View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_30 (Length: 352)
Name: NF3021_low_30
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 44013231 - 44012911
Alignment:
| Q |
17 |
accatgttaaaagagagttttttacatacataatataaaatcatcaatacatttgtgnnnnnnn-ctcatttaaggaattaacgttctcttcttcaaaaa |
115 |
Q |
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| T |
44013231 |
accatgttaaaagggagttttttacatacataatataaaatcattaatacatttgtgaaaaaaaactcatttaagaaattaacgttctcttcttcaaaaa |
44013132 |
T |
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| Q |
116 |
gagaagaagaaagaaacaaatgttctctttaatagaatttaatctcatgaaagaannnnnnnngccataaacataatcaaaagtaacttactccgatccc |
215 |
Q |
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| T |
44013131 |
gagaagaagaaagaaacaaatgttctctttaatagaatttaatctcatgaaagaattttttttgccataaacataatcaaaagtaacttactccgaaccc |
44013032 |
T |
|
| Q |
216 |
ggttagtatgatattaagttccgttggtggtccacttgcaatccaaattgaagacatgctgtattggtttgctttaagtgatagattgtacgcagctatg |
315 |
Q |
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| T |
44013031 |
ggttagtatgatattaagttccgttggtggtccacttgcaatccaaattgaagacatgctgtattggtttgctttaagtgatagattgtacgcagctatg |
44012932 |
T |
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| Q |
316 |
atcgcatttgctccatgaaat |
336 |
Q |
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| T |
44012931 |
attgcatttgctccatgaaat |
44012911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 336
Target Start/End: Original strand, 20293597 - 20293687
Alignment:
| Q |
246 |
tccacttgcaatccaaattgaagacatgctgtattggtttgctttaagtgatagattgtacgcagctatgatcgcatttgctccatgaaat |
336 |
Q |
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| T |
20293597 |
tccactttcaatccaaatgtaagacatgctgtattgctttgcttgaactgatagattatacaaagctatgcccgcgtatgctccatgaaat |
20293687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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