View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_3 (Length: 2942)
Name: NF3021_low_3
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 90 - 371
Target Start/End: Complemental strand, 48569421 - 48569141
Alignment:
| Q |
90 |
aattcataatcaattttcacacagaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttc-agaagatgtcaa |
188 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48569421 |
aattcataatcaattttcaca--gaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttccagaagatgtcaa |
48569324 |
T |
|
| Q |
189 |
ccttccaagagtagaccaaagtaccataattttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc |
288 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48569323 |
ccttccaagagtagaccaaagtaccataattttctatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc |
48569224 |
T |
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| Q |
289 |
attggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
371 |
Q |
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| T |
48569223 |
attggagcatttccaaccaaaaaggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
48569141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-30
Query Start/End: Original strand, 430 - 502
Target Start/End: Complemental strand, 48569090 - 48569018
Alignment:
| Q |
430 |
ccacaatgaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
502 |
Q |
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| T |
48569090 |
ccacaatgaatgttcaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
48569018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000005
Query Start/End: Original strand, 2267 - 2406
Target Start/End: Original strand, 15298577 - 15298716
Alignment:
| Q |
2267 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
2366 |
Q |
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| T |
15298577 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacataaccattatggagaaagtgagatgtatgctgaaaa |
15298676 |
T |
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| Q |
2367 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
2406 |
Q |
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||||||| ||||| ||| |||| ||||||||||| ||||| |
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| T |
15298677 |
tggctaagctgccaaagccattttggggtgaagctgttca |
15298716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 6e-33; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-33
Query Start/End: Original strand, 179 - 365
Target Start/End: Original strand, 10821749 - 10821937
Alignment:
| Q |
179 |
aagatgtcaaccttccaagagtagaccaaagtaccataa--ttttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaaca |
276 |
Q |
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|||||||||||||||||| |||||| |||||||| || ||| | | || ||||||||||||||| ||||||| || ||||| |||||||||||| |
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| T |
10821749 |
aagatgtcaaccttccaatagtagattgaagtaccacaaaatttcctttaaacataccttaaaagatgttgatcctgtctgctcttctttaggctgaaca |
10821848 |
T |
|
| Q |
277 |
accatatgggccattggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaa |
365 |
Q |
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||| |||||||||| ||||||||||| |||||||| ||||| || |||||||||| |||||||||||| ||||| || ||||||||||| |
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| T |
10821849 |
accgtatgggccatcggagcatttccgacaaaatatgtattcgaaagatctcctaagactgatttcaaggcagattctgcacactgcaa |
10821937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-29
Query Start/End: Original strand, 230 - 365
Target Start/End: Complemental strand, 36145584 - 36145449
Alignment:
| Q |
230 |
ataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggccattggagcatttccaacaaaataggtattggagagatctcc |
329 |
Q |
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|
||||||||||||||| ||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| || |||||||| |
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| T |
36145584 |
ataccttaaaagatgttgatcctgtctgctcttctttaggctgaacaacaatatgggccatcggagcatttccgacaaaatatgtatttgaaagatctcc |
36145485 |
T |
|
| Q |
330 |
tatgactgatttcaatgcagactcagcacactgcaa |
365 |
Q |
| |
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| |||||||||||| ||||| || ||||||||||| |
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| T |
36145484 |
caagactgatttcaaggcagattctgcacactgcaa |
36145449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 10822202 - 10822265
Alignment:
| Q |
437 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
500 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
10822202 |
gaatgttcaccttacgcatagtttcctctgattcatatactttttctggaaaatgccacacagg |
10822265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 2267 - 2406
Target Start/End: Original strand, 12932787 - 12932926
Alignment:
| Q |
2267 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
2366 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||| || ||||| ||||| || || || ||| | |||||| ||||||| |||||| | ||||| | || |
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| T |
12932787 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa |
12932886 |
T |
|
| Q |
2367 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
2406 |
Q |
| |
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||||||| ||||| ||| |||| |||| ||||| ||||| |
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| T |
12932887 |
tggctaagctgccaaagccattttgggtagaagctgttca |
12932926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.000000000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Complemental strand, 36145194 - 36145131
Alignment:
| Q |
437 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
500 |
Q |
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||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||| |
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| T |
36145194 |
gaatgttcaccttacgcatggtatcctctgattcatatactttttctggaaaatgccacacagg |
36145131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 10821561 - 10821612
Alignment:
| Q |
32 |
gaagaatttctatcggaagatttcagcaaaggaaaaaatgagcaagtataat |
83 |
Q |
| |
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||||||||||| | |||||||| ||||||||||| |||||||||||||||| |
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| T |
10821561 |
gaagaatttctgacagaagatttaagcaaaggaaagaatgagcaagtataat |
10821612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000005
Query Start/End: Original strand, 2267 - 2406
Target Start/End: Original strand, 14176057 - 14176196
Alignment:
| Q |
2267 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
2366 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||| || ||||| ||||| || || || ||| | |||||| ||||||| |||||| | ||||| | || |
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| T |
14176057 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa |
14176156 |
T |
|
| Q |
2367 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
2406 |
Q |
| |
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||||||| ||||| ||| |||| ||||| ||||| ||||| |
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| T |
14176157 |
tggctaagctgccaaagccattttggggagaagctgttca |
14176196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000005
Query Start/End: Original strand, 2267 - 2406
Target Start/End: Complemental strand, 28609820 - 28609681
Alignment:
| Q |
2267 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
2366 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||||| || ||||| ||||| || || || ||| | |||||| ||||||| |||||| | ||||| | || |
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|
| T |
28609820 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa |
28609721 |
T |
|
| Q |
2367 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
2406 |
Q |
| |
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||||||| ||||| ||| |||| ||||| ||||| ||||| |
|
|
| T |
28609720 |
tggctaagctgccaaagccattttggggagaagctgttca |
28609681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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