View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_31 (Length: 345)
Name: NF3021_low_31
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 38881364 - 38881051
Alignment:
| Q |
16 |
atggaagatggtaagcaagttgccaacatcgcgaccgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaatgtgtaagaaacatgcctac |
115 |
Q |
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| T |
38881364 |
atggaagatggtaagcaagttgccaacatcgcgaccgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaacgtgtaagaaacatgcctac |
38881265 |
T |
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| Q |
116 |
acaaaaatatgatttgaattgtgcattttcttttagtttatgtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttg |
215 |
Q |
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| T |
38881264 |
acaaaaatatgatttgaattgtgcattttcttttagtttatgtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttg |
38881165 |
T |
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| Q |
216 |
agcacttacaagactcaatatctttgtcactgacaatatttacgatatgaatttttcaaaatagcgtttcttgattcctttatgaatttcagcttgtggc |
315 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38881164 |
agcacttacaagactcaatatctttgtcagtgacaatatttacgatatgaatttttcaaaatagcgtttcttgattcctttatgaatttcagctagtggc |
38881065 |
T |
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| Q |
316 |
attgagctcttctt |
329 |
Q |
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| T |
38881064 |
attgagctcttctt |
38881051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 14630989 - 14630860
Alignment:
| Q |
27 |
taagcaagttgccaacatcgcgaccgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaatgtgtaagaaacatgcctacacaaaaatatg |
126 |
Q |
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| T |
14630989 |
taagcaagaagccaacattccaaccgagagatggaaaatcaaagagaaccggaaaagggttgtgaagaaaatgtaagaaacatgactacacaaaaatatg |
14630890 |
T |
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| Q |
127 |
atttgaattgtgcattttcttttagtttat |
156 |
Q |
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| T |
14630889 |
atttgaattgcacattctcttttaatttat |
14630860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 14630823 - 14630748
Alignment:
| Q |
156 |
tgtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcacttacaagactc |
231 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| |||||||||| ||| |||| |
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| T |
14630823 |
tgtgtaacagattgtgttaagcataagttcaaatgttaaaatcttcttgttttctacttgagcacttgcaatactc |
14630748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 15621125 - 15621208
Alignment:
| Q |
157 |
gtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcacttacaagactcaatatcttt |
240 |
Q |
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| T |
15621125 |
gtgtaacaaaatgtgttaagcataagttcaaacgttaaaatctttttgttttctactcgagcatttacaattctcaatatcttt |
15621208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 15644894 - 15644977
Alignment:
| Q |
157 |
gtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcacttacaagactcaatatcttt |
240 |
Q |
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| T |
15644894 |
gtgtaacaaaatgtgttaagcataaattcaaacattaaaatctttttgttttctactcgagcatttacaattctcaatatcttt |
15644977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 16641417 - 16641374
Alignment:
| Q |
156 |
tgtgtaacagattgtgttaagcataagtccaaatgttgaaatct |
199 |
Q |
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| T |
16641417 |
tgtgtaacagattgtgttaagcataagttcaaatgttaaaatct |
16641374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 16641562 - 16641475
Alignment:
| Q |
49 |
accgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaatgtgtaagaaacatgcctacacaaaaatatgatttgaattg |
136 |
Q |
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|||||||||||||||| |||||| ||||||| || ||||| ||| ||||||||||||||||||| ||||||| ||||| ||||| |
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| T |
16641562 |
accgagagatggaaaatcaaagagaaccggaaaaagactgtgaagaaaatgtaagaaacatgcctacagaaaaatacgatttaaattg |
16641475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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