View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_22 (Length: 423)
Name: NF3021_low_22
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 3196667 - 3196254
Alignment:
| Q |
1 |
cttcttgcactactaggtaagtaaatttagggtggctggcttctagggtgagcggttaaacaagtccctcgaccacatgggagaaaaatgacctacaaag |
100 |
Q |
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| T |
3196667 |
cttcttgcgctactaggtaagtaaatttagggtggctggcttctagggtgagcggttaaacaagtccctcgaccacatgggagaaaaatgacctacaaag |
3196568 |
T |
|
| Q |
101 |
ccaggtgaatgtttgttgagatacatatgtttgcttttcattgtttgtttcatttcttgcgctaggggtggaaatgcgatattaaaatgttataatagtg |
200 |
Q |
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| T |
3196567 |
ccaggtgaatgtttgttaagatacatatgtttgcttttcattgtttgtttcacttcttgcgctaggggtggaaatgtgatattaaaatgttataatagtg |
3196468 |
T |
|
| Q |
201 |
tttatataaatttcg-taaattgcaagagtccttaatataatgtgctgattacatgcgacaggagctgtttctttgtgttgctctaaggctagaatttgt |
299 |
Q |
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| T |
3196467 |
tttatataaatttcgttaaattgcaagagtccttaatataatgtgctgattacatgtgacaggaactgtttctttgtgttgctctaaggctagaatttgt |
3196368 |
T |
|
| Q |
300 |
caaaccagtggaaactggaaaccttagtcttcaagtatattaaacaatcgttacaaatttcgcatctcattttctcaaacaccttttatcaattcaatcc |
399 |
Q |
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| T |
3196367 |
caaaccagtggaaactggaaaccttagtcttcaagtatattaaacaattgttacaaatttcgcatctcattttcttaaacaccttttatcaattcaatcc |
3196268 |
T |
|
| Q |
400 |
tttgatgagaataa |
413 |
Q |
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|||||||||||||| |
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| T |
3196267 |
tttgatgagaataa |
3196254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 3196819 - 3196656
Alignment:
| Q |
1 |
cttcttgcactactaggtaagtaaatttagggtggctggcttctagggtgagcggttaaacaagtccctcgaccacatgggagaaaaatgacctacaaag |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3196819 |
cttcttgcgctactaggtaagtaaatttagggtggctggcttctagggtgagcggttaaacaagtccctcgaccacatgggagaaaaatgacctacaaag |
3196720 |
T |
|
| Q |
101 |
ccaggtgaatgtttgttgagatacatatgtttgcttttcattgtttgtttcatttcttgcgcta |
164 |
Q |
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| T |
3196719 |
ccaggtgaatgtttgttaagatacatatgtttgcttttcattgtttgtttcacttcttgcgcta |
3196656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 3196860 - 3196808
Alignment:
| Q |
112 |
tttgttgagatacatatgtttgcttttcattgtttgtttcatttcttgcgcta |
164 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3196860 |
tttgttaagatacatatgtttgcttttcattgtttgtttcacttcttgcgcta |
3196808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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