View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_19 (Length: 449)
Name: NF3021_low_19
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 435
Target Start/End: Complemental strand, 21940915 - 21940489
Alignment:
| Q |
9 |
aaatgaaggaagattgcctaaaagtccacaagaagatgccgagaaattttgaagtagcggcaaagaccaaattcgtgaagggatgtttcctcctaattgc |
108 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
21940915 |
aaatgaaggaagattgcctaaaagaccacaagaagatgctgagaaattttgaagttgcggcaaagaccaaatttgtgaagggatttttcctcctaattgc |
21940816 |
T |
|
| Q |
109 |
atattacaagagacattgaaatactccaattgagtagcttgagaaatatctaagggaatcccaccaacaaaattgttccatgacaaatcaacatatgtga |
208 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21940815 |
atattacaagacacattgaaatactccaattgagtagcttgagaaatatctaagggaataccaccaacaaaattgttccatgacaaatcaacatatgtga |
21940716 |
T |
|
| Q |
209 |
tatcaggaagatggttgaattttaaaggaatctctcctgagaatgaattatcttctaagcgaagacggacaagggaagaacaattcgagatcgaaaaaag |
308 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
21940715 |
tatcaggaagatggttgaagtttaaataaatctctcctgagaatgaattatcttctaagcgaagacggacaagggaagaacaatttgcaatcgaaaaaag |
21940616 |
T |
|
| Q |
309 |
actacctgtgaatttgtttgaaaacaggataagcttaaatagcactccactaagacaaacatctgacggtatgctaccactgaagttgtttgtggagaca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | ||||||||| ||| |||||||||||||||||||| |
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| T |
21940615 |
actacctgtgaatttgtttgaaaacaggataagcttaaatagtactccactaagacaaatatccggcggtatgctgccattgaagttgtttgtggagaca |
21940516 |
T |
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| Q |
409 |
tccacccacttgagtttggagtttttg |
435 |
Q |
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|| ||||| || ||||| ||||||||| |
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| T |
21940515 |
tctacccatttaagtttcgagtttttg |
21940489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 10801401 - 10801548
Alignment:
| Q |
9 |
aaatgaaggaagattgcctaaaagtccacaagaagatgccgagaaattttgaagtagcggcaaagaccaaattcgtgaagggatgtttcctcctaattgc |
108 |
Q |
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||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| | |||| |||||||||| |||||||||||||||||||||||||| |
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| T |
10801401 |
aaatgaaggaagattgcctaaaataccacaagaatatgctgagaaattttgaagttgtggcatagaccaaatttgtgaagggatgtttcctcctaattgc |
10801500 |
T |
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| Q |
109 |
atattacaagagacattgaaatactccaattgagtagcttgagaaata |
156 |
Q |
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|||||| |||||||| ||||||| ||| |||||||||||| ||||| |
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| T |
10801501 |
atattataagagacactgaaataactcaactgagtagcttgacaaata |
10801548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 435
Target Start/End: Original strand, 10801555 - 10801614
Alignment:
| Q |
376 |
ggtatgctaccactgaagttgtttgtggagacatccacccacttgagtttggagtttttg |
435 |
Q |
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|||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
10801555 |
ggtatgctgccattgaagttgtttacggagacatccaccgacttgagtttggagtttttg |
10801614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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