View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_low_10 (Length: 669)

Name: NF3021_low_10
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_low_10
NF3021_low_10
[»] chr1 (1 HSPs)
chr1 (9-654)||(47836245-47836883)
[»] chr2 (2 HSPs)
chr2 (468-636)||(45393958-45394120)
chr2 (116-158)||(11650798-11650840)
[»] chr4 (5 HSPs)
chr4 (173-236)||(29779138-29779202)
chr4 (477-547)||(13539205-13539275)
chr4 (584-638)||(13539294-13539348)
chr4 (463-530)||(52740534-52740601)
chr4 (173-234)||(17898212-17898274)
[»] chr7 (2 HSPs)
chr7 (477-547)||(9668181-9668251)
chr7 (584-638)||(9668270-9668324)
[»] chr6 (1 HSPs)
chr6 (173-229)||(1872308-1872365)
[»] chr3 (1 HSPs)
chr3 (185-234)||(46870357-46870407)
[»] chr8 (1 HSPs)
chr8 (602-654)||(35782212-35782264)
[»] chr5 (1 HSPs)
chr5 (173-236)||(1879094-1879158)


Alignment Details
Target: chr1 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 9 - 654
Target Start/End: Complemental strand, 47836883 - 47836245
Alignment:
Q  9 gaaatgaaaattagcttgataaaaattccagacagatacaacacagcaagcctcagcaaaggcgagaggccaattgtagaaaaacacaactagtttttcg 108  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  47836883 gaaatgaaaattagcttgataaaaattccagacagatacaa-acagcaagcctcagcaaaggcgagaggacaattgtagaaaaacacaattagtttttcg 47836785  T
Q  109 cgatacaaaggctaacatcacttttagaagacaaacttcaaattttaacttctaagtaaaaataaattctacaagcaaaatcaattttccttttaatcat 208  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  47836784 caatacaaaggctaacatcacttttagaagacaaacttcaaattttaacttc-aagtaaaaataaattctacaagcaaaatcaattttccttttaatcat 47836686  T
Q  209 ccaacatgataaaatcaattcaacaatcacttttgattctccaaaaatgaaaccaaatattatttatttattcattatagataggagttgaaccaataca 308  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47836685 caaacatgataaaatcaattcaacaatcactttt-attctccaaaaatgaaaccaaatattatttatttattcattatagataggagttgaaccaataca 47836587  T
Q  309 tttttctttaagcattaaattttgttgggctgatcttgaatgcccctaacctgccaatacctactattgtttactgataattgacaattctagattggca 408  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  47836586 tttctctttaagcattaaattttgttgggctgatcttgaatgcccctaacctgccaatacctactactgtttactggtaattgacaattctagattggca 47836487  T
Q  409 ttgttggagatgtcgagaagaatataaattatgttcaattacacacccttaatcctcaaaaatggacaccataaattgtttaagctcttcactactcata 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||    
T  47836486 ttgttggagatgtcgagaagaatataaattatgttcaattacacacccttaatcctc-aaaatggacaccataaattgttcaagcacttcactactcata 47836388  T
Q  509 ttgtcaattgaatcattccaccaatcacctttcttcaaaaacttggccgccaaaatttcagtatctgctagtttcttcttcttctctaactctaacatct 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||   |||||||||||||||||||||||||    
T  47836387 ttgtcaattgaatcattccaccaatcacctttcttcaaaaacttggccgccaaaatttcagcatctgttagt---ttcttcttctctaactctaacatct 47836291  T
Q  609 ttaatgcctcctcatattgtctattgtacttttcgtaggttgaaga 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  47836290 ttaatgcctcctcatattgtctattgtacttttcgtaggttgaaga 47836245  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 468 - 636
Target Start/End: Original strand, 45393958 - 45394120
Alignment:
Q  468 aaatggacaccataaattgtttaagctcttcactactcatattgtcaattgaatcattccaccaatcacctttcttcaaaaacttggccgccaaaatttc 567  Q
    ||||||||||||||||||||| |||||  |||||||||||||  |||||||||||||||||||| ||||| || || |||| |||    |||||| |||     
T  45393958 aaatggacaccataaattgttcaagctgatcactactcatatcatcaattgaatcattccaccagtcacccttgttgaaaatctt---agccaaattttg 45394054  T
Q  568 agtatctgctagtttcttcttcttctctaactctaacatctttaatgcctcctcatattgtctattgta 636  Q
    |  |||| ||||||||||||| |||  |  ||| |||||||||  ||||||||||||||||||||||||    
T  45394055 aacatcttctagtttcttctt-ttccgt--ctccaacatcttttgtgcctcctcatattgtctattgta 45394120  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 11650798 - 11650840
Alignment:
Q  116 aaggctaacatcacttttagaagacaaacttcaaattttaact 158  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  11650798 aaggctaacatcacttttagaagtcaaactacaaattttaact 11650840  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 29779138 - 29779202
Alignment:
Q  173 aattctacaagcaaaatcaattttccttttaatcatcc-aacatgataaaatcaattcaacaatc 236  Q
    |||||||||||||||||||||| || ||| |||||||| ||||||||||||||||||| ||||||    
T  29779138 aattctacaagcaaaatcaattctcttttaaatcatccaaacatgataaaatcaattctacaatc 29779202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 547
Target Start/End: Original strand, 13539205 - 13539275
Alignment:
Q  477 ccataaattgtttaagctcttcactactcatattgtcaattgaatcattccaccaatcacctttcttcaaa 547  Q
    |||||||||||| |||||||||| |||||||||  ||||| ||||||||||||||||| | ||| ||||||    
T  13539205 ccataaattgttcaagctcttcaatactcatatcatcaatggaatcattccaccaatcgcttttgttcaaa 13539275  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 584 - 638
Target Start/End: Original strand, 13539294 - 13539348
Alignment:
Q  584 ttcttcttctctaactctaacatctttaatgcctcctcatattgtctattgtact 638  Q
    |||||||||||  |||| ||||| |||||||||||||||||| ||||||||||||    
T  13539294 ttcttcttctccgactccaacatttttaatgcctcctcatatcgtctattgtact 13539348  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 530
Target Start/End: Original strand, 52740534 - 52740601
Alignment:
Q  463 ctcaaaaatggacaccataaattgtttaagctcttcactactcatattgtcaattgaatcattccacc 530  Q
    |||| ||||||| | ||||||||||| ||| |  |||||||||||||  |||||||||||||||||||    
T  52740534 ctcataaatggatatcataaattgttcaagttgatcactactcatatcatcaattgaatcattccacc 52740601  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 17898212 - 17898274
Alignment:
Q  173 aattctacaagcaaaatcaattttccttttaatcatcc-aacatgataaaatcaattcaacaa 234  Q
    |||||||||||||||||||||| | |||| || ||||| ||||||||| ||||||||| ||||    
T  17898212 aattctacaagcaaaatcaattatactttaaaccatccaaacatgatacaatcaattctacaa 17898274  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 547
Target Start/End: Original strand, 9668181 - 9668251
Alignment:
Q  477 ccataaattgtttaagctcttcactactcatattgtcaattgaatcattccaccaatcacctttcttcaaa 547  Q
    |||||||||||| |||||||||| |||||||||  ||||| ||||||||||||||||| | ||| ||||||    
T  9668181 ccataaattgttcaagctcttcaatactcatatcatcaatggaatcattccaccaatcgcttttgttcaaa 9668251  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 584 - 638
Target Start/End: Original strand, 9668270 - 9668324
Alignment:
Q  584 ttcttcttctctaactctaacatctttaatgcctcctcatattgtctattgtact 638  Q
    |||||||||||  |||| ||||| |||||||||||||||||| ||||||||||||    
T  9668270 ttcttcttctccgactccaacatttttaatgcctcctcatatcgtctattgtact 9668324  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 1872308 - 1872365
Alignment:
Q  173 aattctacaagcaaaatcaattttccttttaatcatcc-aacatgataaaatcaattc 229  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||    
T  1872308 aattctacaagcaaaatcaattttcttttaaatcatccaaacatgataaaaacaattc 1872365  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 46870407 - 46870357
Alignment:
Q  185 aaaatcaattttccttttaatcatccaa-catgataaaatcaattcaacaa 234  Q
    |||||||||| |||||| |||||||||| ||||||||||||||||| ||||    
T  46870407 aaaatcaattatcctttaaatcatccaaacatgataaaatcaattctacaa 46870357  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 602 - 654
Target Start/End: Complemental strand, 35782264 - 35782212
Alignment:
Q  602 aacatctttaatgcctcctcatattgtctattgtacttttcgtaggttgaaga 654  Q
    |||| ||||| |||||||||||||||| ||||||||| || |||||| |||||    
T  35782264 aacacctttagtgcctcctcatattgtttattgtactctttgtaggtcgaaga 35782212  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 1879158 - 1879094
Alignment:
Q  173 aattctacaagcaaaatcaattttccttttaatcatccaa-catgataaaatcaattcaacaatc 236  Q
    ||||||||||| ||||| |||| || ||| | |||||||| ||||||||||||||||| ||||||    
T  1879158 aattctacaagtaaaataaattctcttttaactcatccaaacatgataaaatcaattctacaatc 1879094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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