View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_high_70 (Length: 219)
Name: NF3021_high_70
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_high_70 |
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| [»] scaffold0392 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 49536713 - 49536530
Alignment:
| Q |
17 |
cagagaaatgcaggaaggaaaggagaaagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgag |
116 |
Q |
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| T |
49536713 |
cagagaaatgcaggaaggaaaggagaaagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgag |
49536614 |
T |
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| Q |
117 |
aaggtatttgcatagatatagagaattagaggtagatagaacaccaactactactaataatattcaagatagaggaaattaatt |
200 |
Q |
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| T |
49536613 |
aaggtatttgcatagatatagagaattagaggtagatagaacaccaactactactaataatattcaagatagaggaaattaatt |
49536530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 38177028 - 38176846
Alignment:
| Q |
18 |
agagaaatgcaggaaggaaaggagaaagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgaga |
117 |
Q |
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| T |
38177028 |
agagaaatgcaggaaggaaaggagaaagacagtgaatggtgatgatatatgttgggctttggggacacttggttttgatgattatgcttaaccaatgaga |
38176929 |
T |
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| Q |
118 |
aggtatttgcatagatatagagaattagaggtagatagaacaccaactactactaataatattcaagatagaggaaattaatt |
200 |
Q |
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| T |
38176928 |
aggtatttgcatagatatagagaattaggggtagaaagaacaccaactactactaataatattcaagatagaggaaattaatt |
38176846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 39786345 - 39786245
Alignment:
| Q |
43 |
aagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgagaaggtatttgcatagatatagagaat |
142 |
Q |
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| T |
39786345 |
aagacagtgaatggtgatgatgtttgttgggctttggggacactagggtttgatgattacgctgagccactcaaaaggtatttgtataagtatagggaat |
39786246 |
T |
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| Q |
143 |
t |
143 |
Q |
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| T |
39786245 |
t |
39786245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0392 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 14738 - 14611
Alignment:
| Q |
19 |
gagaaatgcaggaaggaaaggagaaagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgagaa |
118 |
Q |
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| T |
14738 |
gagaaatgcaggaaggaaaggagaaagactgtaaatggtgatgatatttgttgggctttagcaacacttggttttgatgattatgctgagccaatgagaa |
14639 |
T |
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| Q |
119 |
ggtatttgcatagatatagagaattaga |
146 |
Q |
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| T |
14638 |
ggtacttgcataggtatagagagttaga |
14611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 7523808 - 7523887
Alignment:
| Q |
123 |
tttgcatagatatagagaattagaggtagatagaacaccaactactactaata--atattcaagatagaggaaattaatt |
200 |
Q |
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| T |
7523808 |
tttgcatagatatagagaattagaggtagatataacaccaactactactaatagtgtattcaagatagaggaaattaatt |
7523887 |
T |
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