View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_15 (Length: 538)
Name: NF3021_low_15
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 320 - 522
Target Start/End: Original strand, 37571632 - 37571835
Alignment:
| Q |
320 |
acggaggaggaggatgagttggagttggaggaacattgtggtgatgatgaattgt------tgttgttacggtggtgatgctgaaactccattttgttct |
413 |
Q |
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| T |
37571632 |
acggaggaggaggatgagttggagttggaggaacattgtggtgatgatgaattgttgttgttgttgttacggtggtgatgatgaaactccattttgttct |
37571731 |
T |
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| Q |
414 |
gatcaatcaatttctcctctccttcgatagagatacctactgctactagtattcaattcaattcaattcaatattctactggtccaaactcaaaactgtc |
513 |
Q |
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| T |
37571732 |
gatcaatcaatttctcctctccttcgatagagatacctactgctactagt-----attcaattcaattcaatattctactggtccaaactcaaaactgtc |
37571826 |
T |
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| Q |
514 |
actctatat |
522 |
Q |
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| T |
37571827 |
actctatat |
37571835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 37571314 - 37571380
Alignment:
| Q |
2 |
atgaaggagaggacaacgagacggaggtgaggatcggaggagaggaaagtgtcgtaaagccagtgac |
68 |
Q |
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| T |
37571314 |
atgaaggagaggacaacgagacggaggtgaggatcggaggagaggaaagtgtcgtaaagccagtgac |
37571380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 37571531 - 37571579
Alignment:
| Q |
219 |
ttcgggaacgggctttggaaactgattcccaccatgagtgcattggatc |
267 |
Q |
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| T |
37571531 |
ttcgggaacgggctttggaaactgattcccaccaagagtgcattggatc |
37571579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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