View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_high_9 (Length: 547)
Name: NF3021_high_9
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_high_9 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0201 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 547
Target Start/End: Complemental strand, 42692897 - 42692360
Alignment:
| Q |
19 |
aaatgaaaataaattgtaggtataaaatagaaaattgccataataattgttgcaaaatgatcgttcaaatatcatttctcatttcaaaacatgcagtata |
118 |
Q |
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| T |
42692897 |
aaatgaaaataaattataggtatgaaatagaaaattgccataatagtcgttacaaaatgatcgttcaaataacatttctcattttgaaacatgtagtata |
42692798 |
T |
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| Q |
119 |
ctctcttcatttgccaactaattatatctatacttttgatactgatagacgtttcttttt---taaaaaagatccaggatacttcagaaaaagatccagg |
215 |
Q |
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||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42692797 |
ctctcttgatttgccaacaaattctatctatacttttgatactgatagacgtttcttttaatataaaaaagatccaggatacttcagaaaaagatccagg |
42692698 |
T |
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| Q |
216 |
agaagcctttcaattagttagcatcaactttttcctcttatttattgttgcatgcataacgtgcgacgtgcatatatcgtgtgcctcgtgcaaaaaacaa |
315 |
Q |
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| T |
42692697 |
ggaagcctttcaattagttagcatcaactttttcctcttatttattgttgcatgcataacgtgcgacgtgcatatatcgtgtgcctcgtgcaaaaaacaa |
42692598 |
T |
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| Q |
316 |
tgaaattaaagcaagaggcatactctaatnnnnnnngtaaga-gaatactcctttcggtcgcatttat---aagaaaaaacaaccttttaaatttattga |
411 |
Q |
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| T |
42692597 |
tgaaattaaagcaagaggcacactctattaaaaaaagtaagaggaatactcctttcggtcgcatctataaaaaaaaaaaaaaaccttttaaatttatgaa |
42692498 |
T |
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| Q |
412 |
ataattaatttatgtgatatataaatttaacatgtgagggtacatttcaac--nnnnnnngtgagaaatataatacaacagttacaacttcatagtttta |
509 |
Q |
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| T |
42692497 |
ataattaatttatgtgatatataaatttaaaatgtgagagtacatttcaacaaaaaaaaagtgagaaatataatacaacagttacaacttcatagtttta |
42692398 |
T |
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| Q |
510 |
tcatattcattaatatattatcttcttctcactcgacc |
547 |
Q |
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| T |
42692397 |
tcatattcattaatatattatcttcttttaactcgacc |
42692360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 8523 - 8470
Alignment:
| Q |
47 |
agaaaattgccataataattgttgcaaaatgatcgttcaaatatcatttctcat |
100 |
Q |
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| T |
8523 |
agaaagttgtcataaaaattgttaaaaaatgattgttcaaatatcatttctcat |
8470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 35153050 - 35153014
Alignment:
| Q |
63 |
aattgttgcaaaatgatcgttcaaatatcatttctca |
99 |
Q |
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| T |
35153050 |
aattgttacaaaatgattgttcaaatatcatttctca |
35153014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 38779361 - 38779317
Alignment:
| Q |
376 |
catttataagaaaaaacaaccttttaaatttattgaataattaat |
420 |
Q |
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| T |
38779361 |
catttataagaaaaaacaattttttaagtttattaaataattaat |
38779317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 42733576 - 42733640
Alignment:
| Q |
38 |
gtataaaatagaaaattgccataataattgttgcaaaatgatcgttcaaatatcatttctcattt |
102 |
Q |
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| T |
42733576 |
gtataagagagaaaattgtcacaaaaattgtttaaaaatggttgttcaaatatcatttctcattt |
42733640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 417
Target Start/End: Original strand, 20269454 - 20269494
Alignment:
| Q |
377 |
atttataagaaaaaacaaccttttaaatttattgaataatt |
417 |
Q |
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| T |
20269454 |
atttataagaaaaaacaactttttagatatattgaataatt |
20269494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 28499911 - 28499867
Alignment:
| Q |
376 |
catttataagaaaaaacaaccttttaaatttattgaataattaat |
420 |
Q |
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| T |
28499911 |
catttataagaaaaaataactttttagatatattgaataattaat |
28499867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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