View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3021_high_54 (Length: 244)
Name: NF3021_high_54
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_high_54 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 43928118 - 43927885
Alignment:
| Q |
11 |
cacagaacagttgagaatgcagagtatgatgaaggttctgagaaatggaaggtgaaggctaagaataaggaatctggtgaggttgaggaatatgaaggaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43928118 |
cacagaacagttgagaatgcagagtatgatgaaggttctgagaaatggaaggtgaaggctaagaataaggaatctggtgaggttgaggaatatgaaggaa |
43928019 |
T |
|
| Q |
111 |
ggtttttggttgtagctagtggtgaaactagtgacccttttgtacctgaaattgatgggttgaagagttttactgggaaagtgattcattcaactgggtt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43928018 |
ggtttttggttgtagctagtggtgaaactagtgacccttttgtacctgaaattgatgggttgaagagttttactgggaaagtgattcattcaactgggtt |
43927919 |
T |
|
| Q |
211 |
taagaatgggaaagagtttaaagatgaacatgtt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
43927918 |
taagaatgggaaagagtttaaagatgaacatgtt |
43927885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 244
Target Start/End: Complemental strand, 43939987 - 43939794
Alignment:
| Q |
51 |
agaaatggaaggtgaaggctaagaataaggaatctggtgaggttgaggaatatgaaggaaggtttttggttgtagctagtggtgaaactagtgacccttt |
150 |
Q |
| |
|
||||||||| ||| || ||| |||||||| |||||||| |||||||| ||| | |||||| |||||||| |||||||||||||| ||| ||| |
|
|
| T |
43939987 |
agaaatggagggttaaagctgagaataagagttctggtgaagttgaggagtattctgcaaggttcttggttgttgctagtggtgaaacagctgaacctcg |
43939888 |
T |
|
| Q |
151 |
tgtacctgaaattgatgggttgaagagttttactgggaaagtgattcattcaactgggtttaagaatgggaaagagtttaaagatgaacatgtt |
244 |
Q |
| |
|
|||||||| |||| |||||| ||| ||| | |||||||| |||||||||||| ||| || ||||| |||||||||||||||||||||||| |
|
|
| T |
43939887 |
tgtacctgtggttgaagggttggagaatttcaaagggaaagtaattcattcaactaggtacaaaaatggaaaagagtttaaagatgaacatgtt |
43939794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 15608047 - 15608234
Alignment:
| Q |
51 |
agaaatggaaggtgaaggctaagaataaggaatctggtgaggttgaggaatatgaaggaaggtttttggttgtagctagtggtgaaactagtgacccttt |
150 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| |||||||| |||||||||||||| |||||||||||||| | |||||||| ||||||||||| ||||| |
|
|
| T |
15608047 |
agaaatggaaagtgaaggctatgaataaggattctggtgaagttgaggaatatgatggaaggtttttggtaatggctagtggcgaaactagtgaaccttt |
15608146 |
T |
|
| Q |
151 |
tgtacctgaaattgatgggttgaagagttttactgggaaagtgattcattcaactgggtttaagaatgggaaagagtttaaagatgaa |
238 |
Q |
| |
|
| | ||||||||||| |||| |||||| | | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15608147 |
tctgcctgaaattgaagggtagaagagatgcaatggggaagtgattcattcaactgggtttaagaatgagaaagagtttaaagatgaa |
15608234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University