View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_low_36 (Length: 319)

Name: NF3021_low_36
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_low_36
NF3021_low_36
[»] chr6 (6 HSPs)
chr6 (81-308)||(32536648-32536876)
chr6 (191-309)||(15959084-15959202)
chr6 (219-303)||(14373289-14373373)
chr6 (264-303)||(11462171-11462210)
chr6 (219-303)||(20883331-20883415)
chr6 (219-251)||(21168035-21168067)
[»] chr3 (6 HSPs)
chr3 (191-309)||(26771259-26771377)
chr3 (208-257)||(17098163-17098212)
chr3 (264-303)||(19890436-19890475)
chr3 (219-298)||(48570337-48570416)
chr3 (219-288)||(40930826-40930895)
chr3 (219-251)||(34333113-34333145)
[»] chr2 (2 HSPs)
chr2 (191-309)||(17765232-17765350)
chr2 (208-303)||(15917411-15917507)
[»] chr8 (3 HSPs)
chr8 (200-295)||(34137242-34137337)
chr8 (225-286)||(41665673-41665734)
chr8 (219-251)||(32266374-32266406)
[»] chr4 (5 HSPs)
chr4 (219-303)||(2822335-2822419)
chr4 (206-292)||(11587483-11587569)
chr4 (219-303)||(20002476-20002560)
chr4 (221-303)||(23162932-23163014)
chr4 (219-251)||(15740031-15740063)
[»] chr5 (6 HSPs)
chr5 (219-286)||(19255421-19255488)
chr5 (219-303)||(18359388-18359472)
chr5 (222-300)||(26019287-26019365)
chr5 (219-251)||(8227836-8227868)
chr5 (219-251)||(23238193-23238225)
chr5 (275-303)||(27795241-27795269)
[»] chr7 (3 HSPs)
chr7 (264-303)||(25619217-25619256)
chr7 (219-254)||(37919351-37919386)
chr7 (219-251)||(11277550-11277582)
[»] chr1 (4 HSPs)
chr1 (219-286)||(6259592-6259659)
chr1 (213-303)||(47623367-47623456)
chr1 (226-254)||(4842211-4842239)
chr1 (219-303)||(51994026-51994110)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 81 - 308
Target Start/End: Complemental strand, 32536876 - 32536648
Alignment:
Q  81 aaatgaggggttgaagaacgaaaataatttacatgcatagatggtgtaaannnnnnnnnnn-acacatgtactatcaaatcacaatgcatagattggtga 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||    
T  32536876 aaatgaggggttgaagaacgaaaataatttacatgcatagatggtgtaatttttttttttttacacatgtactatcaaatcacaatgcatagattggtga 32536777  T
Q  180 gggcttggcttggggttcatcctcaacatatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccattt 279  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| |||||    
T  32536776 gggcttggcttggggttgatcctcaacatatttcggattattttttgcaatttattcattacgcaggttgtttaaaattgcaaagatctttttttcattt 32536677  T
Q  280 gatttggcttcagtgtgtttgggtcctat 308  Q
    |||||| ||||||||||||||||||||||    
T  32536676 gatttgacttcagtgtgtttgggtcctat 32536648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 15959084 - 15959202
Alignment:
Q  191 ggggttcatcctcaacatatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttc 290  Q
    |||||||||||||| |||||||| ||| |||||| ||||||| |||||||||||||||| ||||||| | |||||||||||||||||||||||||||||     
T  15959084 ggggttcatcctcagcatatttcagaccatttttcgcaatttgttcattacgcaggttgcttgaaatcgcgaagatcttttttccatttgatttggctta 15959183  T
Q  291 agtgtgtttgggtcctatg 309  Q
    |||||  ||||| ||||||    
T  15959184 agtgtaattgggacctatg 15959202  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 14373289 - 14373373
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 303  Q
    ||||||||||||||||||| || || ||| |||||||||   |  |||| || |||||||||||||||||||||||| |||||||    
T  14373289 attttttgcaatttattcagtatgctggtagtttgaaatcacgtcgatcattcttccatttgatttggcttcagtgtttttgggt 14373373  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 11462210 - 11462171
Alignment:
Q  264 gatcttttttccatttgatttggcttcagtgtgtttgggt 303  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  11462210 gatctttatttcatttgatttggcttcagtgtgtttgggt 11462171  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 20883331 - 20883415
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 303  Q
    ||||| ||||||||||| | || |||||| | |||||||   |  ||||||| || ||||||||||||||||||||||| |||||    
T  20883331 attttgtgcaatttattgaatatgcaggtggcttgaaatcccgtcgatctttatttcatttgatttggcttcagtgtgtatgggt 20883415  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 21168067 - 21168035
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtt 251  Q
    ||||||||||||||||| |||||||||||||||    
T  21168067 attttttgcaatttattaattacgcaggttgtt 21168035  T

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Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 26771259 - 26771377
Alignment:
Q  191 ggggttcatcctcaacatatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttc 290  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| || |||| | |||||| |||||||||||||||||||||||    
T  26771259 ggggttgatcctcagcatatttcggacaattttttgcaatttattcattacgcaggttgcttaaaatcgcgaagattttttttccatttgatttggcttc 26771358  T
Q  291 agtgtgtttgggtcctatg 309  Q
    |||||||||||||||||||    
T  26771359 agtgtgtttgggtcctatg 26771377  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 17098163 - 17098212
Alignment:
Q  208 tatttcggactattttttgcaatttattcattacgcaggttgtttgaaat 257  Q
    |||||| ||| |||| |||||||||||||||||||||||| |||||||||    
T  17098163 tatttcagaccatttcttgcaatttattcattacgcaggtggtttgaaat 17098212  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 19890475 - 19890436
Alignment:
Q  264 gatcttttttccatttgatttggcttcagtgtgtttgggt 303  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  19890475 gatctttatttcatttgatttggcttcagtgtgtttgggt 19890436  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 298
Target Start/End: Original strand, 48570337 - 48570416
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtt 298  Q
    ||||| ||||||||||||| || |||||| | ||||||| | |  ||||| | ||||| |||||||||||||||||||||    
T  48570337 attttatgcaatttattcaatatgcaggtggcttgaaatcgcgtcgatctctcttccacttgatttggcttcagtgtgtt 48570416  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 40930826 - 40930895
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggct 288  Q
    ||||||||||||||||| |||| |||||||||| || |  |||| | ||||| || ||||||||||||||    
T  40930826 attttttgcaatttattaattatgcaggttgttcgagagggtgacgttctttctttcatttgatttggct 40930895  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 34333113 - 34333145
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtt 251  Q
    ||||||||||||||||| |||||||||||||||    
T  34333113 attttttgcaatttattaattacgcaggttgtt 34333145  T

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Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 17765232 - 17765350
Alignment:
Q  191 ggggttcatcctcaacatatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttc 290  Q
    |||||| |||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||   ||||||||||||| ||||||||||||||||    
T  17765232 ggggttgatcctcaacatatttcagaccattttttgcaacttattcattacgcaggttgcttgaaatcacgaagatctttttttcatttgatttggcttc 17765331  T
Q  291 agtgtgtttgggtcctatg 309  Q
    |||||||||||||| ||||    
T  17765332 agtgtgtttgggtcttatg 17765350  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 303
Target Start/End: Complemental strand, 15917507 - 15917411
Alignment:
Q  208 tatttcggactattttttgcaatttattcattacgcaggttgtttg-aaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 303  Q
    |||||| ||| |||||||||||||||||||||| |||||| | | | |||| | || ||||||||||||| ||| |||| ||||| |||||||||||    
T  15917507 tatttcagaccattttttgcaatttattcattatgcaggtggctcgaaaatcgcgacgatcttttttccacttggtttgacttcaatgtgtttgggt 15917411  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 200 - 295
Target Start/End: Original strand, 34137242 - 34137337
Alignment:
Q  200 cctcaacatatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgt 295  Q
    ||||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||||   | |||| |||  |||||||||||||||||||||||    
T  34137242 cctcagcatattttggaccattttttgcaatttattcattatgcaggttgtttgaaatcccgtagatatttgctccatttgatttggcttcagtgt 34137337  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 41665673 - 41665734
Alignment:
Q  225 tgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttgg 286  Q
    ||||||||||| |||||||||||||||||| |  | || ||||||| ||||| |||||||||    
T  41665673 tgcaatttattaattacgcaggttgtttgagaaggcgacgatctttcttccacttgatttgg 41665734  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 32266406 - 32266374
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtt 251  Q
    ||||||||||||||||| |||||||||||||||    
T  32266406 attttttgcaatttattaattacgcaggttgtt 32266374  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 2822335 - 2822419
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 303  Q
    ||||| ||||||||||||| || |||||| | ||||||| | |  ||||||| ||||| ||||||||||||||||||||||||||    
T  2822335 attttatgcaatttattcaatatgcaggtggcttgaaatcgcgtcgatctttcttccacttgatttggcttcagtgtgtttgggt 2822419  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 292
Target Start/End: Original strand, 11587483 - 11587569
Alignment:
Q  206 catatttcggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcag 292  Q
    |||||||||||| ||||||||||||| |||||||| |||||| | | || ||   | |||||||| || ||||||||||||||||||    
T  11587483 catatttcggaccattttttgcaattcattcattatgcaggtagctcgacatcccgtagatctttatttcatttgatttggcttcag 11587569  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 20002560 - 20002476
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 303  Q
    ||||| ||||||||||| | || | |||| | ||||||||  |  ||||||| || |||||||||||||||||||||||||||||    
T  20002560 attttgtgcaatttattgaatatgtaggtggcttgaaattccgtcgatctttatttcatttgatttggcttcagtgtgtttgggt 20002476  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 303
Target Start/End: Original strand, 23162932 - 23163014
Alignment:
Q  221 tttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 303  Q
    |||||||||||||||||  | || ||| |||||||||   |  |||| || |||||||||||||||||||||||| |||||||    
T  23162932 tttttgcaatttattcagcatgctggtagtttgaaatcacgtcgatcgttcttccatttgatttggcttcagtgtatttgggt 23163014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 15740063 - 15740031
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtt 251  Q
    ||||||||||||||||| |||||||||||||||    
T  15740063 attttttgcaatttattaattacgcaggttgtt 15740031  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 19255421 - 19255488
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttgg 286  Q
    ||||||||||||||||| ||||||||||||||| || |||| || |||| |||||||| |||||||||    
T  19255421 attttttgcaatttattaattacgcaggttgttcgagattgcgacgatcatttttccacttgatttgg 19255488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 18359388 - 18359472
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 303  Q
    ||||| ||||||||||| | ||||||||| | |||||||   |  ||||||| || |||||||||||||||||||||||||||||    
T  18359388 attttgtgcaatttattaaatacgcaggtggcttgaaatctcgtcgatctttctttcatttgatttggcttcagtgtgtttgggt 18359472  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 26019287 - 26019365
Alignment:
Q  222 ttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttg 300  Q
    ||||||||||||| || |||||||||| | |||||  | |  ||||||| || ||||||||||||||||||||||||||    
T  26019287 ttttgcaatttatccaatacgcaggttttctgaaagcgcgtcgatctttatttcatttgatttggcttcagtgtgtttg 26019365  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 8227868 - 8227836
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtt 251  Q
    ||||||||||||||||| |||||||||||||||    
T  8227868 attttttgcaatttattaattacgcaggttgtt 8227836  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 23238225 - 23238193
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtt 251  Q
    ||||||||||||||||| |||||||||||||||    
T  23238225 attttttgcaatttattaattacgcaggttgtt 23238193  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 303
Target Start/End: Complemental strand, 27795269 - 27795241
Alignment:
Q  275 catttgatttggcttcagtgtgtttgggt 303  Q
    |||||||||||||||||||||||||||||    
T  27795269 catttgatttggcttcagtgtgtttgggt 27795241  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 303
Target Start/End: Complemental strand, 25619256 - 25619217
Alignment:
Q  264 gatcttttttccatttgatttggcttcagtgtgtttgggt 303  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  25619256 gatctttatttcatttgatttggcttcagtgtgtttgggt 25619217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 254
Target Start/End: Complemental strand, 37919386 - 37919351
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtttga 254  Q
    ||||||||||||||||| ||||||||||||||||||    
T  37919386 attttttgcaatttattaattacgcaggttgtttga 37919351  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 11277550 - 11277582
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtt 251  Q
    ||||||||||||||||| |||||||||||||||    
T  11277550 attttttgcaatttattaattacgcaggttgtt 11277582  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 6259659 - 6259592
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttgg 286  Q
    ||||||||||||||||| |||||| |||||||| || |  | || | |||||||||||||||||||||    
T  6259659 attttttgcaatttattaattacgtaggttgttcgagagggagacggtcttttttccatttgatttgg 6259592  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 47623367 - 47623456
Alignment:
Q  213 cggactattttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 303  Q
    ||||| ||||||||||||||||||| || || ||| |||||||||   |  |||| || ||||||||||||||||||| |||| |||||||    
T  47623367 cggaccattttttgcaatttattcagtatgctggtagtttgaaatcacgtcgatcgttcttccatttgatttggcttc-gtgtatttgggt 47623456  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 254
Target Start/End: Complemental strand, 4842239 - 4842211
Alignment:
Q  226 gcaatttattcattacgcaggttgtttga 254  Q
    |||||||||||||||||||||||||||||    
T  4842239 gcaatttattcattacgcaggttgtttga 4842211  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 51994026 - 51994110
Alignment:
Q  219 attttttgcaatttattcattacgcaggttgtttgaaattgtgaagatcttttttccatttgatttggcttcagtgtgtttgggt 303  Q
    ||||| ||||||||||||| || || |||   ||||||| | |  ||||| | ||||| ||||||||||||||||||||||||||    
T  51994026 attttatgcaatttattcaatatgctggtgccttgaaatcgcgtcgatctctcttccacttgatttggcttcagtgtgtttgggt 51994110  T

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