View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_low_14 (Length: 544)

Name: NF3021_low_14
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_low_14
NF3021_low_14
[»] chr1 (8 HSPs)
chr1 (18-533)||(51455327-51455841)
chr1 (415-529)||(30206808-30206922)
chr1 (415-526)||(51480424-51480535)
chr1 (445-529)||(51497310-51497394)
chr1 (143-232)||(51479949-51480038)
chr1 (127-234)||(30207301-30207408)
chr1 (149-233)||(51496994-51497078)
chr1 (258-376)||(51480269-51480387)
[»] chr5 (4 HSPs)
chr5 (27-533)||(43160261-43160774)
chr5 (450-533)||(27396465-27396548)
chr5 (447-526)||(20868672-20868751)
chr5 (133-222)||(27395958-27396047)
[»] scaffold0020 (1 HSPs)
scaffold0020 (448-526)||(137353-137431)
[»] chr6 (2 HSPs)
chr6 (445-526)||(18085553-18085634)
chr6 (143-226)||(18079591-18079673)


Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Original strand, 51455327 - 51455841
Alignment:
Q  18 ccttccacgattaactattcttctgatttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggctgaaaccatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51455327 ccttccacgattaactattcttctgatttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggctgaaaccatc 51455426  T
Q  118 aacgaggaggaggttgagttctctgagtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaag 217  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  51455427 aacgaggaggaggttgagttctctaagtatctgctgaaaggacttcttccacatttaagacggttggatgcagaacaaatgattgagaaggaaagagaag 51455526  T
Q  218 ccaagagacgaggtattcctgtatagtcggagaaaatttgtagtttcatatatttttcattttataatttgattttgggatgtgaattacagggctctca 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51455527 ccaagagacgaggtattcctgtatagtcggagaaaatttgtagttttatatatttttcattttataatttgattttgggatgtgaattacagggctctca 51455626  T
Q  318 ctctcaaagctaaatataaaaccggcggattattctaaagatgagcgtgtgttctggtaaggactgatttggtatattaatcaatgcnnnnnnnnactta 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||    
T  51455627 ctctcaaagctaaatataaaaccggcggattattctaaagatgagcgtgtgttctggtaaagactgatttggtatattaatcaatgc-tttttttactta 51455725  T
Q  418 ttctaatgctatatagctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttga 517  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51455726 ttctaatgctatatagttgttgacttcacactttttgtagtgacaactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttga 51455825  T
Q  518 cctttgtctcctctgt 533  Q
    ||||||||||||||||    
T  51455826 cctttgtctcctctgt 51455841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 415 - 529
Target Start/End: Complemental strand, 30206922 - 30206808
Alignment:
Q  415 ttattctaatgctatatagctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttt 514  Q
    |||| ||||| |||||||| |  |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  30206922 ttatactaattctatatagttaatgacttaacactttttgtagtgacaactgcaaaacgtcaatatttgactaccacagaagctgtacaaaatgctcttt 30206823  T
Q  515 tgacctttgtctcct 529  Q
    |||| ||||||||||    
T  30206822 tgacatttgtctcct 30206808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 415 - 526
Target Start/End: Original strand, 51480424 - 51480535
Alignment:
Q  415 ttattctaatgctatatagctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttt 514  Q
    ||||||| || |||||| |||  ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  51480424 ttattctgattctatattgctaatgatttaacactttttgtagtgacaactgcaaaacatcaatatttgactaccacagaagctgtacagaatgctcttt 51480523  T
Q  515 tgacctttgtct 526  Q
    | || |||||||    
T  51480524 taacatttgtct 51480535  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 445 - 529
Target Start/End: Original strand, 51497310 - 51497394
Alignment:
Q  445 acactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcct 529  Q
    ||||||| |||||||| | ||||||||| |||||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||    
T  51497310 acactttctgtagtgacatctgcaaaacctcaatattcgactaccacagaagctgtacaaaatgttcttttgacatttgtctcct 51497394  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 51479949 - 51480038
Alignment:
Q  143 agtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagacgaggta 232  Q
    ||||| || |||||| |||||||||| |||||||||| |||||||||||||||||| | |||||||| | |||||| ||||||| |||||    
T  51479949 agtatatggtgaaagaacttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggagatagaagcaaagagacaaggta 51480038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 30207408 - 30207301
Alignment:
Q  127 gaggttgagttctctgagtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagac 226  Q
    ||||||||| ||||  ||||| || |||||  |||||||||  |||||||||  ||||||||||||||||||   |||||||| | |||||| |||||||    
T  30207408 gaggttgagctctccaagtatatgttgaaaatacttcttccgtatttaagacaattggatgaagaacaaatggccgagaaggagatagaagcaaagagac 30207309  T
Q  227 gaggtatt 234  Q
     |||||||    
T  30207308 aaggtatt 30207301  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 51496994 - 51497078
Alignment:
Q  149 tgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagacgaggtat 233  Q
    ||||||||| |||| ||||| ||||||| || ||||||||||| ||||||  ||||||||| | |||||| |||| || ||||||    
T  51496994 tgctgaaagtactttttccatatttaagtcgtttggatgaagagcaaatggctgagaaggagatagaagcaaagatacaaggtat 51497078  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 376
Target Start/End: Original strand, 51480269 - 51480387
Alignment:
Q  258 tagtttcatatatttttcattttataatttgattttgggatgtgaattacagggctctcactctcaaagctaaatataaaaccggcggattattctaaag 357  Q
    |||||||||||||||| || ||||||||||| |||||||| |   ||| ||||||||||||  || ||||||||  |||||   || |||||  |||||     
T  51480269 tagtttcatatattttccaatttataatttgcttttgggacgaacattgcagggctctcacattctaagctaaaagtaaaagtcgcagattaccctaaaa 51480368  T
Q  358 atgagcgtgtgttctggta 376  Q
    || ||||||||| ||||||    
T  51480369 ataagcgtgtgtactggta 51480387  T

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Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 27 - 533
Target Start/End: Original strand, 43160261 - 43160774
Alignment:
Q  27 attaactattcttctgatttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggctgaaaccatcaacgaggag 126  Q
    ||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |||||  ||||||| || | | |||    
T  43160261 attaactattcttatgatttttctgtattgtatatttgaaatgtatccatctggtttactataggaaatgaagcataaggtcgaaaccaacagcaatgag 43160360  T
Q  127 gaggttgagttctctgagtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagac 226  Q
    || |||||||||||  || || | ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  43160361 gaagttgagttctcgaagaatattctgaaaggacttcttccacatttaagagggttggatgaagaacaaatgatttagaaggaaagagaagccaagatac 43160460  T
Q  227 gaggtattcctgtatagtcggagaaaatttgtagtttcatatatttttcattttataatttgattttgggatgtgaattacagg----gctctcactctc 322  Q
     |||||||||| ||||||| ||||  |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||    
T  43160461 aaggtattcctttatagtcagagatcatttttagttttatatatttttcattttataatttgattttgggatgtgaattacaggcctctctctcactctc 43160560  T
Q  323 aaagctaaatataaaaccggcggattattctaaagatgagcgtgtgttctggtaaggactgatttggtatattaatcaatgcnnnnnnnnacttattcta 422  Q
    || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||         ||||| ||||    
T  43160561 aatgctaaatataaaaccggcggattattctaaagatgcgcgtgtgttctggtaaggactgatttggtatattaatcaatg-ttttctttactta-tcta 43160658  T
Q  423 atgctatatag-----ctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttga 517  Q
    ||||| |||||      ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||  |||||||| ||||| |    
T  43160659 atgctttatagtgacaatgttggcttcacactttttatagtgacaactgcaaaacatcaatatttgactaccgcagaagctgcacaaaatgcccttttaa 43160758  T
Q  518 cctttgtctcctctgt 533  Q
    ||||||||||||||||    
T  43160759 cctttgtctcctctgt 43160774  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 27396465 - 27396548
Alignment:
Q  450 ttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt 533  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||||||  || |||| || |||||||||||||||||||||    
T  27396465 ttttgtagcgacaactgcaaaacatcaatatttgattaccacagaagctgcacagaatgttcctttgacctttgtctcctctgt 27396548  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 447 - 526
Target Start/End: Complemental strand, 20868751 - 20868672
Alignment:
Q  447 actttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct 526  Q
    |||||||||||||| |||||| | |  || ||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  20868751 actttttgtagtgacaactgccagagctcgatatttgactaccaccgaagttgtgcaaaatgctcttttgacctttgtct 20868672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 27395958 - 27396047
Alignment:
Q  133 gagttctctgagtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaag 222  Q
    ||||||||  ||||| |||| ||||  |||||||||||||||| ||| |||||| |||||||||||   |||||||| | ||||||||||    
T  27395958 gagttctccaagtatatgctcaaagctcttcttccacatttaatacgattggatcaagaacaaatggccgagaaggagatagaagccaag 27396047  T

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Target: scaffold0020 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 448 - 526
Target Start/End: Complemental strand, 137431 - 137353
Alignment:
Q  448 ctttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct 526  Q
    ||||||||||||| |||||| |||  | ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  137431 ctttttgtagtgacaactgccaaagcttaatatttgactaccacagaagctgtacaaaatgctcttttgacctttgtct 137353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 526
Target Start/End: Original strand, 18085553 - 18085634
Alignment:
Q  445 acactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct 526  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||  | ||||||||||| || |||||||    
T  18085553 acactttttgtagtgacaactgcaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtct 18085634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 18079591 - 18079673
Alignment:
Q  143 agtatctgctgaaaggacttcttccacatttaagacggttggatgaagaacaaatgattgagaaggaaagagaagccaagagac 226  Q
    ||||| ||||||||| |||||||||| |||||||||| |||||||||||||||||| | |||||||| | || ||| |||||||    
T  18079591 agtatatgctgaaag-acttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggatatagcagcaaagagac 18079673  T

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