View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_high_63 (Length: 231)
Name: NF3021_high_63
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_high_63 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 7685016 - 7685185
Alignment:
| Q |
36 |
aattgtgactacacaaagtagcatctcaaaatgcataattgtttacacaacccaacataaaagagcaactcatagttgcattacaccaaagtcacaacat |
135 |
Q |
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| T |
7685016 |
aattgtgactacacaa-gtagcatctcaaaatgcataattgtttacacaacccaacataaaagagcaactcatagttgcattacaccaaagtcacaacat |
7685114 |
T |
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| Q |
136 |
aatggctgcctgataggtctgttattgttagttaagaagtagttatttaagaggttagttaattagttaat |
206 |
Q |
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| T |
7685115 |
aatggctgcctgataggtctgttattgttagttaagaagtagttatttaagaggttagttaattagttaat |
7685185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 44192701 - 44192622
Alignment:
| Q |
132 |
acataatggctgcctgataggtctgttattgttagttaagaagtagttatttaagaggttagttaattagttaatgggtagtt |
214 |
Q |
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| T |
44192701 |
acataatggctgcttgataggtctgttattgttagtt---aagtagttatttaagaggttagttaattggtaaatgggtagtt |
44192622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 44172405 - 44172326
Alignment:
| Q |
132 |
acataatggctgcctgataggtctgttattgttagttaagaagtagttatttaagaggttagttaattagttaatgggtagtt |
214 |
Q |
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| T |
44172405 |
acataatggctgcttgataggtctgttattgttagtt---aagtagttatttaagaggttagttatttggtaaatgggcagtt |
44172326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 36904534 - 36904743
Alignment:
| Q |
1 |
tgtccttcatattccataannnnnnngtattaaaaaattgtgactacacaaagtagcatctcaaaatgcataattgtttacacaacccaacataaaagag |
100 |
Q |
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| T |
36904534 |
tgtccttcatattccataattttattgtatcaaaaaattgtgactacacaa-gtagcatctcaaaatgcataattgtttacacaacccaacataaaagaa |
36904632 |
T |
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| Q |
101 |
caactcatagttgcattacaccaaagtcacaacataatggctgcctgataggtctgttattgttagttaagaagtagttatttaagaggttagttaatta |
200 |
Q |
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| T |
36904633 |
taactcatagttgcattacaccaaagtcacaacataatggctgcttgataggtctgttattgttagtt---aagtagttatttaagaggttagttaattg |
36904729 |
T |
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| Q |
201 |
gttaatgggtagtt |
214 |
Q |
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| T |
36904730 |
gttaatgggtagtt |
36904743 |
T |
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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 214
Target Start/End: Complemental strand, 13674945 - 13674866
Alignment:
| Q |
132 |
acataatggctgcctgataggtctgttattgttagttaagaagtagttatttaagaggttagttaattagttaatgggtagtt |
214 |
Q |
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| T |
13674945 |
acataatggctgcttgataggtctgttattgttagtt---aagtagttatttaagaggttagttatttggtaaatgggcagtt |
13674866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 175
Target Start/End: Original strand, 17215050 - 17215079
Alignment:
| Q |
146 |
tgataggtctgttattgttagttaagaagt |
175 |
Q |
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| T |
17215050 |
tgataggtctgttattgttagttaagaagt |
17215079 |
T |
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