View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_21 (Length: 427)
Name: NF3021_low_21
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_21 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 15 - 427
Target Start/End: Complemental strand, 39083224 - 39082812
Alignment:
| Q |
15 |
gataccagtctagtagtagcattggtaaccctttttgcatctaagcactccagctcctgctgtcattgaagccacaagcataggtggtcgtgctgacatg |
114 |
Q |
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| T |
39083224 |
gataccaatctagtagtagcattggtaaccctttttgcatctaagcactccagctcctgctgtcattgaagccacaagcataggtggtcgtgctgacatg |
39083125 |
T |
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| Q |
115 |
cttgaggctttggcatatgtcgaagaagatgctcccgctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctccaattccagt |
214 |
Q |
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| T |
39083124 |
cttgaggctttggcatatgtcgaagaagatgctcccgctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctccaattccagt |
39083025 |
T |
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| Q |
215 |
tctcccactcaccctttgatgagtaaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacataaaatcaataagacatggtagac |
314 |
Q |
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| T |
39083024 |
tctcccactcaccctttgatgagtaaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacataaaatcaataagacatggtagac |
39082925 |
T |
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| Q |
315 |
tactagaatctaatagctttgcaccaacctacattcaatatttttcctctattacattttattttatgtatatcttacctctttgtggtcatcatcatct |
414 |
Q |
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| T |
39082924 |
tactagaatctaatagctttgcaccaacctacattcaatatttttcctccattacattttattttatgtatatcttacctctttgtggtcatcatcatct |
39082825 |
T |
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| Q |
415 |
ggagctagaaatc |
427 |
Q |
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| T |
39082824 |
ggagctagaaatc |
39082812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 23 - 298
Target Start/End: Complemental strand, 31728047 - 31727773
Alignment:
| Q |
23 |
tctagtagtagcattggtaaccctttttgcatctaagcactccagctcctgctgtcattgaagccacaagcataggtggtcgtgctgacatgcttgaggc |
122 |
Q |
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| T |
31728047 |
tctagtcgtagcattggtaaccctttttgcatctaagaactccagcaccagcagtcattgaagccacaagcataggtggtcgtgctgacatacttgaggc |
31727948 |
T |
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| Q |
123 |
tttggcatatgtcgaagaagatgctcccgctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctccaattccagttctcccac |
222 |
Q |
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| T |
31727947 |
tttggcatatgtcgaagaagatgctcccgctccagacggtgtgaaataggcaccattcaatattagatctccttcagatctcc-agtccagttctcccac |
31727849 |
T |
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| Q |
223 |
tcaccctttgatgagtaaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacataaaatca |
298 |
Q |
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| T |
31727848 |
tcaccttttgatgagtaaaaatgcttcgtgatctgataaataacccaatggttcattccaaaaacacaaaaaatca |
31727773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 289 - 379
Target Start/End: Complemental strand, 31727752 - 31727663
Alignment:
| Q |
289 |
cataaaatcaataagacatggtagactactagaatctaatagctttgcaccaacctacattcaatatttttcctctattacattttatttt |
379 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||||| |||||||||||| |||| |
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| T |
31727752 |
cataaaaccaataagacatggtagactactagaatctaatagctttgcactaaactatatt-aatatttttccactattacattttttttt |
31727663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 31727490 - 31727435
Alignment:
| Q |
370 |
attttattttatgtatatcttacctctttgtggtcatcatcatctggagctagaaatc |
427 |
Q |
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| T |
31727490 |
attttgttctatgtatctcttacctct--gtggtcatcatcatctggagctagaaatc |
31727435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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