View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3021_low_1 (Length: 3662)
Name: NF3021_low_1
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_1 |
 | |
|
| [»] chr6 (15 HSPs) |
| |
|
| [»] scaffold0112 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 2460; Significance: 0; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 2460; E-Value: 0
Query Start/End: Original strand, 907 - 3662
Target Start/End: Complemental strand, 1188962 - 1186204
Alignment:
| Q |
907 |
ttttttggttagtctgatgatctttcaattgagcctgaattatcaaaataagatattgtgttttgaacaatagctcgaaatcttgaaccttggtttgtaa |
1006 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1188962 |
ttttttggttagtctgatgatctttcaattgagcctgaattatcaaaataagatattgtgttttgaacaatagctagaaatcttgaaccttggtttgtaa |
1188863 |
T |
|
| Q |
1007 |
tatcaatggtttgtggttttccattctgtgctcatgatacaatgaattcaatgaagaatcaaaaaactattagtaacttaacatcaatgcttggattcta |
1106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1188862 |
tatcaatggtttgtggttttccattctgtgctcatgatacaatgaattcaatgaagaatcaaaaaactattagtaacttaacatcaatgcttggattcta |
1188763 |
T |
|
| Q |
1107 |
agagtttaaaacccaaattccctactaagccaagtgctcatgatacaatgaaattcaatgaagaattactataggatcacaaagttcatgaacaattttg |
1206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1188762 |
agagtttaaaacccaaattccctactaagccaagtgctcatgatacaatgaaattcaatgaagaattactataggatcacaaagttcatgaacaattttg |
1188663 |
T |
|
| Q |
1207 |
attttctatcgaaacaagaatcccacacccgatcaatatactcccaaacagatagcataaaatgctgccatgaaagaaaaacaattatcacctaacagaa |
1306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1188662 |
attttctatcgaaacaagaatcccacacccgatcaatatactcccaaacagatagcataaaatgctgccatgaaagaaaaacaattatcacctaacagaa |
1188563 |
T |
|
| Q |
1307 |
ataggggatagcataaacgtaatgttgtgttgattaagatagtgaataacatcctaaccaagtgttgtgttatattgtaggttgttgcagccttgaagca |
1406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1188562 |
ataggggatagcataaacgtaatgttgtgttgattaagatagtgaataacatcctaaccaagtgttgtgttatattgtaggttgttgcagccttgaagca |
1188463 |
T |
|
| Q |
1407 |
acttgacagaaaaggatttcaagggaacaaatagtttattttagaggttttgatttggggttttttacaccaccctaaccttgtcaacttggtagaatta |
1506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1188462 |
acttgacagaaaaggatttcaagggaacaaatagtttattttagaggttttgatttggagttttttacaccaccctaaccttgtcagcttggtagaatta |
1188363 |
T |
|
| Q |
1507 |
gatggaaa-gtggcatggtttggtcacagttgaaaatatcattatactagttaagctacatgacaagaatattnnnnnnnntaataagaccaaacgagac |
1605 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
1188362 |
gatggaaaagtggcatggtttggtcacagttgaaaatatcattatactagttaagctacatgacaagaatattaaaaaaaataataagatcaaacgagac |
1188263 |
T |
|
| Q |
1606 |
atgaacttttaggatatcaaatttggtactttgttctccttttacttgatttattgtgttgcttacttgctttgacagaatatgcacgtaggttacaaaa |
1705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1188262 |
atgaacttttaggatatcaaatttggtactttgttctccttttacttgatttattgtgttgcttacttgctttaacagaatatgcacgtaggttacaaaa |
1188163 |
T |
|
| Q |
1706 |
tgattaagtcagcttctaattattatacacactggtcttgttcaaaaaacaattatcatatatgttttggttaaacaaaatgtatgttttggcttctaag |
1805 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1188162 |
tgattaagtcagcttctaattattatatacactggtcttgttcagaaaacaattatcatatatgttttggttaaacaaaatgtatgttttggcttctaag |
1188063 |
T |
|
| Q |
1806 |
tattattatgtattttttggtattgtataatattgttttaaattctgaaaaggatttgaagcatatttgttatcaatcaccatcttgatttgatcaacac |
1905 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1188062 |
tattattatgtattttttggtattgtataatattgttttaaattctaaaaaggatttgaagcatatttgttatcaatcaccatcttcatttgatcaacac |
1187963 |
T |
|
| Q |
1906 |
tcttcaaattgccatactgagtagaaatgttctgaactgctaggaaataataaaatcatctgatcaactcgaatcgaacccaacttatgtataaaataat |
2005 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1187962 |
tcttcaaattgccatactgagtagaaatgttctgaactgctaggaaataataaaatcatctgatcaactcgaatcgaacccaacttacgtataaaataat |
1187863 |
T |
|
| Q |
2006 |
agagaaacatatatgagagatagagagaaagttatggtgacttccccggtaaacctaacccgactaaaaagaaaacaacgcctgtttcatctccaaattc |
2105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1187862 |
agagaaacatatatgagagatagagagaaagttatggtgacttccccggtaaacctaacccgactaaaaagaaaacaacgactgtttcatctccaaattc |
1187763 |
T |
|
| Q |
2106 |
ttttagtgaaaaactgcacccacacccactcgtcttccaatatttannnnnnnnnnnnnnncttctttctaaccctcatctatcatgctggatggtttgt |
2205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1187762 |
ttttagtgaaaaactgcacccacacccactcgtcttccaatatttattttttccttttttttttctttctaaccctcatctatcatgctggatggtttgt |
1187663 |
T |
|
| Q |
2206 |
gcttgttattctttttctgctgttatgtttgtaaaaatccgagtgggagaaaataagatcacttcttttcatatttgctcataaaatttaattgaaacag |
2305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1187662 |
gcttgttattctttttctgctgttatgtttgtaaaaatccgagtgggagaaaataagatcacttcttttcatatttgctcataaaatttaattgaaacag |
1187563 |
T |
|
| Q |
2306 |
gttgcaatacaaattaaacttaccagtgacaattataaaaagagatcgaacttaaatannnnnnngcagtacgaatagttgagagttagaacaaaatgat |
2405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
1187562 |
gttgcaatacaaattaaacttaccagtgacaattataaaaagagatcgaacttaaatatttttttgcagtacgaatacttgagagttagaacaaaatgat |
1187463 |
T |
|
| Q |
2406 |
agtactagatcctttgggtaccgttcaagatttttcaacaaaaaaggatgcaccaacacttagtattcaagaggcaatatcaaacttttaagtaagcatg |
2505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1187462 |
agtactagatcctttgggtaccgttcaagatttttcaacaaaaaaggatgcaccaacacttagtattcaagaggcaatatcaaacttttaagtaagcatg |
1187363 |
T |
|
| Q |
2506 |
tctatctatctattgatcacagcaaaattaaaattctagtctaaagctaannnnnnnnnn-gggttcataagctgacggcgcctctaaaatggtcttaaa |
2604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1187362 |
tctatctatctattgatcacagcaaaattaaaattctagtctaaagctaatatttttttttgggttcataagctgacggcgcctctaaaatggtcttaaa |
1187263 |
T |
|
| Q |
2605 |
acaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtattagaagaaatgcaaaagcaatcgccn |
2704 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1187262 |
acaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtattagaagaaatgcaaaagcaatcgcct |
1187163 |
T |
|
| Q |
2705 |
nnnnnnctcattagcgtctcatagaaaaattgtagttttagatgataaacaaaatagagttagaagtcataagctacacaaaacattaagtattaacaat |
2804 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1187162 |
ttttttctcattagcgtctcatagaaaaattgtagttttagatgataaacaaaatagagttagaagtcataagctacacaaaacattaagtattaacaat |
1187063 |
T |
|
| Q |
2805 |
ttggggttatatgcagttttgcccccttccatttgagcaaaattcagtttaccccctgcnnnnnnn-ttgggattccaacattgtaattcggagattatt |
2903 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1187062 |
ttggggttatatccagttttgcccccttccatttgagcaaaattcagtttaccccctgcaaaaaaaattgggattccaacattgtaattcggagattatt |
1186963 |
T |
|
| Q |
2904 |
tggttttagactttcataacatttgactgtacaaaacggatgatgtggtaggggtaaaccgaaatcctcctaaatgactcggggcaaaaatatctttaat |
3003 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1186962 |
tggttttagactttcataacatttgattgtacaaaacagatgatgtggtaggggtaaaccgaaatcctcccaaatgactcggggcaaaaatatctttaat |
1186863 |
T |
|
| Q |
3004 |
catacaaagttggaagtccaacaaataaatttacagagggtaaac---caaatatcgcacaaatgggaggggccaaaattagtacatttaacccaatgat |
3100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| ||||||||||||||||||| |
|
|
| T |
1186862 |
catacaaagttggaagtccaacaaataaatttacagagggtaaaagtacaaatatcgcacaaatgagagggggcaaaa---gtacatttaacccaatgat |
1186766 |
T |
|
| Q |
3101 |
ttgagcataaatgcaacgtttttgacataaaaggagaacatggcaagacaagttttgttttccttctgtcatataggacaatcccaataagttattaaag |
3200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1186765 |
ttaagcataaatgcaacgtttttgacataaaaggagaacatggcaagacaagttttgttttccttctgtcatataggacaatcacaataagttattaaag |
1186666 |
T |
|
| Q |
3201 |
aatttaattgctcaaagcacgacttaaaattgaaagagcatggaagacaatgacatacctcaatgaatgctttggcgtacgaaaaagaacagaacgtaaa |
3300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1186665 |
aatttaattgctcaaagcacgacttaaaattgaaagagcatggaagacaatgacatacctcaatgaatgctttggcgtacgaaaaagaacagaacgtaaa |
1186566 |
T |
|
| Q |
3301 |
agaaatagttgcaggacaaaagattgaaagtaagatatttacaagaggcgagaatacatatttatcactaggaacatcttttatgacaaagcttttgatg |
3400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1186565 |
agaaatagttgcaggacaaaagattgaaagtaagatatttacaagaggcgagaatacatatttatcactaggaacatcttttatgacaaagcttttgatg |
1186466 |
T |
|
| Q |
3401 |
cttggtggaggagatgaaacctgtaaaacgtctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaa |
3500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1186465 |
cttggtggaggagatgaaacctgtaaaacgtctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaa |
1186366 |
T |
|
| Q |
3501 |
actctcaagaaaggggaatttcggaaacaattcaagaaaccacttgttggtgaaaaaagtactcgccacagacctcaaaaataactctttaaaatttctg |
3600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1186365 |
actctcaagaaaggggaatttcggaaacaattcaagaaaccacttgttggtgaaaaaagtactcgccacagacctcaaaaataactctttaaaatttctg |
1186266 |
T |
|
| Q |
3601 |
cacctatcaatatcgataatagatggtacaccgtaattttgattaccaggagaataacataa |
3662 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1186265 |
cacctatcaatatcgataatagatggtacaccgtaattttgattaccaggagaataacataa |
1186204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-53
Query Start/End: Original strand, 2588 - 2808
Target Start/End: Complemental strand, 1182057 - 1181837
Alignment:
| Q |
2588 |
tctaaaatggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtattagaagaaa |
2687 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| | | || ||||| |
|
|
| T |
1182057 |
tctaaaattgtgttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagtcatgccaccaacacttaatttcagcagaaa |
1181958 |
T |
|
| Q |
2688 |
tgcaaaagcaatcgccnnnnnnnctcattagcgtctcatagaaaaattgtagttttagatgataaacaaaatagagttagaagtcataagctacacaaaa |
2787 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| ||| |||| ||| | || |
|
|
| T |
1181957 |
tgcaaaagcaatcgtctttttttctcattagcgtctcatagaaaatctgcagttttagatgataaacaaaatagagtcagaactcacaagccacatataa |
1181858 |
T |
|
| Q |
2788 |
cattaagtattaacaatttgg |
2808 |
Q |
| |
|
|||||| ||| |||| ||||| |
|
|
| T |
1181857 |
cattaattataaacattttgg |
1181837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-51
Query Start/End: Original strand, 3432 - 3638
Target Start/End: Complemental strand, 1181057 - 1180854
Alignment:
| Q |
3432 |
ctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaagaaaggggaatttcggaaacaat |
3531 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||| ||| |||| |||||| | ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1181057 |
ctccaatctcttaagtcgaacacttgaaatatcaatcttcttaggcattttacaattgtttaatttcaaactctcaagaaaagggaatttcggaaacaat |
1180958 |
T |
|
| Q |
3532 |
tcaagaaaccacttgttggtgaaaaaagtactcgccacagacctcaaaaataactctttaaaatttctgcacctatcaatatcgataatagatggtacac |
3631 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||| ||| |||||||||| |||||||| |||||||||| ||| || |||||||| ||| |
|
|
| T |
1180957 |
tcaagaaaccacttgtttgt---tgaagtactctccacagaccacaagtataactcttttaaatttctacacctatcaaaatcaatcttagatggtgcac |
1180861 |
T |
|
| Q |
3632 |
cgtaatt |
3638 |
Q |
| |
|
||||||| |
|
|
| T |
1180860 |
cgtaatt |
1180854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 9e-51
Query Start/End: Original strand, 2588 - 2842
Target Start/End: Complemental strand, 1192985 - 1192727
Alignment:
| Q |
2588 |
tctaaaatggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtattagaagaaa |
2687 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || | || ||||| |
|
|
| T |
1192985 |
tctaaaattgtgttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaa |
1192886 |
T |
|
| Q |
2688 |
tgcaaaagcaatcg---ccnnnnnnnctcattagcgtctcatagaaaaattgtagttttagatgataaac-aaaatagagttagaagtcataagctacac |
2783 |
Q |
| |
|
|||||||||||| | | | ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| ||| |||| |||| |
|
|
| T |
1192885 |
tgcaaaagcaattgttctctttttttcccattagcgtctcatacaaaaactgtagttttagatgataaacaaaaatagagttagaactcacaagccacac |
1192786 |
T |
|
| Q |
2784 |
aaaacattaagtattaacaatttggggttatatgcagttttgcccccttccatttgagc |
2842 |
Q |
| |
|
| |||||||| ||| || | ||| |||| ||||| ||||||||| || ||||||||| |
|
|
| T |
1192785 |
ataacattaattataaatattttttagttaaatgcacttttgccccttttcatttgagc |
1192727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 101; E-Value: 6e-49
Query Start/End: Original strand, 3104 - 3289
Target Start/End: Complemental strand, 1197245 - 1197058
Alignment:
| Q |
3104 |
agcataaatgcaacgtttttgacataaaaggagaacatggcaagacaagttttgttttcc--ttctgtcatataggacaatcccaataagttattaaaga |
3201 |
Q |
| |
|
|||||||||| ||| | ||||||| ||||||| ||||||||||||||||||| ||| || |||||||||||||||||||| ||||| || || ||||| |
|
|
| T |
1197245 |
agcataaatgtaacatgtttgacaaaaaaggaaaacatggcaagacaagtttcctttcccccttctgtcatataggacaatcacaatatgtcatgaaaga |
1197146 |
T |
|
| Q |
3202 |
atttaattgctcaaagcacgacttaaaattgaaagagcatggaagacaatgacatacctcaatgaatgctttggcgtacgaaaaagaa |
3289 |
Q |
| |
|
|||| |||||| |||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
1197145 |
atttcattgcttaaagcacgacttaaaatttaaggagcatggaagacaatgacataccttaatgaatgctttggcgcatgaaaaagaa |
1197058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 97; E-Value: 1e-46
Query Start/End: Original strand, 3186 - 3416
Target Start/End: Complemental strand, 1192419 - 1192192
Alignment:
| Q |
3186 |
aataagttattaaagaatttaattgctcaaagcacgacttaaaattgaaagagcatggaagacaatgacatacctcaatgaatgctttggcgtacgaaaa |
3285 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||| |||| | || ||| |
|
|
| T |
1192419 |
aatatgttattaaagaatttcattgctcaaagcacaacttaaaattt---gagcatgggagacaatgacatacctcaatgaatggtttgctgaactcaaa |
1192323 |
T |
|
| Q |
3286 |
agaacagaacgtaaaagaaatagttgcaggacaaaagattgaaagtaagatatttacaagaggcgagaatacatatttatcactaggaacatcttttatg |
3385 |
Q |
| |
|
| || ||||||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||| ||||| || ||||||||||| | | ||| |
|
|
| T |
1192322 |
aaaagtgaacgtaaaagaaatagtttcaggacagcagcttgaaagtaagatatttacaagagacgagaataaatattcattactaggaacatttctcatg |
1192223 |
T |
|
| Q |
3386 |
acaaagcttttgatgcttggtggaggagatg |
3416 |
Q |
| |
|
|| || |||| ||||||||||||| ||||| |
|
|
| T |
1192222 |
accaaattttttatgcttggtggagaagatg |
1192192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-45
Query Start/End: Original strand, 1062 - 1183
Target Start/End: Complemental strand, 897942 - 897823
Alignment:
| Q |
1062 |
gaatcaaaaaactattagtaacttaacatcaatgcttggattctaagagtttaaaacccaaattccctactaagccaagtgctcatgatacaatgaaatt |
1161 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| |
|
|
| T |
897942 |
gaatcaacaaactattagtaacttaacatcaatgcttggattc--agagtttaaaacccaaatttcctactaagccaagtgctcatgatatagtgaaatt |
897845 |
T |
|
| Q |
1162 |
caatgaagaattactataggat |
1183 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
897844 |
caatgaagaattactataggat |
897823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 92; E-Value: 1e-43
Query Start/End: Original strand, 2588 - 2766
Target Start/End: Complemental strand, 896864 - 896682
Alignment:
| Q |
2588 |
tctaaaatggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtattagaagaaa |
2687 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||| || | || ||||| |
|
|
| T |
896864 |
tctaaaattgtgttaaaacaaacattctcatcaatctccttagagcttatgactttcacatccttcaagccatgccaccaacacttagtttcagcagaaa |
896765 |
T |
|
| Q |
2688 |
---tgcaaaagcaatcg-ccnnnnnnnctcattagcgtctcatagaaaaattgtagttttagatgataaacaaaatagagtta |
2766 |
Q |
| |
|
|||||||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
896764 |
tgctgcaaaagcaatcgttctttttttcccattagcgtctcatagaaaaactgtagttttagatgataaacaaaatagagtta |
896682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 71; E-Value: 5e-31
Query Start/End: Original strand, 2597 - 2783
Target Start/End: Complemental strand, 1197503 - 1197314
Alignment:
| Q |
2597 |
gtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtattagaagaaatgcaaaagc |
2696 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| ||| ||||||||||||||||||||| |||||||||||||||| |||| | |||| ||||||||| |
|
|
| T |
1197503 |
gtcttaaaatcaacattctcatcgatcttcatagtgctcgtgactttcacatccttcaagtcatgccaccaacactttgtatcatcagaactgcaaaagc |
1197404 |
T |
|
| Q |
2697 |
aatcg---ccnnnnnnnctcattagcgtctcatagaaaaattgtagttttagatgataaacaaaatagagttagaagtcataagctacac |
2783 |
Q |
| |
|
| ||| ||||||| ||||||||||||||| ||||||| | || ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
1197403 |
agtcgttctttttttttctcattaacgtctcatagaaaaactgtagttatcgacgattaacaaaatagagttagaagtcaaaagctacac |
1197314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-17
Query Start/End: Original strand, 962 - 1033
Target Start/End: Complemental strand, 1194471 - 1194400
Alignment:
| Q |
962 |
ttgtgttttgaacaatagctcgaaatcttgaaccttggtttgtaatatcaatggtttgtggttttccattct |
1033 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||||| ||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
1194471 |
ttgtgtttagaacaatagctagaaatcttggaccttagtttgtaatatcaatagtttgtggtattccattct |
1194400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.00000000002
Query Start/End: Original strand, 3245 - 3346
Target Start/End: Complemental strand, 1181605 - 1181504
Alignment:
| Q |
3245 |
agacaatgacatacctcaatgaatgctttggcgtacgaaaaagaacagaacgtaaaagaaatagttgcaggacaaaagattgaaagtaagatatttacaa |
3344 |
Q |
| |
|
||||||||||||||||||||||||| |||| | || ||| || |||| ||||||||| |||| ||||||| || ||||||||||||||||||||| |
|
|
| T |
1181605 |
agacaatgacatacctcaatgaatgttttgctgaacttaaataaatcgaacctaaaagaaacagtttcaggacagcagcttgaaagtaagatatttacaa |
1181506 |
T |
|
| Q |
3345 |
ga |
3346 |
Q |
| |
|
|| |
|
|
| T |
1181505 |
ga |
1181504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.0000000004
Query Start/End: Original strand, 1131 - 1215
Target Start/End: Complemental strand, 1194302 - 1194227
Alignment:
| Q |
1131 |
ctaagccaagtgctcatgatacaatgaaattcaatgaagaattactataggatcacaaagttcatgaacaattttgattttctat |
1215 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1194302 |
ctaagccaactgctcatgatacaattaa-ttcaatgaataatta--------tcacaaagttcatgaacaattttgattttctat |
1194227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000009
Query Start/End: Original strand, 2598 - 2629
Target Start/End: Original strand, 887884 - 887915
Alignment:
| Q |
2598 |
tcttaaaacaaacattctcatcaatcttcata |
2629 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
887884 |
tcttaaaacaaacattctcatcaatcttcata |
887915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000009
Query Start/End: Original strand, 2874 - 2956
Target Start/End: Complemental strand, 1181769 - 1181686
Alignment:
| Q |
2874 |
ggattccaacattgtaattcggagattatttgg-ttttagactttcataacatttgactgtacaaaacggatgatgtggtaggg |
2956 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||| || | ||||||||| ||||||| |||||||||| |||| |
|
|
| T |
1181769 |
ggattccaacattgtaatttagagattatttggtttttagaccctcgtgacatttgaccatacaaaatagatgatgtggcaggg |
1181686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 1168 - 1198
Target Start/End: Original strand, 887853 - 887883
Alignment:
| Q |
1168 |
agaattactataggatcacaaagttcatgaa |
1198 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
887853 |
agaattactataggatcacaaagttcatgaa |
887883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 3e-60; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-60
Query Start/End: Original strand, 2571 - 2842
Target Start/End: Complemental strand, 10203476 - 10203202
Alignment:
| Q |
2571 |
cataagctgacggcgcctctaaaatggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaaca |
2670 |
Q |
| |
|
||||||||| || || |||||||| || ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10203476 |
cataagctggcgacgaatctaaaattgtgttaaaacaaacattctcatcaatcttcttagagcttatgactttcacatccttcaagccatgccaccaaca |
10203377 |
T |
|
| Q |
2671 |
cttcgtattagaagaaatgcaaaagcaatcg---ccnnnnnnnctcattagcgtctcatagaaaaattgtagttttagatgataaacaaaatagagttag |
2767 |
Q |
| |
|
||| || | || ||||||||||||||||||| | | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10203376 |
cttagtttcagtagaaatgcaaaagcaatcgttctctttttttcccattagcgtctcataaaaaaactgtagttttagatgataaacaaaatagagttag |
10203277 |
T |
|
| Q |
2768 |
aagtcataagctacacaaaacattaagtattaacaatttggggttatatgcagttttgcccccttccatttgagc |
2842 |
Q |
| |
|
|| ||| |||| ||| |||||||||| ||| |||| ||||| | || ||||| |||| |||| || ||||||||| |
|
|
| T |
10203276 |
aactcacaagccacagaaaacattaattataaacattttggagataaatgcacttttaccccttttcatttgagc |
10203202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-18
Query Start/End: Original strand, 1131 - 1215
Target Start/End: Complemental strand, 10204155 - 10204072
Alignment:
| Q |
1131 |
ctaagccaagtgctcatgatacaatgaaattcaatgaagaattactataggatcacaaagttcatgaacaattttgattttctat |
1215 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||||||| |||||||||||||| ||||||||||||| ||||||||| ||||| |
|
|
| T |
10204155 |
ctaagccaagtgcttatgatacaattaa-ttcaatgaagtattactataggatccaaaagttcatgaacgattttgattctctat |
10204072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-16
Query Start/End: Original strand, 3454 - 3547
Target Start/End: Complemental strand, 10202969 - 10202876
Alignment:
| Q |
3454 |
cttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaagaaaggggaatttcggaaacaattcaagaaaccacttgt |
3547 |
Q |
| |
|
||||||||||||||| | ||||| || |||||| | ||| | |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10202969 |
cttgaaatatcaatcttttcaggcatgtcacaagaatttaaaataaaactctcaagaaaagggaatttcggaaacaattcaagaaaccacttgt |
10202876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.00000000000002
Query Start/End: Original strand, 2597 - 2787
Target Start/End: Complemental strand, 49611969 - 49611776
Alignment:
| Q |
2597 |
gtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtattagaagaaatgcaaaagc |
2696 |
Q |
| |
|
||||||||| ||||||||||||||| ||| | || ||| |||||||| ||||||||||||||||||||||||||| |||| | |||| ||||| || |
|
|
| T |
49611969 |
gtcttaaaatcaacattctcatcaattttctttgaagttgagactttcaaatccttcaagccatgccaccaacacttggtatcactagaaccgcaaacgc |
49611870 |
T |
|
| Q |
2697 |
aa---tcgccnnnnnnnctcattagcgtctcatagaaaaattgtagttttagatgataaacaaaatagagttagaagtcataagctacacaaaa |
2787 |
Q |
| |
|
|| ||| | |||||||| ||||| |||||||| ||||||||| || || ||||||||| ||||| || ||| ||||| ||||||| |
|
|
| T |
49611869 |
aatcgtcgtcttttcttctcattagtgtctcgtagaaaaactgtagttttggacaattaacaaaatatagttataactcagaagctccacaaaa |
49611776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 792 - 882
Target Start/End: Complemental strand, 37324071 - 37323981
Alignment:
| Q |
792 |
taatcttgataataaccaaaaacaaaacacggtacaaaacaatcatcacaaataagatttcaagatcaacccactttgaataattcatgtt |
882 |
Q |
| |
|
|||| ||||||||||| | ||||||||| || ||||||||||||||| | | || ||| ||||||||||||| ||||| ||| ||||||| |
|
|
| T |
37324071 |
taattttgataataacaagaaacaaaactcgatacaaaacaatcatccctagcaaaattgcaagatcaacccattttgagtaactcatgtt |
37323981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000005
Query Start/End: Original strand, 962 - 1035
Target Start/End: Original strand, 5510464 - 5510537
Alignment:
| Q |
962 |
ttgtgttttgaacaatagctcgaaatcttgaaccttggtttgtaatatcaatggtttgtggttttccattctgt |
1035 |
Q |
| |
|
|||||||||||| |||| || |||||| || ||||||||||||||||||| | |||||||||||| |||||| |
|
|
| T |
5510464 |
ttgtgttttgaataatatctagaaatcctggaccttggtttgtaatatcactaaattgtggttttcctttctgt |
5510537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 983 - 1013
Target Start/End: Complemental strand, 10204195 - 10204165
Alignment:
| Q |
983 |
gaaatcttgaaccttggtttgtaatatcaat |
1013 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10204195 |
gaaatcttgaaccttggtttgtaatatcaat |
10204165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 3432 - 3542
Target Start/End: Complemental strand, 49611073 - 49610963
Alignment:
| Q |
3432 |
ctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaagaaaggggaatttcggaaacaat |
3531 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||| |||||| ||| ||||| | |||||||| ||||||| || ||||||||| |||||| |
|
|
| T |
49611073 |
ctccaacaccttaagttgaacacttgaaatattaatcgtctcagacattgtgcaattggcaaatttcaatatctcaaggaaagggaatttcaaaaacaaa |
49610974 |
T |
|
| Q |
3532 |
tcaagaaacca |
3542 |
Q |
| |
|
||||||||||| |
|
|
| T |
49610973 |
tcaagaaacca |
49610963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-30; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-30
Query Start/End: Original strand, 2608 - 2697
Target Start/End: Complemental strand, 5171649 - 5171560
Alignment:
| Q |
2608 |
aacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtattagaagaaatgcaaaagca |
2697 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| |
|
|
| T |
5171649 |
aacattctcgtcaatcttcatagagcttgtaactttcacatccttcaagccatgccaccaacacttggtatcacaagaaatgcaaaagca |
5171560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-24
Query Start/End: Original strand, 2588 - 2671
Target Start/End: Complemental strand, 5207201 - 5207118
Alignment:
| Q |
2588 |
tctaaaatggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacac |
2671 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5207201 |
tctaacatggtcttgaaatcaacattctcatcaatcttcatagagctcgtgacttttacatccttcaagccatgccaccaacac |
5207118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-19
Query Start/End: Original strand, 2594 - 2697
Target Start/End: Complemental strand, 5195197 - 5195094
Alignment:
| Q |
2594 |
atggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtattagaagaaatgcaaa |
2693 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |||| | |||| |||||| |
|
|
| T |
5195197 |
atggtcttgaaatcaatattctcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcaaa |
5195098 |
T |
|
| Q |
2694 |
agca |
2697 |
Q |
| |
|
|||| |
|
|
| T |
5195097 |
agca |
5195094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-18
Query Start/End: Original strand, 2594 - 2678
Target Start/End: Original strand, 1795806 - 1795890
Alignment:
| Q |
2594 |
atggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtat |
2678 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
1795806 |
atggtcttgaaatcaatattctcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccaccaacacttagtat |
1795890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-17
Query Start/End: Original strand, 2615 - 2678
Target Start/End: Complemental strand, 5185182 - 5185119
Alignment:
| Q |
2615 |
tcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtat |
2678 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
5185182 |
tcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagtat |
5185119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-17
Query Start/End: Original strand, 2594 - 2697
Target Start/End: Original strand, 5198889 - 5198992
Alignment:
| Q |
2594 |
atggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtattagaagaaatgcaaa |
2693 |
Q |
| |
|
|||||||| ||| || ||| ||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |||| | |||| |||||| |
|
|
| T |
5198889 |
atggtcttgaaatcaatattatcatcaatcttcaccgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcaaa |
5198988 |
T |
|
| Q |
2694 |
agca |
2697 |
Q |
| |
|
|||| |
|
|
| T |
5198989 |
agca |
5198992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000006
Query Start/End: Original strand, 2615 - 2678
Target Start/End: Complemental strand, 5177740 - 5177677
Alignment:
| Q |
2615 |
tcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtat |
2678 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
5177740 |
tcatcaatcttcactgagcttatgactttcacattcttcaagccatgccaccaacacttagtat |
5177677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000006
Query Start/End: Original strand, 2594 - 2697
Target Start/End: Complemental strand, 6231713 - 6231610
Alignment:
| Q |
2594 |
atggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtattagaagaaatgcaaa |
2693 |
Q |
| |
|
|||||||| ||| || ||||| |||| |||||| |||||| |||||||||||| |||||||||||||||||||||||| |||| | |||| |||||| |
|
|
| T |
6231713 |
atggtcttgaaatcaatattcttatcattcttcaatgagcttatgactttcacattcttcaagccatgccaccaacacttagtatcactagaactgcaaa |
6231614 |
T |
|
| Q |
2694 |
agca |
2697 |
Q |
| |
|
|||| |
|
|
| T |
6231613 |
agca |
6231610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.00000000002
Query Start/End: Original strand, 3432 - 3553
Target Start/End: Complemental strand, 5175032 - 5174911
Alignment:
| Q |
3432 |
ctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaagaaaggggaatttcggaaacaat |
3531 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||| |||| | || ||||| || ||||||||||||||||| || || ||||| ||||||| | |
|
|
| T |
5175032 |
ctccaacaccttaagttgaacacttgaaatattaatcttctcggacatagtgcaattgtccaatttcaaactctcaaggaaaggaaatttaggaaacagt |
5174933 |
T |
|
| Q |
3532 |
tcaagaaaccacttgttggtga |
3553 |
Q |
| |
|
||||||||||| |||| ||||| |
|
|
| T |
5174932 |
tcaagaaaccatttgtcggtga |
5174911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 26131039 - 26130972
Alignment:
| Q |
50 |
gcaagcacccacgacatattcatcaaatcaaattctttacttttgacggcacattcaatctccaaata |
117 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||||||||||||| ||| || ||||||||||||||| |
|
|
| T |
26131039 |
gcaaacacccacgacacattcgccaaatcaaattctttactttttgcggaactttcaatctccaaata |
26130972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 1604 - 1666
Target Start/End: Original strand, 11550858 - 11550920
Alignment:
| Q |
1604 |
acatgaacttttaggatatcaaatttggtactttgttctccttttacttgatttattgtgttg |
1666 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
11550858 |
acatgaacttttaggatatgaatattggtactttgttctgcttttactctatttattttgttg |
11550920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000005
Query Start/End: Original strand, 3214 - 3275
Target Start/End: Complemental strand, 5204751 - 5204690
Alignment:
| Q |
3214 |
aaagcacgacttaaaattgaaagagcatggaagacaatgacatacctcaatgaatgctttgg |
3275 |
Q |
| |
|
||||||| |||| ||||| ||||| ||||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
5204751 |
aaagcacaacttgaaattaaaagaacatgggagagaatgacatacctctatgaatgctttgg |
5204690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000005
Query Start/End: Original strand, 3432 - 3553
Target Start/End: Complemental strand, 6230616 - 6230495
Alignment:
| Q |
3432 |
ctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaagaaaggggaatttcggaaacaat |
3531 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||||||||| | ||| ||||| || ||||||||||||||||| || | ||||| ||||| | |
|
|
| T |
6230616 |
ctccaacaccttaagttgaacacttgaaatattaatcctctcggccattgtacaatcatccaatttcaaactctcaaggaaacgaaattttctaaacagt |
6230517 |
T |
|
| Q |
3532 |
tcaagaaaccacttgttggtga |
3553 |
Q |
| |
|
||||||||||| |||| ||||| |
|
|
| T |
6230516 |
tcaagaaaccatttgtcggtga |
6230495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000005
Query Start/End: Original strand, 609 - 646
Target Start/End: Complemental strand, 44887481 - 44887444
Alignment:
| Q |
609 |
aacataaataattttacattcaacttatttttaattaa |
646 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44887481 |
aacataaattattttacattcaacttatttttaattaa |
44887444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-19; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-19
Query Start/End: Original strand, 2588 - 2678
Target Start/End: Complemental strand, 5178901 - 5178811
Alignment:
| Q |
2588 |
tctaaaatggtcttaaaacaaacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtat |
2678 |
Q |
| |
|
|||| ||||||||| ||| || ||| |||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
5178901 |
tctagaatggtcttgaaatcaatattatcatcaatcttcattgagcttatgactttcacattcttcaagccatgccaccaacacttagtat |
5178811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-19
Query Start/End: Original strand, 2608 - 2678
Target Start/End: Complemental strand, 8306820 - 8306750
Alignment:
| Q |
2608 |
aacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtat |
2678 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
8306820 |
aacattctcatcaattttcattgagcgtgtgactttcaaatccttcaagccatgccaccaacactttgtat |
8306750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.00000000000002
Query Start/End: Original strand, 2608 - 2791
Target Start/End: Original strand, 8551773 - 8551956
Alignment:
| Q |
2608 |
aacattctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccaccaacacttcgtattagaagaaatgcaaaagcaatcgccnnnn |
2707 |
Q |
| |
|
||||||||||||||| ||||| ||| || |||||||| || ||||||||||||||||||||| || |||| | ||| |||||||||| ||| | |
|
|
| T |
8551773 |
aacattctcatcaattttcattgagtgtgcgactttcaaattcttcaagccatgccaccaacaattggtatcactagagctgcaaaagcagtcgtctttt |
8551872 |
T |
|
| Q |
2708 |
nnnctcattagcgtctcatagaaaaattgtagttttagatgataaacaaaatagagttagaagtcataagctacacaaaacatt |
2791 |
Q |
| |
|
||||| || |||||||||||||| ||||||||| || || || ||||||| |||| || ||| ||||| |||| |||||| |
|
|
| T |
8551873 |
cttctcatcagagtctcatagaaaaactgtagttttggacaattaataaaatagcgttataactcagaagctccacataacatt |
8551956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 3432 - 3547
Target Start/End: Original strand, 8552662 - 8552777
Alignment:
| Q |
3432 |
ctccaacctcttaagtcgaacacttgaaatatcaatcctctcaggaatttcacaattttctaatttcaaactctcaagaaaggggaatttcggaaacaat |
3531 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||| |||||| ||| || || | |||||||| |||||||| || |||||||||| ||||||| |
|
|
| T |
8552662 |
ctccaacaccttaagttgaacacttgaaatattaatcgtctcagacattgtgcatttgacaaatttcaatctctcaaggaaagggaatttcgaaaacaat |
8552761 |
T |
|
| Q |
3532 |
tcaagaaaccacttgt |
3547 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
8552762 |
tcaagaaaccatttgt |
8552777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 2886 - 2968
Target Start/End: Complemental strand, 2936373 - 2936291
Alignment:
| Q |
2886 |
tgtaattcggagattatttggttttagactttcataacatttgactgtacaaaacggatgatgtggtaggggtaaaccgaaat |
2968 |
Q |
| |
|
||||||| | ||||| ||||||||| ||| ||||||| ||||||||||||||| |||||| || ||||||||||| |||| |
|
|
| T |
2936373 |
tgtaatttgaagattctttggttttcgaccttcataaattttgactgtacaaaatcgatgatatgacaggggtaaacccaaat |
2936291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-17
Query Start/End: Original strand, 1352 - 1501
Target Start/End: Complemental strand, 19994884 - 19994738
Alignment:
| Q |
1352 |
ataacatcctaaccaagtgttgtgttatattgtaggttgttgcagccttgaagcaacttgacagaaaaggatttcaagggaacaaatagtttattttaga |
1451 |
Q |
| |
|
|||||||||||| |||||| | ||||| |||| || ||||||| | ||||| |||||||||||| |||||||||||||||| | | || || |||| |
|
|
| T |
19994884 |
ataacatcctaatcaagtgctttgttacattgcagattgttgctg---tgaaggcacttgacagaaatggatttcaagggaacagagaattccttgtaga |
19994788 |
T |
|
| Q |
1452 |
ggttttgatttggggttttttacaccaccctaaccttgtcaacttggtag |
1501 |
Q |
| |
|
||||||||||| | || |||| ||||| ||||||||||| |||||||||| |
|
|
| T |
19994787 |
ggttttgattttgagtcttttgcaccatcctaaccttgttaacttggtag |
19994738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000006
Query Start/End: Original strand, 1591 - 1649
Target Start/End: Complemental strand, 24838720 - 24838662
Alignment:
| Q |
1591 |
aagaccaaacgagacatgaacttttaggatatcaaatttggtactttgttctcctttta |
1649 |
Q |
| |
|
||||||||| || ||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24838720 |
aagaccaaatgaagcattaacttttaggatatcaaatttggtactttgttttcctttta |
24838662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000009
Query Start/End: Original strand, 1400 - 1500
Target Start/End: Complemental strand, 19999062 - 19998962
Alignment:
| Q |
1400 |
tgaagcaacttgacagaaaaggatttcaagggaacaaatagtttattttagaggttttgatttggggttttttacaccaccctaaccttgtcaacttggt |
1499 |
Q |
| |
|
|||| ||| |||||||||| |||||||||||||||| ||||| || ||||||||||||||| | || |||| | |||||||||||||||||| ||| |
|
|
| T |
19999062 |
tgaaacaatttgacagaaatggatttcaagggaacagggagtttcttgtagaggttttgattttgagtcttttgcgtaaccctaaccttgtcaactaggt |
19998963 |
T |
|
| Q |
1500 |
a |
1500 |
Q |
| |
|
| |
|
|
| T |
19998962 |
a |
19998962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-16
Query Start/End: Original strand, 280 - 385
Target Start/End: Original strand, 10172534 - 10172640
Alignment:
| Q |
280 |
gtgtaaaatgatttatgtggatcaaatgctatttg-taaggtttattgttcgcaactcctatggttcaaattagctttaggagatgaccaattacaaaag |
378 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| |||| || |||||||||||| |||| ||||| | |||||||||||||| ||||||| ||| ||||||| |
|
|
| T |
10172534 |
gtgtgaaatgatttttgtggatcaaatgctttttgatagggtttattgttcacaacccctattgatcaaattagctttacgagatgaataatcacaaaag |
10172633 |
T |
|
| Q |
379 |
tacaaca |
385 |
Q |
| |
|
|| |||| |
|
|
| T |
10172634 |
tataaca |
10172640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000009
Query Start/End: Original strand, 2611 - 2667
Target Start/End: Original strand, 14878124 - 14878180
Alignment:
| Q |
2611 |
attctcatcaatcttcatagagcttgtgactttcacatccttcaagccatgccacca |
2667 |
Q |
| |
|
||||| |||||| ||||||| ||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
14878124 |
attcttatcaatattcatagcgctagtgacttttacatccttcaagccatgccacca |
14878180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 15617347 - 15617293
Alignment:
| Q |
76 |
atcaaattctttacttttgacggcacattcaatctccaaatatcataccaatatc |
130 |
Q |
| |
|
||||||||||||||||||| ||||| |||| |||| |||||||||||||||||| |
|
|
| T |
15617347 |
atcaaattctttacttttggaggcactttcagtctctaaatatcataccaatatc |
15617293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.000000001
Query Start/End: Original strand, 597 - 643
Target Start/End: Original strand, 42773135 - 42773181
Alignment:
| Q |
597 |
taaatgtatcccaacataaataattttacattcaacttatttttaat |
643 |
Q |
| |
|
||||||||| | |||||||||| |||||||||||||||||||||||| |
|
|
| T |
42773135 |
taaatgtattcaaacataaatagttttacattcaacttatttttaat |
42773181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000005
Query Start/End: Original strand, 2871 - 2981
Target Start/End: Original strand, 32928691 - 32928799
Alignment:
| Q |
2871 |
ttgggattccaacattgtaattcggagattatttggttttagactttcataacatttgactgtacaaaacggatgatgtggtag-gggtaaaccgaaatc |
2969 |
Q |
| |
|
||||||||||||| |||||||| ||| | |||| |||||||| |||||| ||||||||||||||||| ||||||||| || ||||||||| |||| |
|
|
| T |
32928691 |
ttgggattccaaccttgtaatttaaagaatctttgcttttagaccttcatagcatttgactgtacaaaa---atgatgtggcagagggtaaaccaaaatt |
32928787 |
T |
|
| Q |
2970 |
ctcctaaatgac |
2981 |
Q |
| |
|
| || ||||||| |
|
|
| T |
32928788 |
cgcccaaatgac |
32928799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 31; Significance: 0.0000003; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 33595 - 33549
Alignment:
| Q |
136 |
ggaatataaagcattcttctcaactttccatattaacatgtcatcca |
182 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| | ||||||| |
|
|
| T |
33595 |
ggaatataaaccattcttctcagctttccatattaacctatcatcca |
33549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University