View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_low_20 (Length: 439)

Name: NF3021_low_20
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_low_20
NF3021_low_20
[»] chr7 (5 HSPs)
chr7 (16-337)||(45446730-45447046)
chr7 (328-425)||(45446612-45446709)
chr7 (289-342)||(4997316-4997369)
chr7 (265-342)||(46088920-46088997)
chr7 (323-367)||(48901443-48901487)
[»] chr4 (15 HSPs)
chr4 (328-391)||(21538466-21538529)
chr4 (265-342)||(53777104-53777181)
chr4 (323-365)||(16473683-16473725)
chr4 (330-367)||(56565818-56565855)
chr4 (323-363)||(28235566-28235606)
chr4 (267-318)||(24076910-24076961)
chr4 (330-367)||(28234477-28234514)
chr4 (323-367)||(1736092-1736136)
chr4 (271-343)||(8866701-8866772)
chr4 (328-364)||(9655224-9655260)
chr4 (323-367)||(12376013-12376057)
chr4 (323-363)||(17342170-17342210)
chr4 (323-363)||(18884509-18884549)
chr4 (323-363)||(26791677-26791717)
chr4 (323-367)||(36480541-36480585)
[»] chr5 (5 HSPs)
chr5 (325-391)||(20421946-20422012)
chr5 (263-335)||(31239833-31239905)
chr5 (323-363)||(42912883-42912923)
chr5 (276-367)||(25983350-25983441)
chr5 (265-337)||(30966706-30966778)
[»] chr1 (9 HSPs)
chr1 (326-391)||(17514702-17514767)
chr1 (263-321)||(51320694-51320752)
chr1 (323-363)||(18609900-18609940)
chr1 (328-367)||(49502823-49502862)
chr1 (330-363)||(11828205-11828238)
chr1 (326-363)||(49502801-49502838)
chr1 (262-342)||(49857908-49857986)
chr1 (264-300)||(14771060-14771096)
chr1 (263-335)||(27115889-27115961)
[»] chr6 (8 HSPs)
chr6 (263-343)||(8193267-8193347)
chr6 (323-367)||(26350002-26350046)
chr6 (328-391)||(7911661-7911724)
chr6 (329-391)||(21600602-21600664)
chr6 (263-337)||(32643585-32643659)
chr6 (287-348)||(21600530-21600591)
chr6 (261-337)||(26855829-26855904)
chr6 (323-367)||(32395937-32395981)
[»] chr2 (9 HSPs)
chr2 (263-337)||(36255777-36255851)
chr2 (323-367)||(4015107-4015151)
chr2 (263-342)||(16211825-16211903)
chr2 (329-367)||(38340853-38340891)
chr2 (323-365)||(41273251-41273293)
chr2 (323-363)||(28419435-28419475)
chr2 (323-367)||(29600788-29600832)
chr2 (323-367)||(38779644-38779688)
chr2 (323-367)||(43618601-43618645)
[»] scaffold0425 (1 HSPs)
scaffold0425 (263-363)||(10646-10746)
[»] chr8 (6 HSPs)
chr8 (326-367)||(39582522-39582563)
chr8 (325-367)||(10749675-10749717)
chr8 (265-314)||(5304231-5304280)
chr8 (326-363)||(36313964-36314001)
chr8 (323-367)||(28646248-28646292)
chr8 (323-367)||(28650832-28650876)
[»] chr3 (10 HSPs)
chr3 (285-349)||(4177775-4177838)
chr3 (323-367)||(6144299-6144343)
chr3 (323-367)||(21343495-21343539)
chr3 (276-363)||(6525323-6525410)
chr3 (263-342)||(50122317-50122396)
chr3 (263-343)||(7988481-7988562)
chr3 (263-312)||(8397476-8397525)
chr3 (263-311)||(6524470-6524518)
chr3 (323-363)||(19341599-19341639)
chr3 (323-367)||(32744153-32744197)
[»] scaffold0181 (1 HSPs)
scaffold0181 (263-342)||(21026-21104)
[»] scaffold0417 (1 HSPs)
scaffold0417 (329-391)||(14582-14644)
[»] scaffold0388 (1 HSPs)
scaffold0388 (321-367)||(13910-13956)
[»] scaffold0153 (1 HSPs)
scaffold0153 (265-342)||(17422-17499)
[»] scaffold0258 (1 HSPs)
scaffold0258 (283-339)||(10365-10421)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 45447046 - 45446730
Alignment:
Q  16 attggaaccaattcatcaccaaagacaattggactaaattcttaagcctccgtttacatgcttgcgcacccgtttttaagattttggatgccttggtcga 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  45447046 attggaaccaattcatcaccaaagacaattggactaaattcttaagcctccgtttacatgcttgcgaacccgtttttcagattttggatgccttggtcga 45446947  T
Q  116 ccgtcctctttaccttgcctcatatacaaccatgcatgcttggtatgaatgcaatattacaactaagaacattagagttagcaattgtaattgacctatg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45446946 ccgtcctctttaccttgcctcatatacaaccatgcatgcttggtatgaatgcaatattacaactaagaacattagagttagcaattgtaattgacctatg 45446847  T
Q  216 ttttttggagtcttagtttggactctctttaaagactataataacaaaaaattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgta 315  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||     ||||||||||||||||||||||||||    
T  45446846 ttttttggagtcttagtttggactctctataaagactataataataaaaaattgttgttcacacatttt-----gttgaaaaacactagtaaaagacgta 45446752  T
Q  316 aataccacggcggcagttaact 337  Q
    ||||||||||||||||||||||    
T  45446751 aataccacggcggcagttaact 45446730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 328 - 425
Target Start/End: Complemental strand, 45446709 - 45446612
Alignment:
Q  328 gcagttaactaccgagaaaaacttctgcagttaactaccgtcggttccaccggcagttaactgcatagctgctcttccccaattgtaggtcaaatttg 425  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45446709 gcagttaactatcgagaaaaacttctgcagttaactaccgccggtttcatcggcagttaactgcatagctgctcttccccaattgtaggtcaaatttg 45446612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 4997316 - 4997369
Alignment:
Q  289 ggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaactaccga 342  Q
    |||||||||||||  |||||||||| ||||||| |  |||||||||||||||||    
T  4997316 ggttgaaaaacacatgtaaaagacgaaaatacccctacggcagttaactaccga 4997369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 46088920 - 46088997
Alignment:
Q  265 aattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaactaccga 342  Q
    |||||||||| |||||| ||| |||| ||| |||||||||||||||||  |||| || |  || ||||||||||||||    
T  46088920 aattgttgtttacacatgttataaggctgagaaacactagtaaaagacaaaaatgccccctcgccagttaactaccga 46088997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 48901487 - 48901443
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||| |||||||||||||||| |||||||| ||||| ||||||||    
T  48901487 cggctgcagttaactaccgaggaaaacttcggcagtaaactaccg 48901443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 391
Target Start/End: Complemental strand, 21538529 - 21538466
Alignment:
Q  328 gcagttaactaccgagaaaaacttctgcagttaactaccgtcggttccaccggcagttaactgc 391  Q
    |||||||||||| ||| |||||||| |||||||||||||  |||||||| ||||||||||||||    
T  21538529 gcagttaactactgaggaaaacttcagcagttaactaccaccggttccatcggcagttaactgc 21538466  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 342
Target Start/End: Original strand, 53777104 - 53777181
Alignment:
Q  265 aattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaactaccga 342  Q
    ||||| |||| |||||| ||| |||| ||| |||||||||||||||||| |||| || | ||||||||||||||||||    
T  53777104 aattgctgtttacacatgttataaggctgagaaacactagtaaaagacgaaaatgcccctgcggcagttaactaccga 53777181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 16473725 - 16473683
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactac 365  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  16473725 cggcggcagttaactaccgaggaaaacttctgcagtaaactac 16473683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 56565818 - 56565855
Alignment:
Q  330 agttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||||||||||||| |||||||||||||||||||||||    
T  56565818 agttaactaccgaggaaaacttctgcagttaactaccg 56565855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 28235606 - 28235566
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaact 363  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  28235606 cggcggcagttaactgccgaggaaaacttctgcagttaact 28235566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 24076961 - 24076910
Alignment:
Q  267 ttgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaat 318  Q
    ||||||||||||  | |||||||| |||||||||| ||||||||||||||||    
T  24076961 ttgttgttcacatttcttaaaagggtgaaaaacaccagtaaaagacgtaaat 24076910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 28234477 - 28234514
Alignment:
Q  330 agttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  28234477 agttaactgccgagaaaaacttctgcagtaaactaccg 28234514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 1736136 - 1736092
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||| |||||||||||||||| |||||||| ||||| ||||||||    
T  1736136 cggctgcagttaactaccgaggaaaacttcggcagtaaactaccg 1736092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 8866701 - 8866772
Alignment:
Q  271 tgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaactaccgag 343  Q
    ||||||||| | |||||||| |||||| |||  || ||||||||||||  | |||||||||||||||||||||    
T  8866701 tgttcacacttcttaaaaggctgaaaa-caccggttaaagacgtaaatgacccggcggcagttaactaccgag 8866772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 364
Target Start/End: Original strand, 9655224 - 9655260
Alignment:
Q  328 gcagttaactaccgagaaaaacttctgcagttaacta 364  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  9655224 gcagttaactaccgagaaaaacttcggcagtaaacta 9655260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 12376013 - 12376057
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||| |||||||||||||||| |||||||| ||||| ||||||||    
T  12376013 cggctgcagttaactaccgaggaaaacttcggcagtaaactaccg 12376057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 17342170 - 17342210
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaact 363  Q
    |||| ||||||||||||||||||||||||| | ||||||||    
T  17342170 cggctgcagttaactaccgagaaaaacttcggtagttaact 17342210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 18884549 - 18884509
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaact 363  Q
    |||| |||||||||| |||||||||||||| ||||||||||    
T  18884549 cggctgcagttaactgccgagaaaaacttcggcagttaact 18884509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 26791677 - 26791717
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaact 363  Q
    |||| |||||||||||||||||||||| || ||||||||||    
T  26791677 cggctgcagttaactaccgagaaaaacctcggcagttaact 26791717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 36480585 - 36480541
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||| |||||||||||||||| |||||||| | ||||||||||||    
T  36480585 cggctgcagttaactaccgaggaaaacttcggtagttaactaccg 36480541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 20421946 - 20422012
Alignment:
Q  325 gcggcagttaactaccgagaaaaacttctgcagttaactaccgtcggttccaccggcagttaactgc 391  Q
    ||||||||||||||||||| |||||||| ||||||||||| | ||| ||||| | ||||||||||||    
T  20421946 gcggcagttaactaccgaggaaaacttcggcagttaactatcatcgtttccatcagcagttaactgc 20422012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 335
Target Start/End: Complemental strand, 31239905 - 31239833
Alignment:
Q  263 aaaattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaa 335  Q
    ||||||||||||||||| | |||||||  |||||||||| ||||||| ||| |||||||  ||| ||||||||    
T  31239905 aaaattgttgttcacacttcttaaaagcatgaaaaacacaagtaaaatacgcaaataccctggcagcagttaa 31239833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 42912923 - 42912883
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaact 363  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  42912923 cggcggcagttaactaccgaggaaaacttcggcagttaact 42912883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 367
Target Start/End: Original strand, 25983350 - 25983441
Alignment:
Q  276 acacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||||||| | |||||||| |||||||||||||| ||   |||||| |  | |||||||||||||||| ||||| || | ||||||||||||    
T  25983350 acacatttgataaggttgagaaacactagtaaaataccacaataccccctctgcagttaactaccgaggaaaacatcggtagttaactaccg 25983441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 337
Target Start/End: Complemental strand, 30966778 - 30966706
Alignment:
Q  265 aattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaact 337  Q
    |||||||||  |||||| ||||| || ||| |||||||||||||||||  ||||||| |  ||||||||||||    
T  30966778 aattgttgtatacacatgttaaagggctgagaaacactagtaaaagaccaaaataccccttcggcagttaact 30966706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 17514767 - 17514702
Alignment:
Q  326 cggcagttaactaccgagaaaaacttctgcagttaactaccgtcggttccaccggcagttaactgc 391  Q
    |||||||||||||  ||| |||||||| |||||||||||| |||||||||| | ||||||||||||    
T  17514767 cggcagttaactattgaggaaaacttcggcagttaactactgtcggttccatctgcagttaactgc 17514702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 51320694 - 51320752
Alignment:
Q  263 aaaattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaatacc 321  Q
    ||||||||||||||||| ||||| |||| ||||| |||| ||||||| |||||||||||    
T  51320694 aaaattgttgttcacaccttttataaggctgaaacacacaagtaaaatacgtaaatacc 51320752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 18609940 - 18609900
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaact 363  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  18609940 cggcggcagttaactaccgaggaaaacttcggcagttaact 18609900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 367
Target Start/End: Complemental strand, 49502862 - 49502823
Alignment:
Q  328 gcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  49502862 gcagttaactaccgaggaaaacttcggcagttaactaccg 49502823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 363
Target Start/End: Complemental strand, 11828238 - 11828205
Alignment:
Q  330 agttaactaccgagaaaaacttctgcagttaact 363  Q
    ||||||||||||||||||||||| ||||||||||    
T  11828238 agttaactaccgagaaaaacttcggcagttaact 11828205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 49502838 - 49502801
Alignment:
Q  326 cggcagttaactaccgagaaaaacttctgcagttaact 363  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  49502838 cggcagttaactaccgaggaaaacttcagcagttaact 49502801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 342
Target Start/End: Complemental strand, 49857986 - 49857908
Alignment:
Q  262 aaaaattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaactaccga 342  Q
    ||||||||||||| |||||||||| |||||||  | |||| ||||||| |||||||| || |  |||||||||||| ||||    
T  49857986 aaaaattgttgttgacacattttataaggttg--agacacaagtaaaatacgtaaatgccccctcggcagttaactgccga 49857908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 300
Target Start/End: Original strand, 14771060 - 14771096
Alignment:
Q  264 aaattgttgttcacacattttaaaaggttgaaaaaca 300  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  14771060 aaattgttgttgacacattttaaaaggctgaaaaaca 14771096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 335
Target Start/End: Complemental strand, 27115961 - 27115889
Alignment:
Q  263 aaaattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaa 335  Q
    |||||||||||| |||||| | | |||| ||| |||||| ||||||||||||||||| |   |||||||||||    
T  27115961 aaaattgttgttgacacatatgagaaggctgagaaacaccagtaaaagacgtaaatatccatgcggcagttaa 27115889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 8193347 - 8193267
Alignment:
Q  263 aaaattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaactaccgag 343  Q
    |||||||||||| |||||| | | |||||||| |||||| |||||||||||||||| || | || |||||||||| |||||    
T  8193347 aaaattgttgttgacacatatgagaaggttgagaaacaccagtaaaagacgtaaatgcccctgcagcagttaactgccgag 8193267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 26350002 - 26350046
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    ||||||||||||||| ||||| |||||||||||||| ||||||||    
T  26350002 cggcggcagttaactgccgaggaaaacttctgcagtaaactaccg 26350046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 391
Target Start/End: Original strand, 7911661 - 7911724
Alignment:
Q  328 gcagttaactaccgagaaaaacttctgcagttaactaccgtcggttccaccggcagttaactgc 391  Q
    |||||||||||||||  |||||||| |||||| ||| |||||| ||||| || |||||||||||    
T  7911661 gcagttaactaccgaagaaaacttcggcagtttactgccgtcgattccatcgacagttaactgc 7911724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 391
Target Start/End: Original strand, 21600602 - 21600664
Alignment:
Q  329 cagttaactaccgagaaaaacttctgcagttaactaccgtcggttccaccggcagttaactgc 391  Q
    ||||||||||||||| ||| |||  | |||||||||||| |||||||| | ||||||||||||    
T  21600602 cagttaactaccgaggaaatctttgggagttaactaccgccggttccatctgcagttaactgc 21600664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 337
Target Start/End: Complemental strand, 32643659 - 32643585
Alignment:
Q  263 aaaattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaact 337  Q
    ||||||||||||||||||||| | |||||||||   ||| ||||||| |||||||| || |  ||||||||||||    
T  32643659 aaaattgttgttcacacatttcataaggttgaagcccacaagtaaaatacgtaaatgcctcctcggcagttaact 32643585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 21600530 - 21600591
Alignment:
Q  287 aaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaactaccgagaaaaa 348  Q
    |||| ||||||| ||||||||||||| ||| |||| || ||||||| |||||||||| ||||    
T  21600530 aaggctgaaaaatactagtaaaagacttaagtacctcgacggcagtaaactaccgaggaaaa 21600591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 337
Target Start/End: Original strand, 26855829 - 26855904
Alignment:
Q  261 aaaaaattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaact 337  Q
    ||||||||||||||  ||||||| | |||||||||||||||  |||||||| | |||  || |||||||||||||||    
T  26855829 aaaaaattgttgttggcacatttgagaaggttgaaaaacacatgtaaaagatg-aaaagccccggcggcagttaact 26855904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 32395937 - 32395981
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||||||| ||||||| |||| |||||||||||||| ||||||||    
T  32395937 cggcggcaattaactatcgaggaaaacttctgcagtaaactaccg 32395981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 337
Target Start/End: Complemental strand, 36255851 - 36255777
Alignment:
Q  263 aaaattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaact 337  Q
    |||||||||||| |||||| | | |||| ||| |||||| |||||||||||||||| || | |||||||||||||    
T  36255851 aaaattgttgttgacacatatgagaaggctgagaaacaccagtaaaagacgtaaattcccctgcggcagttaact 36255777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 4015151 - 4015107
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||| ||||||||||||||||||||||||| ||||| ||||||||    
T  4015151 cggctgcagttaactaccgagaaaaacttcggcagtaaactaccg 4015107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 342
Target Start/End: Complemental strand, 16211903 - 16211825
Alignment:
Q  263 aaaattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaactaccga 342  Q
    ||||||||||||||||| | ||||  || ||||||| || |||||||||||||||| |  | ||||||||||||||||||    
T  16211903 aaaattgttgttcacacttcttaac-ggctgaaaaataccagtaaaagacgtaaatgctccagcggcagttaactaccga 16211825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 38340891 - 38340853
Alignment:
Q  329 cagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  38340891 cagttaactaccgagaaaaacttcggcagtaaactaccg 38340853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 365
Target Start/End: Complemental strand, 41273293 - 41273251
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactac 365  Q
    ||||||||||||||| ||||| |||||||||||||| ||||||    
T  41273293 cggcggcagttaactgccgaggaaaacttctgcagtaaactac 41273251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 28419435 - 28419475
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaact 363  Q
    |||||| |||||||||||||| |||||||| ||||||||||    
T  28419435 cggcggtagttaactaccgaggaaaacttcggcagttaact 28419475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 29600788 - 29600832
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||| |||||||||||||||| |||||||| ||||| ||||||||    
T  29600788 cggctgcagttaactaccgaggaaaacttcggcagtaaactaccg 29600832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 38779688 - 38779644
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||| |||||||||| ||||| |||||||||||||| ||||||||    
T  38779688 cggctgcagttaactcccgaggaaaacttctgcagtaaactaccg 38779644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 43618601 - 43618645
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||| |||||||||||||||| ||||| || ||||||||||||||    
T  43618601 cggctgcagttaactaccgaggaaaacctcggcagttaactaccg 43618645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 363
Target Start/End: Original strand, 10646 - 10746
Alignment:
Q  263 aaaattgttgttcacacattttaaaaggt-tgaaaaacactagtaaaagacgtaaataccacggcggcagttaactaccgagaaaaacttctgcagttaa 361  Q
    |||||||||||  |||||| ||||||||  ||| |||||||||||||||||  ||||||| |  ||||||||||||  ||||  ||||||||||||||||    
T  10646 aaaattgttgtatacacatgttaaaaggactgagaaacactagtaaaagaccgaaataccccttcggcagttaactgtcgag-gaaacttctgcagttaa 10744  T
Q  362 ct 363  Q
    ||    
T  10745 ct 10746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 367
Target Start/End: Original strand, 39582522 - 39582563
Alignment:
Q  326 cggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  39582522 cggcagttaactatcgagaaaaacttcggcagttaactaccg 39582563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 367
Target Start/End: Complemental strand, 10749717 - 10749675
Alignment:
Q  325 gcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||    
T  10749717 gcggcagttaactgccgaggaaaacttctgcagtaaactaccg 10749675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 5304280 - 5304231
Alignment:
Q  265 aattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgt 314  Q
    ||||||||||||||||||| | |||| |||||||||| ||||||| ||||    
T  5304280 aattgttgttcacacatttgataaggctgaaaaacacgagtaaaatacgt 5304231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 36313964 - 36314001
Alignment:
Q  326 cggcagttaactaccgagaaaaacttctgcagttaact 363  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  36313964 cggcagttaactaccgagaaaaactttggcagttaact 36314001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 28646292 - 28646248
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||| |||||||||| ||||| |||||||| ||||||||||||||    
T  28646292 cggctgcagttaactgccgaggaaaacttcggcagttaactaccg 28646248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 28650876 - 28650832
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||| |||||||||| ||||| |||||||| ||||||||||||||    
T  28650876 cggctgcagttaactgccgaggaaaacttcggcagttaactaccg 28650832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 4177775 - 4177838
Alignment:
Q  285 aaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaactaccgagaaaaac 349  Q
    ||||||||||||| |||| |||||||||||||||||| || || ||||||| ||||||| |||||    
T  4177775 aaaaggttgaaaa-cactggtaaaagacgtaaataccccgtcgacagttaattaccgaggaaaac 4177838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 6144343 - 6144299
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||| |||||||||||||||| |||||||| ||||||||||||||    
T  6144343 cggctgcagttaactaccgaggaaaacttcggcagttaactaccg 6144299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 21343539 - 21343495
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||| |||||||||||||||| |||||||| ||||||||||||||    
T  21343539 cggctgcagttaactaccgaggaaaacttcggcagttaactaccg 21343495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 363
Target Start/End: Complemental strand, 6525410 - 6525323
Alignment:
Q  276 acacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaactaccgagaaaaacttctgcagttaact 363  Q
    |||||| ||||| || ||| |||||||||||||||||  ||||||| |   ||||| |||||| ||||||||||||  ||||||||||    
T  6525410 acacatgttaaagggctgagaaacactagtaaaagaccgaaatacccctttggcagctaactatcgagaaaaactttggcagttaact 6525323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 342
Target Start/End: Original strand, 50122317 - 50122396
Alignment:
Q  263 aaaattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaactaccga 342  Q
    ||||||| |||  |||||| ||| |||| |||||||||| ||||||||||| |||| |||| | | ||||||||||||||    
T  50122317 aaaattgctgtatacacatgttataaggctgaaaaacacaagtaaaagacgaaaatgccaccgtgacagttaactaccga 50122396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 7988562 - 7988481
Alignment:
Q  263 aaaattgttgttcacacattttaaaaggttgaaaaa-cactagtaaaagacgtaaataccacggcggcagttaactaccgag 343  Q
    ||||||||||||||||| | |||||||  ||||||| ||| ||||||||||||||||   ||  ||| ||||||||||||||    
T  7988562 aaaattgttgttcacacttcttaaaagactgaaaaaacaccagtaaaagacgtaaatgataccacggtagttaactaccgag 7988481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 8397476 - 8397525
Alignment:
Q  263 aaaattgttgttcacacattttaaaaggttgaaaaacactagtaaaagac 312  Q
    ||||||||||||||||| | |||||| | |||||||||| ||||||||||    
T  8397476 aaaattgttgttcacacttcttaaaaagctgaaaaacaccagtaaaagac 8397525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 6524470 - 6524518
Alignment:
Q  263 aaaattgttgttcacacattttaaaaggttgaaaaacactagtaaaaga 311  Q
    |||||||||||  |||||| ||||| | |||||||||||||||||||||    
T  6524470 aaaattgttgtatacacatattaaaggattgaaaaacactagtaaaaga 6524518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 19341639 - 19341599
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaact 363  Q
    |||| |||||||||||||||| |||||||| ||||||||||    
T  19341639 cggctgcagttaactaccgaggaaaacttcggcagttaact 19341599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 32744197 - 32744153
Alignment:
Q  323 cggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||| |||||||||||||||| |||||||| ||||| ||||||||    
T  32744197 cggctgcagttaactaccgaggaaaacttcggcagtaaactaccg 32744153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 342
Target Start/End: Original strand, 21026 - 21104
Alignment:
Q  263 aaaattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaactaccga 342  Q
    |||||||||||| |||||||| | |||| ||||||||||  ||||| |||| |||| || ||||||||||||||| ||||    
T  21026 aaaattgttgttgacacatttgagaaggctgaaaaacacatgtaaatgacg-aaatgccccggcggcagttaactgccga 21104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 391
Target Start/End: Original strand, 14582 - 14644
Alignment:
Q  329 cagttaactaccgagaaaaacttctgcagttaactaccgtcggttccaccggcagttaactgc 391  Q
    |||||||||  |||| |||||||| ||||||||||| ||||| ||||| || |||||||||||    
T  14582 cagttaactgtcgaggaaaacttcggcagttaactatcgtcgtttccatcgtcagttaactgc 14644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 367
Target Start/End: Complemental strand, 13956 - 13910
Alignment:
Q  321 cacggcggcagttaactaccgagaaaaacttctgcagttaactaccg 367  Q
    |||||| |||||||||| ||||||||||| || ||||||||||||||    
T  13956 cacggctgcagttaactgccgagaaaaacatcggcagttaactaccg 13910  T

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Target: scaffold0153 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 342
Target Start/End: Complemental strand, 17499 - 17422
Alignment:
Q  265 aattgttgttcacacattttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaactaccga 342  Q
    ||||| |||| |||||| ||| |||| ||| |||||||||||||||||| ||||  | |  |||||||||||||||||    
T  17499 aattgctgtttacacatgttataaggctgagaaacactagtaaaagacgaaaatgacccctcggcagttaactaccga 17422  T

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Target: scaffold0258 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 10421 - 10365
Alignment:
Q  283 ttaaaaggttgaaaaacactagtaaaagacgtaaataccacggcggcagttaactac 339  Q
    ||||||||||||||||||| | ||||| ||||||||||| |  | ||||||||||||    
T  10421 ttaaaaggttgaaaaacaccaataaaatacgtaaataccccctcagcagttaactac 10365  T

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