View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3021_low_11 (Length: 568)
Name: NF3021_low_11
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_11 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 11 - 568
Target Start/End: Original strand, 31384579 - 31385137
Alignment:
| Q |
11 |
ggagcagagaacatatactattttctttcggatgaaatttcaaggaaatttaagctgtcgaattaaaagggaaattaagctatagaaagaaaaggaaatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31384579 |
ggagcagagaacatatactattttctttcggatgaaatttcaaggaaatttaagctgtcgaattaaaagggaaattaagctatagaaagaaaaggaaatt |
31384678 |
T |
|
| Q |
111 |
taggaggaaagcggaaattacccaaatagaattgctatatagtgcgaaaatttgtacgcgcgagtggtatacggtaaaggcagctagtgtt---atattt |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||||||||| |||||| |
|
|
| T |
31384679 |
taggaggaaagcggcaattacccaaatagaattgctatatagtgcgaaaatttgtacgcg--actggcacacggtaaaggcagctagtgttgttatattt |
31384776 |
T |
|
| Q |
208 |
ttcaaataaatgaaaatcaacgcaacttacaatctcaagcatatccaaaagctaacattaattcgttgcttttcgtccactagcatgtcgcaccaacaag |
307 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31384777 |
ttcaaataaatgaaagtcaacgcaacttacaatctcaagcatatccaaaagctaacattaattcgttgcttttcgtccactagcatgtcgcaccaacaag |
31384876 |
T |
|
| Q |
308 |
ctttttccttaccaaaatctttatggattagggatttagtatgagctaagacagttttaaaacttaataaaaggtagagtcatgctaacaagtgccctta |
407 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
31384877 |
ctttttccttacccaaatctttatgacttagggattaagtatgagctaagacagttttaaaacttaataaaaggtagagtcatgcttacaagttccctta |
31384976 |
T |
|
| Q |
408 |
ataaaattaaaaatgttgaatgcacaatttcttattattatactatatgtcttatgttattggattgacacttcaaatgattatgacaaattgttaaaat |
507 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31384977 |
ataaaactaaaaatgttgaatgcacaatttcttattattgtactatatgtcttacgttattggattgacacttcaaatgattatgacaaattgttaaaat |
31385076 |
T |
|
| Q |
508 |
aaaaaatgattacgacaaagaaactgatgatgagatatcttataccatatcaattgatgat |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
31385077 |
aaaaaatgattacgacaaagaaactgatgatgagttgtcttataccatatcaattgatgat |
31385137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 138 - 317
Target Start/End: Complemental strand, 26558567 - 26558386
Alignment:
| Q |
138 |
agaattgctatatagtgcgaaaatttgtacgcgcgagtggtatacggtaaaggcagctagtgttat---atttttcaaataaatgaaaatcaacgcaact |
234 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||||| ||| | ||| | ||| |||||||||||| ||||||||||||||||||| ||||| ||| | |
|
|
| T |
26558567 |
agaattgctatacagtgcgaaaatttgcaa-cgcgactggcacacgatgcaggtagctagtgttattatatttttcaaataaatgaaagtcaacacaatt |
26558469 |
T |
|
| Q |
235 |
tacaatctcaagcatatccaaaagctaacattaattcgttgcttttcgtccactagcatgtcgcaccaacaagctttttcctt |
317 |
Q |
| |
|
|||||||||||||||||| ||| ||| | |||| ||||||| ||||||| ||||| |||||||||||||||| |||||||||| |
|
|
| T |
26558468 |
tacaatctcaagcatatctaaaggctgatattatttcgttggttttcgtgcactaacatgtcgcaccaacaaactttttcctt |
26558386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 185 - 315
Target Start/End: Complemental strand, 23523185 - 23523052
Alignment:
| Q |
185 |
taaaggcagctagtgttat---atttttcaaataaatgaaaatcaacgcaacttacaatctcaagcatatccaaaagctaacattaattcgttgcttttc |
281 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||| ||||| | ||||||||||||| ||||||||| || || |||||||||||||| ||| |
|
|
| T |
23523185 |
taaaggcagctagtgttattatatttttctaataaatgaaagtcaacaaagcttacaatctcaattatatccaaaggccaatattaattcgttgctattc |
23523086 |
T |
|
| Q |
282 |
gtccactagcatgtcgcaccaacaagctttttcc |
315 |
Q |
| |
|
|| ||||| |||||| |||||||||||||||||| |
|
|
| T |
23523085 |
gtgcactaccatgtcacaccaacaagctttttcc |
23523052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 204 - 317
Target Start/End: Complemental strand, 45123657 - 45123544
Alignment:
| Q |
204 |
atttttcaaataaatgaaaatcaacgcaacttacaatctcaagcatatccaaaagctaacattaattcgttgcttttcgtccactagcatgtcgcaccaa |
303 |
Q |
| |
|
||||||| |||||||||| ||||| | |||||||||||||| ||||||||| || || |||||||||||||| || || ||||| ||||||||||||| |
|
|
| T |
45123657 |
atttttctaataaatgaatgtcaacaaagcttacaatctcaagtatatccaaaggccaatattaattcgttgctatttgtgcactaccatgtcgcaccaa |
45123558 |
T |
|
| Q |
304 |
caagctttttcctt |
317 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45123557 |
caagctttttcctt |
45123544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 138 - 317
Target Start/End: Original strand, 8041506 - 8041687
Alignment:
| Q |
138 |
agaattgctatatagtgcgaaaatttgtacgcgcgagtggtatacggtaaaggcagctagtgttat---atttttcaaataaatgaaaatcaacgcaact |
234 |
Q |
| |
|
|||||||||||| |||||||||| |||| | ||| ||| | ||| |||||| |||||||||||| || |||||||||||||||| ||||| | || |
|
|
| T |
8041506 |
agaattgctatacagtgcgaaaaactgtaacc-cgattggcacacgataaaggaagctagtgttattatatgtttcaaataaatgaaagtcaacaaagct |
8041604 |
T |
|
| Q |
235 |
tacaatctcaagcatatccaaaagctaacattaattcgttgcttttcgtccactagcatgtcgcaccaacaagctttttcctt |
317 |
Q |
| |
|
|| ||||||||| ||||| ||| | || |||||||||||||| ||| | ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
8041605 |
tataatctcaagtatatctaaagaccaatattaattcgttgctattcatgcactaacatgttgcaccaacaagctttttcctt |
8041687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 315
Target Start/End: Complemental strand, 48960204 - 48960123
Alignment:
| Q |
233 |
cttacaatctcaagcatatccaaaagctaacattaattcgttgcttttcgtccactagcatgtcgcaccaacaagctttttcc |
315 |
Q |
| |
|
||||||||||||| |||||||||| |||| ||| ||||| | ||||||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
48960204 |
cttacaatctcaaacatatccaaatactaatattt-ttcgtaggttttcgtgcactaacatgccgcaccaacaagctttttcc |
48960123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University