View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_low_2 (Length: 3164)

Name: NF3021_low_2
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_low_2
NF3021_low_2
[»] chr7 (4 HSPs)
chr7 (2794-3075)||(48569141-48569421)
chr7 (90-371)||(48569141-48569421)
chr7 (2663-2735)||(48569018-48569090)
chr7 (430-502)||(48569018-48569090)
[»] chr8 (10 HSPs)
chr8 (179-365)||(10821749-10821937)
chr8 (2800-2986)||(10821749-10821937)
chr8 (2800-2935)||(36145449-36145584)
chr8 (230-365)||(36145449-36145584)
chr8 (437-500)||(10822202-10822265)
chr8 (2665-2728)||(10822202-10822265)
chr8 (2665-2728)||(36145131-36145194)
chr8 (437-500)||(36145131-36145194)
chr8 (32-83)||(10821561-10821612)
chr8 (3082-3133)||(10821561-10821612)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-139; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 2794 - 3075
Target Start/End: Original strand, 48569141 - 48569421
Alignment:
Q  2794 gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttc 2893  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  48569141 gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctttttggttggaaatgctccaatggcccatatggttgttc 48569240  T
Q  2894 agcctaatgaagaccattcaggatcctcatcttttaaggtatattcatggaaaattatggtactttggtctactcttggaaggttgacatcttct-gaaa 2992  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48569241 agcctaatgaagaccattcaggatcctcatcttttaaggtatattcatagaaaattatggtactttggtctactcttggaaggttgacatcttctggaaa 48569340  T
Q  2993 taccttcaaggcatttcctttctttggttgtaccacagcctttccaatacttctgttttctgtgtgaaaattgattatgaatt 3075  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  48569341 taccttcaaggcatttcctttctttggttgtaccacagcctttccaatacttctgttttc--tgtgaaaattgattatgaatt 48569421  T

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Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 90 - 371
Target Start/End: Complemental strand, 48569421 - 48569141
Alignment:
Q  90 aattcataatcaattttcacacagaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttc-agaagatgtcaa 188  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48569421 aattcataatcaattttcaca--gaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttccagaagatgtcaa 48569324  T
Q  189 ccttccaagagtagaccaaagtaccataattttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc 288  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48569323 ccttccaagagtagaccaaagtaccataattttctatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc 48569224  T
Q  289 attggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc 371  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48569223 attggagcatttccaaccaaaaaggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc 48569141  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-30
Query Start/End: Original strand, 2663 - 2735
Target Start/End: Original strand, 48569018 - 48569090
Alignment:
Q  2663 aacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattcattgtgg 2735  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48569018 aacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtgaacattcattgtgg 48569090  T

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Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-30
Query Start/End: Original strand, 430 - 502
Target Start/End: Complemental strand, 48569090 - 48569018
Alignment:
Q  430 ccacaatgaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt 502  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48569090 ccacaatgaatgttcaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt 48569018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-33
Query Start/End: Original strand, 179 - 365
Target Start/End: Original strand, 10821749 - 10821937
Alignment:
Q  179 aagatgtcaaccttccaagagtagaccaaagtaccataa--ttttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaaca 276  Q
    |||||||||||||||||| ||||||   |||||||| ||  ||| |  | || |||||||||||||||  |||||||  || ||||| ||||||||||||    
T  10821749 aagatgtcaaccttccaatagtagattgaagtaccacaaaatttcctttaaacataccttaaaagatgttgatcctgtctgctcttctttaggctgaaca 10821848  T
Q  277 accatatgggccattggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaa 365  Q
    ||| |||||||||| ||||||||||| |||||||| ||||| || |||||||||| |||||||||||| ||||| || |||||||||||    
T  10821849 accgtatgggccatcggagcatttccgacaaaatatgtattcgaaagatctcctaagactgatttcaaggcagattctgcacactgcaa 10821937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-33
Query Start/End: Original strand, 2800 - 2986
Target Start/End: Complemental strand, 10821937 - 10821749
Alignment:
Q  2800 ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagccta 2899  Q
    ||||||||||| || ||||| |||||||||||| |||||||||| || ||||| |||||||| ||||||||||| |||||||||| ||||||||||||||    
T  10821937 ttgcagtgtgcagaatctgccttgaaatcagtcttaggagatctttcgaatacatattttgtcggaaatgctccgatggcccatacggttgttcagccta 10821838  T
Q  2900 atgaagaccattcaggatcctcatcttttaaggtatattcatggaaaa--ttatggtactttggtctactcttggaaggttgacatctt 2986  Q
    | ||||| ||  |||||||  ||||||||||||||| || |  | |||  || ||||||||   |||||| ||||||||||||||||||    
T  10821837 aagaagagcagacaggatcaacatcttttaaggtatgtttaaaggaaattttgtggtacttcaatctactattggaaggttgacatctt 10821749  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-29
Query Start/End: Original strand, 2800 - 2935
Target Start/End: Original strand, 36145449 - 36145584
Alignment:
Q  2800 ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagccta 2899  Q
    ||||||||||| || ||||| |||||||||||| | |||||||| || ||||| |||||||| ||||||||||| ||||||||||| |||||||||||||    
T  36145449 ttgcagtgtgcagaatctgccttgaaatcagtcttgggagatctttcaaatacatattttgtcggaaatgctccgatggcccatattgttgttcagccta 36145548  T
Q  2900 atgaagaccattcaggatcctcatcttttaaggtat 2935  Q
    | ||||| ||  |||||||  |||||||||||||||    
T  36145549 aagaagagcagacaggatcaacatcttttaaggtat 36145584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-29
Query Start/End: Original strand, 230 - 365
Target Start/End: Complemental strand, 36145584 - 36145449
Alignment:
Q  230 ataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggccattggagcatttccaacaaaataggtattggagagatctcc 329  Q
    |||||||||||||||  |||||||  || ||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| || ||||||||    
T  36145584 ataccttaaaagatgttgatcctgtctgctcttctttaggctgaacaacaatatgggccatcggagcatttccgacaaaatatgtatttgaaagatctcc 36145485  T
Q  330 tatgactgatttcaatgcagactcagcacactgcaa 365  Q
     | |||||||||||| ||||| || |||||||||||    
T  36145484 caagactgatttcaaggcagattctgcacactgcaa 36145449  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 10822202 - 10822265
Alignment:
Q  437 gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg 500  Q
    ||||||| ||||||||||| |||||||||||||||||   ||| ||||||||||||||||||||    
T  10822202 gaatgttcaccttacgcatagtttcctctgattcatatactttttctggaaaatgccacacagg 10822265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 2665 - 2728
Target Start/End: Complemental strand, 10822265 - 10822202
Alignment:
Q  2665 cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc 2728  Q
    |||||||||||||||||||| |||   ||||||||||||||||| ||||||||||| |||||||    
T  10822265 cctgtgtggcattttccagaaaaagtatatgaatcagaggaaactatgcgtaaggtgaacattc 10822202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 2665 - 2728
Target Start/End: Original strand, 36145131 - 36145194
Alignment:
Q  2665 cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc 2728  Q
    |||||||||||||||||||| |||   |||||||||||||| |||||||||||||| |||||||    
T  36145131 cctgtgtggcattttccagaaaaagtatatgaatcagaggataccatgcgtaaggtgaacattc 36145194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Complemental strand, 36145194 - 36145131
Alignment:
Q  437 gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg 500  Q
    ||||||| |||||||||||||| ||||||||||||||   ||| ||||||||||||||||||||    
T  36145194 gaatgttcaccttacgcatggtatcctctgattcatatactttttctggaaaatgccacacagg 36145131  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 10821561 - 10821612
Alignment:
Q  32 gaagaatttctatcggaagatttcagcaaaggaaaaaatgagcaagtataat 83  Q
    |||||||||||  | |||||||| ||||||||||| ||||||||||||||||    
T  10821561 gaagaatttctgacagaagatttaagcaaaggaaagaatgagcaagtataat 10821612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 3082 - 3133
Target Start/End: Complemental strand, 10821612 - 10821561
Alignment:
Q  3082 attatacttgctcattttttcctttgctgaaatcttccgatagaaattcttc 3133  Q
    |||||||||||||||| ||||||||||| |||||||| |  |||||||||||    
T  10821612 attatacttgctcattctttcctttgcttaaatcttctgtcagaaattcttc 10821561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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