View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_29 (Length: 357)
Name: NF3021_low_29
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 43120813 - 43120471
Alignment:
| Q |
13 |
gagataataaacatcatttattgtctgaattaactataattaaac-----------caaagattttcagccacatttgcgaaggcagggaggagggacca |
101 |
Q |
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| T |
43120813 |
gagataataaacatcatttattgtctgaattaactataattaaacgcagccacaaccaaagattttcagccacatttgcgaaggcagggaggagggacca |
43120714 |
T |
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| Q |
102 |
aaagagaccctcatgttagctggttctatagcaaaaggttaacttccaaagaaatgttccttacatcgttcaggcaaagcattctgtcctacaccaaagg |
201 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43120713 |
aaagagaccctcatgttagctgtttctatagcaaaaggttaacttccaaagaaatgttccttacatcgttcaggcaaagcattatgtcctacaccaaagg |
43120614 |
T |
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| Q |
202 |
ggacagataaccttccttcttggcaaaaggttagagatttccaactagtaaagtacttattcgtctcttcgagc---tattaggtatcacatcacatata |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
43120613 |
ggacagataaccttccttcttggcaaaaggttagagatttccaactagt-aagtacttatccgtctcttcgagctattattaggtatcacatcacatata |
43120515 |
T |
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| Q |
299 |
tatgcctcaaattctctatctccaaccaagctcaagtagttgat |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43120514 |
tatgcctcaaattctctatctccaaccaagctcaagtagttgat |
43120471 |
T |
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