ||||||| || | ||||| ||| |||  ||||||| |||||||| | |||||||| ||| ||||| |||| |||||| | |||||     
T  56085465 gttaactttaaccccaaatgtctatggtggactaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgattttttttta 56085564  T
Q  151 caaacaagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaattattttctcctttcttcatcttct 237  Q
     ||  | || ||||||||||||| |||| |||| |||| ||| ||||||||||||||   |||| |||  |||||||||||||||||    
T  56085565 aaaggatga-ccgttggatcacacatgtgtattttatcttacagtgaaccatcaacacttaattctttattcctttcttcatcttct 56085650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 3533594 - 3533519
Alignment:
Q  67 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    |||||| |||| | ||||||||||||| | |||| ||||||||||||| ||| ||||| |||||||||||||||||    
T  3533594 aaatgtctaaggtcgaccaacattataggcggtccaccatagaccttactaagttttttaattttaaccatttgat 3533519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 4714139 - 4714230
Alignment:
Q  53 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgatct 143  Q
    |||| |||||| |||||||| || | |||| |||| |||  ||||||| ||||||||| | |||||| ||||||||||||||||||||||||    
T  4714139 ttaagtttaacttcaaatgtctatggtggatcaaccttaagagtggtccaccatagacttcattaatattttaaattttaaccatttgatct 4714230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 2162727 - 2162825
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgatctattttt 149  Q
    ||||| |||||||  |||| | |||| | |||||||||| || |||||| ||||||||||||||||| ||||| |||||||||  |||||||| |||||    
T  2162727 gttaagtttaaccctaaatatgtaaggttgaccaacattttaggtggtccaccatagaccttattaattttttcaattttaacactttgatcttttttt 2162825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 33231519 - 33231601
Alignment:
Q  63 cctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctat 145  Q
    |||||||||| || | ||||| ||| ||| |||||||| |||||| ||  ||||||||||| ||||| |||||||||||||||    
T  33231519 cctcaaatgtctatggtggacaaaccttagaagtggtccaccataaactctattaattttttaatttcaaccatttgatctat 33231601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 198
Target Start/End: Complemental strand, 53401442 - 53401336
Alignment:
Q  93 aagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttttgcaaaca-agaaccgttggatcacagatgtctattgtatcgta 191  Q
    ||||||||||||||||||||  | ||||||| |||||||||  |||||||| ||||| |||| | | |||||||||||||   | |||||||||| | ||    
T  53401442 aagtggtctaccatagacctattaaattttttaattttaactgtttgatcttttttttcaaatagaaaaccgttggatcatgtaggtctattgtaacata 53401343  T
Q  192 cggtgaa 198  Q
    |||||||    
T  53401342 cggtgaa 53401336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 1794548 - 1794629
Alignment:
Q  69 atgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctattttt 149  Q
    ||||||| | ||||||||| |||  ||||||| ||||||||||||||| ||||||| ||||| |||| ||||||| ||||||    
T  1794548 atgtatatggtggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgatcaattttt 1794629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 29663758 - 29663847
Alignment:
Q  53 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    ||||||||||| | |||||| |||| || |||||||||||| |||||| |||||| |||||| |||  |||| ||||||||||| |||||    
T  29663758 ttaattttaacattaaatgtctaaggtgaaccaacattataggtggtccaccataaaccttactaagatttttaattttaaccacttgat 29663847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 52633651 - 52633598
Alignment:
Q  95 gtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttt 148  Q
    ||||||||||||||||||||| |||||||  |||||||| ||||||||| ||||    
T  52633651 gtggtctaccatagaccttataaatttttttattttaacaatttgatctttttt 52633598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 36614185 - 36614249
Alignment:
Q  26 tccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacatt 90  Q
    ||||||| |||||||||||  ||| |||||||||||||  ||||||| |||||| ||||||||||    
T  36614185 tccgtcactcaaattggtcccgtttcgttaattttaactccaaatgtttaagatagaccaacatt 36614249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 306735 - 306780
Alignment:
Q  95 gtggtctaccatagaccttattaatttttaaattttaaccatttgat 141  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||||    
T  306735 gtggtctatcatagaccttattaa-ttttaaattttaaccctttgat 306780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 17494247 - 17494329
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccattt 138  Q
    ||||||||| |||||| |||  || | |||| ||| |||| ||| ||||||||||||||||||||| | ||||||||||||||    
T  17494247 ttttaaccttaaatgtctaacgtgaaacaacgttaaaagtagtccaccatagaccttattaattttatgaattttaaccattt 17494329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 37884276 - 37884178
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctattttt 149  Q
    ||||| ||||||| ||||| |||| | || ||||| ||||||  | ||| ||||||||||||||| ||||||  |||||||||| |||||||| |||||    
T  37884276 gttaagtttaaccccaaatatatatggtgaaccaatattatatatagtccaccatagaccttattaaattttccaattttaaccctttgatcttttttt 37884178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 2311098 - 2311167
Alignment:
Q  79 tggaccaacattataagtggtctaccatagaccttattaat-ttttaaattttaaccatttgatctattt 147  Q
    ||||||||  ||| |||||||||| | |||||||||||||| || | ||||||||||||| |||||||||    
T  2311098 tggaccaatcttaaaagtggtctatcgtagaccttattaatattgttaattttaaccattcgatctattt 2311167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 11114976 - 11114915
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    ||||||||| |||||| |||| || |||||| || || |||||||||||||||| |||||||    
T  11114976 ttttaaccttaaatgtctaagctgaaccaactttgtaggtggtctaccatagactttattaa 11114915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 28657116 - 28657039
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattt 129  Q
    ||||| ||||||| ||||||| | || ||||||||| || || ||| || ||| |||||||||||||||||| |||||    
T  28657116 gttaactttaaccccaaatgtcttaggtggaccaaccttgtaggtgatccaccgtagaccttattaattttttaattt 28657039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 50547066 - 50547118
Alignment:
Q  93 aagtggtctaccatagaccttattaatttttaaattttaaccatttgatctat 145  Q
    |||||||| |||||| ||  ||||||||||| ||||| |||||||||||||||    
T  50547066 aagtggtccaccataaactctattaattttttaatttcaaccatttgatctat 50547118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 136719 - 136814
Alignment:
Q  26 tccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt 121  Q
    ||||| ||||||||| ||||| |||||||||||||||| |||||||| |||| |||||| ||||  ||||||||||||||||||||||||||||||    
T  136719 tccgttagtcaaattagtcatattccgttaattttaacatcaaatgtctaaggtggaccgacatggtaagtggtctaccatagaccttattaattt 136814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 7312281 - 7312184
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 149  Q
    ||||| ||||||| ||||||||| ||||||||||||||| || |||||  ||| |||| ||||||||||||| ||||| ||||||||||||| |||||    
T  7312281 gttaactttaaccccaaatgtattagatggaccaacattgtaggtggttcaccgtagatcttattaattttttaatttcaaccatttgatcttttttt 7312184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 30231576 - 30231665
Alignment:
Q  32 agtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt 121  Q
    ||||||||| ||| | |||||||||||||||| |||||||| |||| || ||||||||  ||||||||| |||||||||||| |||||||    
T  30231576 agtcaaattagtcctattccgttaattttaacatcaaatgtctaaggtgaaccaacatggtaagtggtccaccatagaccttgttaattt 30231665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 24757000 - 24757092
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatt-tttaaattttaaccatttgatct 143  Q
    ||||| ||||||| |||| |||| ||||||| ||||||| || |||||||||| ||||||||||||||| ||| ||||||||| |||||||||    
T  24757000 gttaactttaaccacaaaagtattagatggagcaacattgtaggtggtctaccttagaccttattaattcttttaattttaacaatttgatct 24757092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 29380306 - 29380404
Alignment:
Q  50 ccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 147  Q
    |||||||||||||| ||||||||||| | |||| |||| ||| |||| ||| | | ||||||||||||||||| | ||||||||||||| |||||||||    
T  29380306 ccgttaattttaacttcaaatgtatatggtggatcaaccttaaaagtagtccatcgtagaccttattaattttgttaattttaaccattcgatctattt 29380404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 32505786 - 32505884
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa--tttttaaattttaaccatttgatctattttt 149  Q
    ||||| ||||||| ||||||| ||  |||||| |||||||  ||||||| |||||||||||||||||  ||||||| ||| |||| ||||||||||||||    
T  32505786 gttaagtttaaccccaaatgtctataatggac-aacattaagagtggtccaccatagaccttattaaattttttaagtttaaaccgtttgatctattttt 32505884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 23397355 - 23397257
Alignment:
Q  50 ccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 147  Q
    ||||||| |||||| |||||||| || | ||||||||| ||| |||| ||| ||| || |||||||||||||| | ||||||||||||  |||||||||    
T  23397355 ccgttaaatttaacttcaaatgtctatggtggaccaaccttaaaagtagtccaccgtataccttattaattttgttaattttaaccatccgatctattt 23397257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 293636 - 293575
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  293636 ttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 293575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 14328770 - 14328709
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  14328770 ttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 14328709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 14421780 - 14421719
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  14421780 ttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 14421719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 9927716 - 9927802
Alignment:
Q  49 tccgttaatttt-aacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatta-atttttaaattttaacc 134  Q
    |||||||||||| ||||| |||||| ||||||| |||||| || || ||||||||||| |||| |||||| |||||| ||||||||||    
T  9927716 tccgttaatttttaaccttaaatgtctaagatgaaccaactttgtaggtggtctacca-agactttattacattttttaattttaacc 9927802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 27082168 - 27082081
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatct 143  Q
    |||||||  |||||||||| | ||||||||||| |||  || || ||| |||||||||||||||| || ||||||| |||||||||||    
T  27082168 ttttaactccaaatgtatatggtggaccaacataatacatgatccaccgtagaccttattaatttatttaattttagccatttgatct 27082081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 15728848 - 15728917
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt 121  Q
    ||||| ||||||||||||| | || | |||||||||||||||  | ||| |||||||||| |||||||||    
T  15728848 gttaagtttaacctcaaatatctatggtggaccaacattatagatagtccaccatagaccctattaattt 15728917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 22298724 - 22298816
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 149  Q
    ||||||||| |||||| |||| ||||| ||| ||| | ||||||||||||| || |||||||  |||  | ||||||| |||||||| |||||    
T  22298724 ttttaaccttaaatgtctaaggtggacgaactttacaggtggtctaccataaactttattaaaatttttaatttaaccgtttgatcttttttt 22298816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 9662235 - 9662138
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 149  Q
    ||||| |||||| |||||||| || | |||||||||||||||  | ||| |||||||||||||||||||||| ||||||||||||||||||| |||||    
T  9662235 gttaaatttaacttcaaatgtctatggtggaccaacattatagatagtccaccatagaccttattaatttttcaattttaaccatttgatcttttttt 9662138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 35484306 - 35484126
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatt-tttgcaaac 155  Q
    ||||||||  |||||| |||| || |||||||||||| |||||| |||||||| |||| ||  |||| |||||||||| |||||||| || |||  |||     
T  35484306 ttttaaccctaaatgtctaaggtgaaccaacattataggtggtccaccatagatcttaatagatttttaattttaaccctttgatcttttgtttataaat 35484207  T
Q  156 aagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaattattttctcctttcttcatcttct 237  Q
     ||||| ||| ||||| | |||||||||||||||||  |||||||  |||||||||||| |||||   ||||||||||||||    
T  35484206 gagaacagttagatcatacatgtctattgtatcgtatagtgaaccgccaacaaccaatt-ttttccaatttcttcatcttct 35484126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 26135733 - 26135828
Alignment:
Q  26 tccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt 121  Q
    ||||| ||||||||| ||| | ||  |||||||||||| |||||||| ||||||||||| ||||  ||||||||| ||||||||||||||||||||    
T  26135733 tccgttagtcaaattagtcctattatgttaattttaacatcaaatgtctaagatggaccgacatggtaagtggtccaccatagaccttattaattt 26135828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 26406245 - 26406425
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatctatttttgcaaac 155  Q
    ||||||||| |||||| |||| || |||||| || || |||||| ||||||||  |||| ||||  || |||||||||| |||||| | |||||  |||     
T  26406245 ttttaaccttaaatgtctaaggtgaaccaactttgtaggtggtccaccatagatattataaattcatttaattttaaccctttgatat-tttttaaaaaa 26406343  T
Q  156 aagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaattattttctcc-tttcttcatcttct 237  Q
     ||||||||||||||| | |||||| ||||||| ||| |||||| ||||||| | |||| |||||||| ||||||||||||||    
T  26406344 gagaaccgttggatcatatatgtctgttgtatcatacagtgaacaatcaacacctaatt-ttttctccatttcttcatcttct 26406425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 7354623 - 7354688
Alignment:
Q  53 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||||||| | | |||||||||||||    
T  7354623 ttaactttaaccacaaatgtctaagatggaccaacattataagtggtccatcgtagaccttattaa 7354688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 28325192 - 28325284
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctatttt 148  Q
    |||||| || |||||| |||| ||||||||| || || |||||||||||||||| ||||| || |||||||||| |||| |||||||| ||||    
T  28325192 ttttaatcttaaatgtctaaggtggaccaactttgtaggtggtctaccatagactttattaaaattttaaatttaaaccgtttgatctttttt 28325284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 16755989 - 16756079
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatt-tttaaattttaaccatttgat 141  Q
    ||||| ||||||||||||||| || | || | |||| ||| |||| |||||||||||| | |||||||| ||| |||||||||||||||||    
T  16755989 gttaactttaacctcaaatgtctatggtgaaacaaccttaaaagttgtctaccatagatcctattaattattttaattttaaccatttgat 16756079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 11501297 - 11501393
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 147  Q
    ||||| |||||| |||||||| || | ||||||||| ||| |||||||  |   ||||||||||||||||| | ||||||||||||| |||||||||    
T  11501297 gttaactttaacttcaaatgtctatggtggaccaaccttaaaagtggttcattgtagaccttattaattttgttaattttaaccattcgatctattt 11501393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 45719745 - 45719820
Alignment:
Q  67 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    |||||| |||| ||||||||||||||| ||| || |||||| |||||| ||| ||||| ||||||||||| |||||    
T  45719745 aaatgtctaaggtggaccaacattataggtgctccaccataaaccttactaagttttttaattttaaccaattgat 45719820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 25154932 - 25154846
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatc 142  Q
    ||||||||| |||||| |||| || |||||| |||||||||||| |||||| | |||||| ||| ||| | |||||||| |||||||    
T  25154932 ttttaaccttaaatgtctaaggtgaaccaactttataagtggtccaccataaaacttattaaatcttttatttttaaccgtttgatc 25154846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 3332181 - 3332064
Alignment:
Q  26 tccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-tta 124  Q
    ||||| ||||| ||| ||| | |||||||||||||||| | |||||| |||| || ||||| ||  |||||| |  |||||| ||||||||||||| ||     
T  3332181 tccgttagtcatattagtcctcttccgttaattttaacattaaatgtttaaggtgcaccaatatggtaagtgatacaccatataccttattaatttattt 3332082  T
Q  125 aattttaaccatttgatc 142  Q
    ||||||| || |||||||    
T  3332081 aattttagccctttgatc 3332064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 46458709 - 46458648
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    ||||||||| |||||| |||| || |||||| ||||| || ||| |||||||||||||||||    
T  46458709 ttttaaccttaaatgtctaaggtgaaccaactttataggtagtccaccatagaccttattaa 46458648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 32693947 - 32694043
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 147  Q
    ||||| |||||| | ||||||||| ||||||||||| ||| |||||| ||| ||||||||||||||||||| | |||||||||| ||||||||||||    
T  32693947 gttaactttaactttaaatgtatatgatggaccaaccttaaaagtggcctatcatagaccttattaattttattaattttaaccgtttgatctattt 32694043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 24069432 - 24069357
Alignment:
Q  67 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    |||||| |||| ||||||||||||||| |||||| ||||||||||||| ||| ||||| |||||||||||||||||    
T  24069432 aaatgtctaaggtggaccaacattataggtggtccaccatagaccttactaagttttttaattttaaccatttgat 24069357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 13513540 - 13513625
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    ||||||| |||||||||||||||| ||||   ||| |||||||| |||||| |||||||||| ||||| |||||||||||||||||    
T  13513540 ttttaacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaatttttttaattttaaccatttgat 13513625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 13603073 - 13603158
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    ||||||| |||||||||||||||| ||||   ||| |||||||| |||||| |||||||||| ||||| |||||||||||||||||    
T  13603073 ttttaacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaatttttttaattttaaccatttgat 13603158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 34617191 - 34617106
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagacctta-ttaatttttaaattttaaccatttgat 141  Q
    ||||||||  ||||||||||| ||||||||||||| | |||||| ||| ||||||||| | ||||||| |||||||||||||||||    
T  34617191 ttttaaccctaaatgtataaggtggaccaacattacaggtggtccaccgtagaccttactaaattttttaattttaaccatttgat 34617106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 7770884 - 7770809
Alignment:
Q  67 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    |||||| |||| ||||||||||||||| ||||||  |||||||||||| ||| ||||| |||||||||||||||||    
T  7770884 aaatgtctaaggtggaccaacattataggtggtcctccatagaccttactaagttttttaattttaaccatttgat 7770809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 7796794 - 7796719
Alignment:
Q  67 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    |||||| |||| ||||||||||||||| ||||||  |||||||||||| ||| ||||| |||||||||||||||||    
T  7796794 aaatgtctaaggtggaccaacattataggtggtcctccatagaccttactaagttttttaattttaaccatttgat 7796719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 7816075 - 7816000
Alignment:
Q  67 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaa-tttttaaattttaaccatttgat 141  Q
    |||||| |||| ||||||||||||||| ||||||  |||||||||||| ||| ||||| |||||||||||||||||    
T  7816075 aaatgtctaaggtggaccaacattataggtggtcctccatagaccttactaagttttttaattttaaccatttgat 7816000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 39515329 - 39515404
Alignment:
Q  67 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaattttta-aattttaaccatttgat 141  Q
    |||||| |||| ||||||||||||||| |||||| | ||||||||||| ||| ||||| |||||||||||||||||    
T  39515329 aaatgtctaaggtggaccaacattataggtggtccatcatagaccttactaagttttataattttaaccatttgat 39515404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 42100105 - 42100009
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 147  Q
    ||||| |||||| |||||||| |  | ||||||||| ||| |||||||| | | ||||||||||||||||| | ||||||||||||| |||||||||    
T  42100105 gttaactttaacttcaaatgtctttggtggaccaaccttaaaagtggtccatcgtagaccttattaattttgttaattttaaccattcgatctattt 42100009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 38696999 - 38696908
Alignment:
Q  58 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 149  Q
    ||||||||||||| | ||   |||||||||||||||  | ||| ||||||||||| |||||||||| |||||||| | |||||||| |||||    
T  38696999 tttaacctcaaatttctattgtggaccaacattatagatagtccaccatagacctaattaatttttcaattttaatcctttgatcttttttt 38696908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 44076332 - 44076202
Alignment:
Q  79 tggaccaacattataagtggtctaccatagaccttattaattttta-aattttaaccatttgatctatttttgcaaacaagaaccgttggatcacagatg 177  Q
    |||| |||||||| || || || |||||| | |||||||||||||  ||||| ||||||||||||||||| |  ||||| |||||||| |||||| || |    
T  44076332 tggaacaacattaaaaatgatccaccataaatcttattaatttttttaatttaaaccatttgatctatttattaaaacacgaaccgtttgatcac-gagg 44076234  T
Q  178 tctattgtatcgtacggtgaaccatcaacaac 209  Q
    | ||||||||| ||  ||||| ||||||||||    
T  44076233 tttattgtatcatatagtgaatcatcaacaac 44076202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 42877736 - 42877838
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttttgc 151  Q
    ||||| ||||||| ||||||| || | ||||||||| |||  | ||||| |||||||| | |||||||| || ||||| |||| |||||||||||||| |    
T  42877736 gttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccatagatcctattaattatttaatttcaaccctttgatctatttttcc 42877835  T
Q  152 aaa 154  Q
    |||    
T  42877836 aaa 42877838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 13367046 - 13366985
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  13367046 ttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 13366985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 39220799 - 39220864
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt 122  Q
    ||||||||| |||||| |||| || | ||| |||| |||| |||||||||||||||||||||||||    
T  39220799 ttttaaccttaaatgtctaaggtgaaacaatattaaaagtagtctaccatagaccttattaatttt 39220864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 44606259 - 44606352
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctattttt 149  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||| |||||||||||| || ||| ||| | |||||||| |||||||| |||||    
T  44606259 ttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttgttaaatcttttatttttaaccgtttgatcttttttt 44606352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 6397942 - 6397998
Alignment:
Q  94 agtggtctaccatagaccttattaa-tttttaaattttaaccatttgatctattttt 149  Q
    ||||||| ||||||||||||||||| ||||| ||||| ||||||||||||| |||||    
T  6397942 agtggtccaccatagaccttattaatttttttaatttaaaccatttgatctgttttt 6397998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 42872188 - 42872117
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattttt 123  Q
    ||||| ||||||||||||||| || | | ||||||| |||  |||||||||||||||| | |||||||||||    
T  42872188 gttaactttaacctcaaatgtctatggtagaccaaccttaagagtggtctaccatagatcctattaattttt 42872117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 45395112 - 45395171
Alignment:
Q  79 tggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccattt 138  Q
    |||||||| ||| || |||||| | |||||||| ||||||||||||||||| ||||||||    
T  45395112 tggaccaatattgtaggtggtccatcatagaccgtattaatttttaaatttaaaccattt 45395171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 32797256 - 32797354
Alignment:
Q  50 ccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 147  Q
    ||||||| ||||||  ||||||| || |||||| |||| ||| || ||||  | | ||||||||||||||||| | ||||||||||||| |||||||||    
T  32797256 ccgttaagtttaactccaaatgtctatgatggatcaaccttaaaaatggttcatcgtagaccttattaattttgttaattttaaccattcgatctattt 32797354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 14840896 - 14840807
Alignment:
Q  53 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgat 141  Q
    |||| ||||||| ||||||| || | ||||||||||||| ||||| || |||||||  |||||| ||||||| ||||| |||| ||||||    
T  14840896 ttaagtttaaccacaaatgtctatggtggaccaacattaaaagtgatccaccatagttcttattaaattttttaatttaaaccgtttgat 14840807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 38696455 - 38696516
Alignment:
Q  81 gaccaacattataagtggtctaccatagaccttattaattttta-aattttaaccatttgat 141  Q
    ||||||| ||| |||||||| |||||||| || ||||||||||| |||||||||| ||||||    
T  38696455 gaccaaccttaaaagtggtccaccatagatctaattaatttttataattttaaccctttgat 38696516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 45279812 - 45279893
Alignment:
Q  67 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 147  Q
    ||||||||| | |||||||   ||| |||||||||| | ||||||||| ||||||| | ||||||||||||| |||||||||    
T  45279812 aaatgtatatggtggaccagtcttaaaagtggtctatcgtagaccttaataattttgttaattttaaccattcgatctattt 45279893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 28403543 - 28403603
Alignment:
Q  26 tccgtcagtcaaattggtcatgttccgttaattttaacctcaaatgtataagatggaccaa 86  Q
    |||||||||||| ||||||||  ||  ||||||||||| |||||||| |||| ||||||||    
T  28403543 tccgtcagtcaatttggtcatactctcttaattttaacttcaaatgtttaaggtggaccaa 28403603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 36070303 - 36070359
Alignment:
Q  62 acctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    |||| |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  36070303 accttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 36070359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 19466201 - 19466109
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 149  Q
    |||||||||||||||| || | ||||| |||||||||  | ||| |||||||||||||||||||||| ||||| | |||||||||||||||||    
T  19466201 ttttaacctcaaatgtctatggtggactaacattatagatagtccaccatagaccttattaattttttaatttcagccatttgatctattttt 19466109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 51300252 - 51300160
Alignment:
Q  58 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattttt 149  Q
    |||||||| || |||  ||| ||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||| |||||||    
T  51300252 tttaaccttaagtgtcaaaggtggaccaacattaaaagtggtccaccatagaccttattaattttatgaattttaaccatttgatatattttt 51300160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 36509931 - 36510022
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttt 148  Q
    |||||||||||||||| || | ||||| |||||||||  |  || |||||||||||||||||||||| ||||||| ||||||||||||||||    
T  36509931 ttttaacctcaaatgtctatggtggactaacattatagatattccaccatagaccttattaattttttaattttagccatttgatctatttt 36510022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 16757522 - 16757456
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||||||||| | |||||||||||||||    
T  16757522 gttaactttaaccacaaatgtctaagatggaccaacattataagtggtccatcatagaccttattaa 16757456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 48097030 - 48096932
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatt-tttaaattttaaccatttgatctattttt 149  Q
    ||||| |||||||||||||||||| | ||||||||| |||  |||||||||||||||| | |||||||| ||||||| |||| | |||||||| |||||    
T  48097030 gttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattatttaaatattaatcgtttgatcttttttt 48096932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 15746764 - 15746662
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttttgc 151  Q
    ||||| |||||| |||||||| || | ||||||||  |||  ||||||| |||||||| | ||||||| ||| |||||||||| |||||||||||||| |    
T  15746764 gttaagtttaacttcaaatgtctatggtggaccaatcttaagagtggtccaccatagatcctattaatcttttaattttaaccctttgatctatttttac 15746665  T
Q  152 aaa 154  Q
    |||    
T  15746664 aaa 15746662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 16963966 - 16964047
Alignment:
Q  67 aaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 147  Q
    |||||| || ||||||||||| ||| |||||||| | ||||||||||||||||||| | |||||||||| || |||||||||    
T  16963966 aaatgtttatgatggaccaaccttaaaagtggtccatcatagaccttattaattttgttaattttaacccttcgatctattt 16964047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 30535654 - 30535570
Alignment:
Q  65 tcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 149  Q
    |||||||| || | |||||||||||||||  | ||| ||||||||||||||| |||||| |||||||||| | |||||| |||||    
T  30535654 tcaaatgtctatggtggaccaacattatagatagtccaccatagaccttatttattttttaattttaaccctctgatcttttttt 30535570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 38965259 - 38965195
Alignment:
Q  58 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt 122  Q
    ||||| || ||||||||||| | |||||| |||| ||||||||||||||| ||||||||||||||    
T  38965259 tttaatcttaaatgtataaggtagaccaatattaaaagtggtctaccataaaccttattaatttt 38965195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 41873969 - 41873877
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattttt-aaattttaaccatttgatct 143  Q
    ||||| ||||||| ||||||| || | ||||||||| |||  ||||||| ||||||||| | |||||||||| ||||||||||| ||||||||    
T  41873969 gttaagtttaaccacaaatgtctatggtggaccaaccttaagagtggtccaccatagacttcattaattttttaaattttaaccgtttgatct 41873877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 34258709 - 34258627
Alignment:
Q  53 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaacc 134  Q
    ||||||||||||| |||| | |||| |||||||||||| || | |||| |||||| ||||||||||||| || ||||||||||    
T  34258709 ttaattttaacctaaaatatctaaggtggaccaacattgtatgcggtccaccataaaccttattaatttatttaattttaacc 34258627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 7161294 - 7161229
Alignment:
Q  79 tggaccaacattataagtggtctaccatagaccttattaattttt-aaattttaaccatttgatct 143  Q
    |||||||||||||||  | ||| ||||||||||||| |||||||| |||||||||||||| |||||    
T  7161294 tggaccaacattatagatagtccaccatagaccttaataatttttaaaattttaaccattagatct 7161229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 47762015 - 47762076
Alignment:
Q  56 attttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatta 117  Q
    |||||||||| |||||||||||||||||||||||  || ||||||||||   ||||||||||    
T  47762015 attttaacctaaaatgtataagatggaccaacatcgtaggtggtctacccgtgaccttatta 47762076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 51042343 - 51042240
Alignment:
Q  50 ccgttaattttaacctcaaatgtataagatggacca---acattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatctat 145  Q
    ||||||| | ||||||||||||| || ||||||| |   ||||| || |||||||||||||||||| |||||||| || ||||| |||| |||||||| |    
T  51042343 ccgttaagtataacctcaaatgtctatgatggactacaaacattgtaggtggtctaccatagacctcattaatttgtttaatttaaaccgtttgatcttt 51042244  T
Q  146 tttt 149  Q
    ||||    
T  51042243 tttt 51042240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 51726840 - 51726779
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    ||||||||| |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  51726840 ttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 51726779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 835390 - 835489
Alignment:
Q  49 tccgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttt 148  Q
    |||||||| |||||| |||||| | || |||| ||||||||||||  | ||| | |||||||| ||| ||||||| |||||||||| |||||||| ||||    
T  835390 tccgttaactttaacttcaaatatttatgatgaaccaacattatagattgtccatcatagacc-tataaatttttcaattttaaccctttgatctttttt 835488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 21507197 - 21507280
Alignment:
Q  66 caaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 149  Q
    ||||||||| || |||||||||| | || |||||| | | |||||||||||||||||| ||||| | || |||||||| |||||    
T  21507197 caaatgtattaggtggaccaacaatgtaggtggtccatcgtagaccttattaattttttaatttcagccgtttgatcttttttt 21507280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 9226214 - 9226145
Alignment:
Q  51 cgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatt 120  Q
    |||||| ||||||||||||||| || | |||| |||| ||| |||||||| |||||||| | ||||||||    
T  9226214 cgttaaatttaacctcaaatgtctatggtggatcaaccttaaaagtggtccaccatagatcctattaatt 9226145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 9633895 - 9633980
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgat 141  Q
    ||||||| |||||||| |||| || ||||   ||| | |||||| ||||||||||||||| |||||||||||||| ||| ||||||    
T  9633895 ttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaatttttaaattttgaccctttgat 9633980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 238
Target Start/End: Original strand, 15743416 - 15743540
Alignment:
Q  113 tattaatttttaaattttaaccatttgatctatttttgcaaacaagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaa 212  Q
    ||||||||||||| |||||||| |||||||||||||| ||||  ||||| ||||||| ||     | |||| |||| || |||||  || ||||||| ||    
T  15743416 tattaatttttaa-ttttaaccctttgatctattttttcaaaagagaacggttggattacgcggatgtattttatcttatggtgagtcaacaacaactaa 15743514  T
Q  213 ttattttctcctttcttcatcttctc 238  Q
    ||| ||| | ||||||||||||||||    
T  15743515 ttaattttttctttcttcatcttctc 15743540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 21277114 - 21277175
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    |||| |||| |||||| |||| || |||||| ||||| |||||| |||||||||||||||||    
T  21277114 ttttgaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaa 21277175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 237
Target Start/End: Original strand, 46467264 - 46467449
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctatttttgc 151  Q
    ||||| |||||||  |||||| || | ||||||||||||| ||||| || ||| ||||  ||||||| |||| ||||| |||| |||||| ||||||       
T  46467264 gttaagtttaaccataaatgtctatggtggaccaacattaaaagtgatccaccgtagatgttattaaatttttaatttaaaccgtttgatatattttcta 46467363  T
Q  152 aaacaagaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaattattttctcctttcttcatcttct 237  Q
    |||  |  ||| ||| || | |  ||||||||||| | ||||||| |||| ||||||| |||| |||  | |||||||||||||||    
T  46467364 aaaagatgaccattgaattatacgtgtctattgtaacttacggtgcaccaacaacaactaattctttctttctttcttcatcttct 46467449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 8092719 - 8092779
Alignment:
Q  58 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    |||||||| |||| | |||| || |||||| ||||| |||||| |||||||||||||||||    
T  8092719 tttaaccttaaatatctaaggtgaaccaactttataggtggtccaccatagaccttattaa 8092779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 13642553 - 13642461
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 149  Q
    ||||||||| |||||| |||| ||||| ||| ||| | ||||||||||||| || |||||||  |||  | ||||||| |||||||| |||||    
T  13642553 ttttaaccttaaatgtctaaggtggacgaactttacaggtggtctaccataaactttattaaaatttttaatttaaccgtttgatcttttttt 13642461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 45570539 - 45570618
Alignment:
Q  157 agaaccgttggatcacagatgtctattgtatcgtacggtgaaccatcaacaaccaattattttctcctttcttcatcttct 237  Q
    ||||| ||| ||||| | ||||||||||||||||   | |||||  |||||||||||| ||||| ||||||||||||||||    
T  45570539 agaacagttagatcatacatgtctattgtatcgtttagcgaaccgccaacaaccaatttttttc-cctttcttcatcttct 45570618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 673 - 581
Alignment:
Q  58 tttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctattttt 149  Q
    ||||||||||||||||||  |||||||||| |||  ||||||| ||||||||||||||| ||||||| ||||| |||| |||||||| |||||    
T  673 tttaacctcaaatgtatataatggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgatctgttttt 581  T

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Target: scaffold0178 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 1331 - 1422
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 149  Q
    ||||||||| |||||| |||| || |||||| ||||||| | |||||||||||| |||||||||||| |||||||||| |||||||| |||||    
T  1331 ttttaaccttaaatgtttaaggtgaaccaactttataag-gatctaccatagactttattaattttttaattttaaccgtttgatcttttttt 1422  T

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Target: scaffold0148 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 14820 - 14916
Alignment:
Q  53 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttttaaattttaaccatttgatctattttt 149  Q
    |||| ||||||||| ||||| || |||||||||| ||||||  || || ||||||||| |||||||||||| ||||| | |||||||||||||||||    
T  14820 ttaactttaacctctaatgtctatgatggaccaatattatagatgatccaccatagacattattaattttttaatttaagccatttgatctattttt 14916  T

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Target: scaffold0034 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 109743 - 109648
Alignment:
Q  53 ttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 147  Q
    |||| |||||| ||||||||||| | ||||||||| ||| || | ||| | | ||||||||||||||||| | |||||||||||||||||||||||    
T  109743 ttaactttaacttcaaatgtatatggtggaccaaccttaaaaatagtccatcgtagaccttattaattttgttaattttaaccatttgatctattt 109648  T

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Target: scaffold0031 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 125212 - 125137
Alignment:
Q  69 atgtataagatggaccaacattataagtggtctaccatagaccttattaa--tttttaaattttaaccatttgatc 142  Q
    ||||||| ||||||||||| ||| |||||||| |||||||||||||||||  ||||| ||||| |||| |||||||    
T  125212 atgtatatgatggaccaaccttaaaagtggtccaccatagaccttattaaatttttttaatttaaaccctttgatc 125137  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 152058 - 151966
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatta-atttttaaattttaaccatttgatct 143  Q
    |||||||||||||  |||| | |||||| ||||||||||||| |||||| |||| |||||| || | |||||||| |||||||| ||||||||    
T  152058 gttaattttaacccaaaatatttaagatagaccaacattataggtggtccaccaaagacctcatcagatttttaatttttaaccgtttgatct 151966  T

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Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 151452 - 151549
Alignment:
Q  51 cgttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttatt-aatttttaaattttaaccatttgatctattt 147  Q
    ||||||||||||| | ||||||  |||||||||||||||| || || ||| |||| ||| ||  || ||||||||| | ||||||| |||||||||||    
T  151452 cgttaattttaacttaaaatgttcaagatggaccaacattgtaggtagtcaaccaaagatctggttcaatttttaattcttaaccaattgatctattt 151549  T

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Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 22125 - 22196
Alignment:
Q  79 tggaccaacattataagtggtctaccatagaccttattaattt-ttaaattttaaccatttgatctattttt 149  Q
    |||||||||||| || |||||| |||||||||| ||||||||| || ||||| ||||||||||| |||||||    
T  22125 tggaccaacattgtaggtggtccaccatagaccctattaatttctttaatttaaaccatttgatttattttt 22196  T

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Target: scaffold0122 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 16065 - 16126
Alignment:
Q  57 ttttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaa 118  Q
    ||||||||| |||||| ||||||| |||||| |||||  ||||| |||||||||||||||||    
T  16065 ttttaaccttaaatgtctaagatgaaccaactttatagatggtccaccatagaccttattaa 16126  T

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Target: scaffold0201 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 21245 - 21337
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatct 143  Q
    ||||| ||||||| ||||||| || | ||||||||| ||   ||||||| ||||||||| | ||||||||| |||||||||||| ||||||||    
T  21245 gttaagtttaaccacaaatgtctatggtggaccaaccttcagagtggtccaccatagacttcattaattttttaaattttaaccgtttgatct 21337  T

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Target: scaffold0077 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 52709 - 52805
Alignment:
Q  52 gttaattttaacctcaaatgtataagatggaccaacattataagtggtctaccatagaccttattaatttt-taaattttaaccatttgatctattt 147  Q
    ||||| |||||| | ||||||||| | ||||||||| ||| || |||||||   ||||||||||||||||| | ||||||| || || |||||||||    
T  52709 gttaactttaactttaaatgtatatggtggaccaaccttaaaaatggtctatggtagaccttattaattttcttaattttatccgttcgatctattt 52805  T

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