View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_low_24 (Length: 411)

Name: NF3021_low_24
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_low_24
NF3021_low_24
[»] chr6 (3 HSPs)
chr6 (1-393)||(10495186-10495572)
chr6 (48-93)||(13657730-13657775)
chr6 (65-93)||(13239670-13239698)
[»] chr1 (1 HSPs)
chr1 (6-95)||(12011037-12011127)
[»] chr7 (4 HSPs)
chr7 (6-93)||(8612670-8612757)
chr7 (6-81)||(11070016-11070091)
chr7 (6-80)||(7324303-7324377)
chr7 (48-89)||(26652035-26652076)
[»] chr3 (3 HSPs)
chr3 (8-93)||(25374327-25374412)
chr3 (6-79)||(10291097-10291170)
chr3 (52-93)||(11059391-11059432)
[»] chr2 (2 HSPs)
chr2 (48-87)||(29845276-29845315)
chr2 (48-80)||(20062058-20062090)
[»] chr8 (4 HSPs)
chr8 (55-95)||(13566980-13567021)
chr8 (48-93)||(19974476-19974521)
chr8 (48-93)||(21018312-21018357)
chr8 (44-89)||(27859639-27859684)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 10495572 - 10495186
Alignment:
Q  1 accgaaaacatcccaactaagttggtacccaaccacgactcctatcttctaccgcctactctatatatattattaaaaaagagaaaatatatacaggaga 100  Q
    |||||||||||| |||||| ||||  | | |||| ||||||||||| |||||||||||||| ||||||||      |||| |||||||||||| |||||     
T  10495572 accgaaaacatctcaactaggttgacatctaaccgcgactcctatcctctaccgcctactccatatatat------aaaatagaaaatatatataggagg 10495479  T
Q  101 accaggccaatatcctnnnnnnnncattcgctatgaccaaatatactgttcatttccagggaatcaatctatcaacgtatctcagttgatttctgacaaa 200  Q
    || ||||||||| | |        |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  10495478 actaggccaataccttaaaaaaaacattagctatgaccaaatatactgttcatttccagggaatcaatctatcaaagtatctcagttgatttctcacaaa 10495379  T
Q  201 ccaaatgacattaattatgtttacaagagcaaattgcatgacttttttgcattgagaaaaccaacctctatcagggagatgccaaatatcatctaatgag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10495378 ccaaatgacattaattatgtttacaagagcaaattgcatgactattttgcattgagaaaaccaacctctatcagggagaagccaaatatcatctaatgag 10495279  T
Q  301 ttttaaagaaatattgcatcttttagagtcaaggtttcataatttgagtgcttccatatcaatctgtcaccagtttattgaaaaggccagact 393  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10495278 ttttaaagacatattgcatcttttagagtcaaggtttcataatttgagtgcttccatatcaatctgtcaccagtttattgaaaaggcaagact 10495186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 13657775 - 13657730
Alignment:
Q  48 tctaccgcctactctatatatattattaaaaaagagaaaatatata 93  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||||    
T  13657775 tctagcgcctactcaatatatattattaaaaaagggaaaatatata 13657730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 13239698 - 13239670
Alignment:
Q  65 atatattattaaaaaagagaaaatatata 93  Q
    |||||||||||||||||||||||||||||    
T  13239698 atatattattaaaaaagagaaaatatata 13239670  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 12011127 - 12011037
Alignment:
Q  6 aaacatcccaactaagttggtacccaaccacgactcctatcttctaccgcctactctatatatattattaaaaaagag-aaaatatataca 95  Q
    |||||| ||||||| ||||| | ||||||  |||||| ||| |||||||||||||| ||||||||||||||||||| | ||||||||||||    
T  12011127 aaacatgccaactaggttggcatccaaccgggactcccatcctctaccgcctactccatatatattattaaaaaagggaaaaatatataca 12011037  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 8612670 - 8612757
Alignment:
Q  6 aaacatcccaactaagttggtacccaaccacgactcctatcttctaccgcctactctatatatattattaaaaaagagaaaatatata 93  Q
    |||||||||||||| ||||  ||||||||    |||||||| |||||||| ||||| ||||||||||||||||||| ||||| |||||    
T  8612670 aaacatcccaactaggttgacacccaaccgaagctcctatcctctaccgcttactccatatatattattaaaaaagggaaaaaatata 8612757  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 11070091 - 11070016
Alignment:
Q  6 aaacatcccaactaagttggtacccaaccacgactcctatcttctaccgcctactctatatatattattaaaaaag 81  Q
    |||||||||||||| ||||| | |||||    ||||  ||||||||||| |||||| |||||||||||||||||||    
T  11070091 aaacatcccaactaggttggcatccaactgaaactctcatcttctaccgtctactccatatatattattaaaaaag 11070016  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 7324377 - 7324303
Alignment:
Q  6 aaacatcccaactaagttggtacccaaccacgactcctatcttctaccgcctactctatatatattattaaaaaa 80  Q
    |||||||||||||| ||||| | ||||| |   |||| ||| |||||||||||||| ||||||||||||| ||||    
T  7324377 aaacatcccaactaggttggcatccaactagagctcccatcctctaccgcctactccatatatattattataaaa 7324303  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 26652076 - 26652035
Alignment:
Q  48 tctaccgcctactctatatatattattaaaaaagagaaaata 89  Q
    |||||| |||| |||||||||||||| |||||||||||||||    
T  26652076 tctaccacctattctatatatattatcaaaaaagagaaaata 26652035  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 25374327 - 25374412
Alignment:
Q  8 acatcccaactaagttggtacccaaccacgactcctatcttctaccgcctactctatatatattattaaaaaagagaaaatatata 93  Q
    ||||||||||||  |||| |||| |||| |||||| ||| | | ||||| |||| ||||||||||||||||||||  |||||||||    
T  25374327 acatcccaactagattggcaccccaccaggactccaatcctatgccgccaactccatatatattattaaaaaagaagaaatatata 25374412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 10291170 - 10291097
Alignment:
Q  6 aaacatcccaactaagttggtacccaaccacgactcctatcttctaccgcctactctatatatattattaaaaa 79  Q
    ||||||| |||||| ||||| ||||||||   ||||  ||| |||||| ||||||| |||||||||||||||||    
T  10291170 aaacatctcaactaggttggcacccaaccggaactctcatcctctaccacctactccatatatattattaaaaa 10291097  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 11059391 - 11059432
Alignment:
Q  52 ccgcctactctatatatattattaaaaaagagaaaatatata 93  Q
    |||||||||| |||||||||||||||||||  ||||||||||    
T  11059391 ccgcctactccatatatattattaaaaaaggaaaaatatata 11059432  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 29845315 - 29845276
Alignment:
Q  48 tctaccgcctactctatatatattattaaaaaagagaaaa 87  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  29845315 tctaccacctactcaatatatattattaaaaaagagaaaa 29845276  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 20062058 - 20062090
Alignment:
Q  48 tctaccgcctactctatatatattattaaaaaa 80  Q
    |||||||||||||| ||||||||||||||||||    
T  20062058 tctaccgcctactcaatatatattattaaaaaa 20062090  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 13566980 - 13567021
Alignment:
Q  55 cctactctatatatattattaaaaaagag-aaaatatataca 95  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  13566980 cctactctatatatattatttaaaaagagaaaaatatataca 13567021  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 19974476 - 19974521
Alignment:
Q  48 tctaccgcctactctatatatattattaaaaaagagaaaatatata 93  Q
    |||||| ||||||  |||||||||||||||||||| ||||||||||    
T  19974476 tctacctcctactacatatatattattaaaaaagaaaaaatatata 19974521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 21018357 - 21018312
Alignment:
Q  48 tctaccgcctactctatatatattattaaaaaagagaaaatatata 93  Q
    |||||| ||||||  |||||||||||||||||||| ||||||||||    
T  21018357 tctacctcctactacatatatattattaaaaaagaaaaaatatata 21018312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 27859639 - 27859684
Alignment:
Q  44 atcttctaccgcctactctatatatattattaaaaaagagaaaata 89  Q
    ||||||||||||||| || ||||||||||||||||||  |||||||    
T  27859639 atcttctaccgcctattccatatatattattaaaaaaaggaaaata 27859684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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