View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_low_39 (Length: 305)

Name: NF3021_low_39
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_low_39
NF3021_low_39
[»] chr2 (25 HSPs)
chr2 (16-254)||(43849927-43850165)
chr2 (131-303)||(9026779-9026952)
chr2 (132-254)||(32918074-32918196)
chr2 (131-252)||(30732001-30732122)
chr2 (137-254)||(2841008-2841125)
chr2 (131-302)||(8973305-8973477)
chr2 (135-254)||(30733985-30734104)
chr2 (135-303)||(9008018-9008187)
chr2 (131-301)||(9030391-9030557)
chr2 (131-250)||(9020840-9020960)
chr2 (140-254)||(19232391-19232504)
chr2 (131-212)||(9032046-9032127)
chr2 (131-218)||(9023440-9023527)
chr2 (131-205)||(8979315-8979389)
chr2 (130-225)||(8984685-8984780)
chr2 (135-279)||(9016490-9016638)
chr2 (135-251)||(8992145-8992262)
chr2 (145-245)||(10763878-10763978)
chr2 (142-254)||(35701893-35702005)
chr2 (131-250)||(8988448-8988568)
chr2 (140-281)||(6471674-6471813)
chr2 (166-254)||(17225654-17225743)
chr2 (169-254)||(17275862-17275947)
chr2 (194-254)||(8912990-8913052)
chr2 (141-176)||(39814115-39814150)
[»] chr8 (14 HSPs)
chr8 (34-254)||(40054205-40054428)
chr8 (132-302)||(44878977-44879147)
chr8 (132-302)||(44880774-44880944)
chr8 (131-301)||(41841096-41841266)
chr8 (135-254)||(10944390-10944509)
chr8 (138-237)||(37682057-37682156)
chr8 (140-254)||(37679757-37679871)
chr8 (155-302)||(44582870-44583017)
chr8 (131-238)||(42555090-42555197)
chr8 (131-212)||(42220879-42220959)
chr8 (131-181)||(42872514-42872564)
chr8 (135-211)||(42092018-42092093)
chr8 (204-249)||(33577710-33577755)
chr8 (198-254)||(42554653-42554709)
[»] chr1 (21 HSPs)
chr1 (62-254)||(38175521-38175713)
chr1 (131-303)||(33988063-33988235)
chr1 (130-254)||(14683742-14683866)
chr1 (131-254)||(14654331-14654454)
chr1 (131-254)||(14664122-14664245)
chr1 (131-254)||(14669700-14669823)
chr1 (131-254)||(14706081-14706204)
chr1 (131-254)||(14708571-14708694)
chr1 (106-254)||(28366189-28366338)
chr1 (131-254)||(14681592-14681715)
chr1 (131-254)||(14716284-14716407)
chr1 (134-254)||(14674477-14674597)
chr1 (134-254)||(14679855-14679975)
chr1 (138-254)||(14652525-14652641)
chr1 (138-254)||(14662316-14662432)
chr1 (130-233)||(14676624-14676727)
chr1 (135-254)||(14667102-14667221)
chr1 (141-245)||(11872481-11872585)
chr1 (144-216)||(37422175-37422247)
chr1 (134-210)||(28698549-28698625)
chr1 (194-280)||(7448392-7448478)
[»] chr5 (7 HSPs)
chr5 (138-293)||(3643640-3643795)
chr5 (62-254)||(7524893-7525084)
chr5 (135-254)||(1716442-1716562)
chr5 (142-250)||(4103249-4103357)
chr5 (140-301)||(16037861-16038020)
chr5 (171-251)||(5350672-5350752)
chr5 (145-209)||(19261152-19261216)
[»] chr4 (16 HSPs)
chr4 (62-279)||(49108599-49108816)
chr4 (62-254)||(49106520-49106712)
chr4 (105-301)||(11652336-11652532)
chr4 (131-302)||(3461085-3461256)
chr4 (131-254)||(50077190-50077313)
chr4 (166-302)||(21503706-21503842)
chr4 (139-250)||(26998735-26998846)
chr4 (139-244)||(26984668-26984773)
chr4 (139-250)||(48205832-48205943)
chr4 (62-238)||(49533638-49533807)
chr4 (140-243)||(41013548-41013651)
chr4 (174-247)||(35806165-35806238)
chr4 (145-245)||(26982549-26982646)
chr4 (145-198)||(6431957-6432010)
chr4 (192-245)||(54677580-54677633)
chr4 (143-179)||(34481155-34481191)
[»] chr6 (7 HSPs)
chr6 (62-254)||(10795881-10796072)
chr6 (62-254)||(10791643-10791834)
chr6 (138-254)||(30521242-30521358)
chr6 (140-250)||(8875691-8875803)
chr6 (181-254)||(11333273-11333346)
chr6 (145-244)||(21216032-21216131)
chr6 (194-254)||(13136610-13136670)
[»] chr7 (2 HSPs)
chr7 (138-254)||(27134511-27134627)
chr7 (144-254)||(8128149-8128258)
[»] chr3 (1 HSPs)
chr3 (140-186)||(15758562-15758608)
[»] scaffold0549 (1 HSPs)
scaffold0549 (189-298)||(5447-5556)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 43849927 - 43850165
Alignment:
Q  16 cagatatatgggagcagtgtgtaagagtccctaggtgctactgcatagtcccacatcaggtaatcaagaaaggatctgagtagacagaggatataaaacc 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  43849927 cagatatatgggagcagtgtgtaagagtcccaaggtgctactgcatagtcccacatcgggtaatcaagaaaggatctgagtagacagaggatataaaagc 43850026  T
Q  116 agatgcgaagcctcatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggccca 215  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43850027 agatgcgtagccttatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggccca 43850126  T
Q  216 atgagtcacacgatattaaattacttttttgagggggag 254  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  43850127 atgagtcacatgatattaaatcacttttttgagggggag 43850165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 131 - 303
Target Start/End: Original strand, 9026779 - 9026952
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcac-acgat 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||| ||||| ||  |    
T  9026779 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcacaacagt 9026878  T
Q  230 attaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgct 303  Q
    ||||||||||||||||||| |||||  |  ||  |||||||||||||||| ||||||| |||||||||||||||    
T  9026879 attaaattacttttttgagtgggagagaccatttcaatagcttgctattgggtttctcaagtgtcgcctatgct 9026952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 132 - 254
Target Start/End: Original strand, 32918074 - 32918196
Alignment:
Q  132 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatat 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   ||||||||||    
T  32918074 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatat 32918173  T
Q  232 taaattacttttttgagggggag 254  Q
    |||||||||||||||||||||||    
T  32918174 taaattacttttttgagggggag 32918196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 131 - 252
Target Start/End: Original strand, 30732001 - 30732122
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||  ||||||||||    
T  30732001 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgata 30732100  T
Q  231 ttaaattacttttttgaggggg 252  Q
    ||||||||||||||||||||||    
T  30732101 ttaaattacttttttgaggggg 30732122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 137 - 254
Target Start/End: Complemental strand, 2841125 - 2841008
Alignment:
Q  137 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaat 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||  ||||||||||||||||    
T  2841125 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcacacgatattaaat 2841026  T
Q  237 tacttttttgagggggag 254  Q
    ||||||||||||||||||    
T  2841025 tacttttttgagggggag 2841008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 131 - 302
Target Start/End: Original strand, 8973305 - 8973477
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcac-acgat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||  ||||||||||| ||||| || ||    
T  8973305 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgggtcacaacaat 8973404  T
Q  230 attaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgc 302  Q
    |||||||||||||||| ||||||||  |  ||  |||||||||||| ||| ||||||| ||||| || |||||    
T  8973405 attaaattacttttttaagggggagagaccatttcaatagcttgctgttgggtttctcaagtgttgcatatgc 8973477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 30733985 - 30734104
Alignment:
Q  135 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaa 234  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||| ||||||||    
T  30733985 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaa 30734084  T
Q  235 attacttttttgagggggag 254  Q
    ||||||||||| ||||||||    
T  30734085 attactttttttagggggag 30734104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 135 - 303
Target Start/End: Original strand, 9008018 - 9008187
Alignment:
Q  135 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtca-cacgatatta 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||| ||||  ||  |||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcataacagtatta 9008117  T
Q  234 aattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgct 303  Q
    |||||||||||||||||||||     ||  ||||| |||| ||||| ||||||| |||||||||||||||    
T  9008118 aattacttttttgagggggagaggccatttcaataacttgttattgggtttctcaagtgtcgcctatgct 9008187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 131 - 301
Target Start/End: Original strand, 9030391 - 9030557
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 230  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||| | ||||| ||||| |||||||  ||    
T  9030391 tttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatttgagaagtggctcaatgggtcacacagta 9030490  T
Q  231 ttaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatg 301  Q
    ||||||||||||||||||||||||   ||    |||||||||||||||| | ||||| |||||||||||||    
T  9030491 ttaaattacttttttgagggggagaggtt----caatagcttgctattgggcttctcaagtgtcgcctatg 9030557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 9020840 - 9020960
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcac-acgat 229  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| ||||| ||  |    
T  9020840 tttcaattcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgggtcactacagt 9020939  T
Q  230 attaaattacttttttgaggg 250  Q
    |||||||||||||||||||||    
T  9020940 attaaattacttttttgaggg 9020960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 19232504 - 19232391
Alignment:
Q  140 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattac 239  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||| |||| || ||||||| ||||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatattaaattac 19232406  T
Q  240 ttttttgagggggag 254  Q
     ||||||||||||||    
T  19232405 ctttttgagggggag 19232391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 9032046 - 9032127
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggc 212  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9032046 tttcaactcatacctttctcggccttttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggc 9032127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 9023440 - 9023527
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||  |||||||||||    
T  9023440 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatg 9023527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 8979315 - 8979389
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  8979315 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 130 - 225
Target Start/End: Original strand, 8984685 - 8984780
Alignment:
Q  130 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcaca 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| ||||  |||||| |||| ||||||    
T  8984685 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgattagtggcctaatgggtcaca 8984780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 135 - 279
Target Start/End: Original strand, 9016490 - 9016638
Alignment:
Q  135 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatc---aggttaatatctgatatgtggcccaatgagtcac-acgata 230  Q
    ||||||||||||  ||| |||||||||||||||||| |||||||||||||||||||   || ||||||||||||  ||||||||||| ||||| ||  ||    
T  9016490 aactcataccttattcgaccttttggctaagatcaaatgtagtatctgttcttatcagtagtttaatatctgattagtggcccaatgggtcacaacagta 9016589  T
Q  231 ttaaattacttttttgagggggagtaattatcacaatagcttgctattg 279  Q
    ||||||||||||||||||||||||  |  ||  ||||||||||||||||    
T  9016590 ttaaattacttttttgagggggagagacaatttcaatagcttgctattg 9016638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 135 - 251
Target Start/End: Original strand, 8992145 - 8992262
Alignment:
Q  135 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcac-acgatatta 233  Q
    ||||||| |||||||| | |||||||||||||||||||||||||| ||||||||| || | ||||||||||  ||||||||||| ||||| |  ||||||    
T  8992145 aactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgattagtggcccaatgggtcacaataatatta 8992244  T
Q  234 aattacttttttgagggg 251  Q
    ||||||||||||||||||    
T  8992245 aattacttttttgagggg 8992262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 10763978 - 10763878
Alignment:
Q  145 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttt 244  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||  |||||   || || |||||||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtccatacaatattaaattacttttt 10763879  T
Q  245 t 245  Q
    |    
T  10763878 t 10763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 35701893 - 35702005
Alignment:
Q  142 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattactt 241  Q
    |||||||||  | |||||||||||||||||||| |||| |||| |||| || ||||||| |||||||||| ||||  |||||||||||||||  ||||||    
T  35701893 acctttctcaactttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgatatgtgggccaacaagtcacacgatattagtttactt 35701992  T
Q  242 ttttgagggggag 254  Q
    |||||||||||||    
T  35701993 ttttgagggggag 35702005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 8988448 - 8988568
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcac-acgat 229  Q
    |||||||| ||||| |||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||  ||| | |||||  || | || ||    
T  8988448 tttcaacttataccattcttggccttttggcgaagatcaagtgtagtatttgttcttatcagtttaatatttgatcagtgactcaatggttctcaacaat 8988547  T
Q  230 attaaattacttttttgaggg 250  Q
    |||||||||||||||||||||    
T  8988548 attaaattacttttttgaggg 8988568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 281
Target Start/End: Complemental strand, 6471813 - 6471674
Alignment:
Q  140 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattac 239  Q
    |||||||| ||| ||||||||||||||| ||||||||||| ||||||||| || ||||||||||||||  || | ||||  ||||| |||||||| ||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgatatacggtctaatggatcacatgatattaagttac 6471715  T
Q  240 ttttttgagggggagtaattatcacaatagcttgctattgag 281  Q
    |||||| ||||| || | | |||| ||||| |||||||||||    
T  6471714 tttttt-aggggaagaagtcatcataatagtttgctattgag 6471674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 17225743 - 17225654
Alignment:
Q  166 atcaagtgtagtatctgttctt-atcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 254  Q
    ||||||||||||||||||| || ||| | |||||| ||||||| ||| ||||||| ||| ||||||||||||||||||||||||| ||||    
T  17225743 atcaagtgtagtatctgttttttatcggtttaataactgatatctggtccaatgaatcatacgatattaaattacttttttgaggaggag 17225654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 17275862 - 17275947
Alignment:
Q  169 aagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 254  Q
    |||||||||||  ||||||||||| | ||| | | |||||||| ||||||  |||||||||||| |||||| ||||||||||||||    
T  17275862 aagtgtagtatacgttcttatcagttcaatctttaatatgtggtccaatggatcacacgatattgaattacatttttgagggggag 17275947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 8912990 - 8913052
Alignment:
Q  194 ttaatatctgatatgtggcccaatgagtcacac--gatattaaattacttttttgagggggag 254  Q
    ||||||| | |||||||| ||||||| ||||||  ||||||||||||||||||||||||||||    
T  8912990 ttaatatataatatgtggtccaatgaatcacacatgatattaaattacttttttgagggggag 8913052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 176
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  141 tacctttctcggccttttggctaagatcaagtgtag 176  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 34 - 254
Target Start/End: Original strand, 40054205 - 40054428
Alignment:
Q  34 gtgtaagagtccctaggtgctactgcata---gtcccacatcaggtaatcaagaaaggatctgagtagacagaggatataaaaccagatgcgaagcctca 130  Q
    |||||| |||||| |||| ||||||||||   ||||||||||   |||| ||||||||| |||||||||||  ||||||||||  |||||||| ||||||    
T  40054205 gtgtaatagtcccaaggtactactgcataaaagtcccacatcgaataatgaagaaaggaactgagtagacactggatataaaagaagatgcgaggcctca 40054304  T
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 230  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||    
T  40054305 ttttaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgata 40054404  T
Q  231 ttaaattacttttttgagggggag 254  Q
    ||||||||||||||||||||||||    
T  40054405 ttaaattacttttttgagggggag 40054428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 132 - 302
Target Start/End: Original strand, 44878977 - 44879147
Alignment:
Q  132 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatat 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |||||    
T  44878977 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatat 44879076  T
Q  232 taaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgc 302  Q
    ||||||||||||||||||||||| | | |||||||||||||||||||||  |||| ||||||||| |||||    
T  44879077 taaattacttttttgagggggagaagtcatcacaatagcttgctattgaacttcttgagtgtcgcttatgc 44879147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 132 - 302
Target Start/End: Complemental strand, 44880944 - 44880774
Alignment:
Q  132 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatat 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |||||    
T  44880944 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatat 44880845  T
Q  232 taaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgc 302  Q
    ||||||||||||||||||||||| | | |||||||||||||||||||||  |||| ||||||||| |||||    
T  44880844 taaattacttttttgagggggagaagtcatcacaatagcttgctattgaacttcttgagtgtcgcttatgc 44880774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 131 - 301
Target Start/End: Complemental strand, 41841266 - 41841096
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||    
T  41841266 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatgggtcacacgata 41841167  T
Q  231 ttaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatg 301  Q
    ||||||||||||||||| |||||| |   | | |||||||||||||||| | |||||||||||||||||||    
T  41841166 ttaaattacttttttgatggggagaagccaccccaatagcttgctattgggcttctcgagtgtcgcctatg 41841096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 10944509 - 10944390
Alignment:
Q  135 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaa 234  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||  ||||||||||||||    
T  10944509 aactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatattaa 10944410  T
Q  235 attacttttttgagggggag 254  Q
    ||||||||||||| ||||||    
T  10944409 attacttttttgatggggag 10944390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 138 - 237
Target Start/End: Original strand, 37682057 - 37682156
Alignment:
Q  138 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 237  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   ||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 37682156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 254
Target Start/End: Original strand, 37679757 - 37679871
Alignment:
Q  140 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattac 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   |||  |||||||||||      
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttgatattaaattta 37679856  T
Q  240 ttttttgagggggag 254  Q
    ||| |||||||||||    
T  37679857 tttattgagggggag 37679871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 155 - 302
Target Start/End: Original strand, 44582870 - 44583017
Alignment:
Q  155 ttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 254  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||  |   | |||||||||||||||||||||||| |||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtagctcaatggattctatgatattaaattacttttttgagggagag 44582969  T
Q  255 taattatcacaatagcttgctattgagtttctcgagtgtcgcctatgc 302  Q
     | | |||||||||| |||||||||  ||| | |||||||| ||||||    
T  44582970 aagtcatcacaatagtttgctattggattttttgagtgtcgtctatgc 44583017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 42555197 - 42555090
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 230  Q
    ||||||||||||||||||| |  |||||||||||||||||||| || ||||||| ||||||| ||||||| ||||||||||  |||||| ||||||||||    
T  42555197 tttcaactcatacctttcttgatcttttggctaagatcaagtgcagaatctgtttttatcagtttaatatttgatatgtggttcaatgaatcacacgata 42555098  T
Q  231 ttaaatta 238  Q
    ||||||||    
T  42555097 ttaaatta 42555090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 42220959 - 42220879
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggc 212  Q
    ||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||    
T  42220959 tttcaactcatacatttttcggtcttttggctaagatcaagtgtagtatct-ttcttattagtttaatatctgatatgtggc 42220879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 181  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 42092018 - 42092093
Alignment:
Q  135 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtgg 211  Q
    |||||||||||||||  |||||||| |||| || ||||||| ||| |||||||||||| ||||||||||||||||||    
T  42092018 aactcatacctttctttgccttttg-ctaaaattaagtgtaatatttgttcttatcagtttaatatctgatatgtgg 42092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 33577755 - 33577710
Alignment:
Q  204 atatgtggcccaatgagtcacacgatattaaattacttttttgagg 249  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||    
T  33577755 atatgtggcctaatgagtcacacaatattaaattacttttttgagg 33577710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 42554709 - 42554653
Alignment:
Q  198 tatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 254  Q
    ||||||||||||||  |||||| | |||||||||||||||| |||||||||||||||    
T  42554709 tatctgatatgtgggtcaatgaattacacgatattaaattatttttttgagggggag 42554653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 9e-67; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 62 - 254
Target Start/End: Complemental strand, 38175713 - 38175521
Alignment:
Q  62 agtcccacatcaggtaatcaagaaaggatctgagtagacagaggatataaaaccagatgcgaagcctcatttcaactcatacctttctcggccttttggc 161  Q
    ||||||||||| |||||| ||||||| | || |||| ||||   |||||||| ||||||||| || ||||||||||||||||||||||||||||||||||    
T  38175713 agtcccacatcgggtaatgaagaaagaaactaagtatacagttcatataaaagcagatgcgaggcttcatttcaactcatacctttctcggccttttggc 38175614  T
Q  162 taagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 254  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  38175613 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacgatattaaattacttttttgagggggag 38175521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 131 - 303
Target Start/End: Original strand, 33988063 - 33988235
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  33988063 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacgata 33988162  T
Q  231 ttaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgct 303  Q
    ||||||||||||||| ||||||||     ||  |||||||||||||||| |||| || |||||||| ||||||    
T  33988163 ttaaattacttttttaagggggagaggccatttcaatagcttgctattgggtttttcaagtgtcgcttatgct 33988235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 130 - 254
Target Start/End: Original strand, 14683742 - 14683866
Alignment:
Q  130 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||||||    
T  14683742 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgat 14683841  T
Q  230 attaaattacttttttgagggggag 254  Q
    |||||||||||||||||||||||||    
T  14683842 attaaattacttttttgagggggag 14683866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 14654454 - 14654331
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||||    
T  14654454 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14654355  T
Q  231 ttaaattacttttttgagggggag 254  Q
    ||||||||||||||||||||||||    
T  14654354 ttaaattacttttttgagggggag 14654331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 14664245 - 14664122
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||||    
T  14664245 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14664146  T
Q  231 ttaaattacttttttgagggggag 254  Q
    ||||||||||||||||||||||||    
T  14664145 ttaaattacttttttgagggggag 14664122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 14669823 - 14669700
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||||    
T  14669823 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14669724  T
Q  231 ttaaattacttttttgagggggag 254  Q
    ||||||||||||||||||||||||    
T  14669723 ttaaattacttttttgagggggag 14669700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 14706081 - 14706204
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||||    
T  14706081 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14706180  T
Q  231 ttaaattacttttttgagggggag 254  Q
    ||||||||||||||||||||||||    
T  14706181 ttaaattacttttttgagggggag 14706204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 14708571 - 14708694
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||||    
T  14708571 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14708670  T
Q  231 ttaaattacttttttgagggggag 254  Q
    ||||||||||||||||||||||||    
T  14708671 ttaaattacttttttgagggggag 14708694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 106 - 254
Target Start/End: Complemental strand, 28366338 - 28366189
Alignment:
Q  106 atataaaaccagatgcgaagcctcatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgat 205  Q
    |||||||| |||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28366338 atataaaagcagatgcgaacccctctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 28366239  T
Q  206 atgtg-gcccaatgagtcacacgatattaaattacttttttgagggggag 254  Q
    |||||  ||||||| |||||||||||||||||||||||||| ||||||||    
T  28366238 atgtgaccccaatgggtcacacgatattaaattacttttttaagggggag 28366189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 14681592 - 14681715
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 230  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||||    
T  14681592 tttcaacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgata 14681691  T
Q  231 ttaaattacttttttgagggggag 254  Q
    ||||||||||||||||||||||||    
T  14681692 ttaaattacttttttgagggggag 14681715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 131 - 254
Target Start/End: Original strand, 14716284 - 14716407
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||  ||||||||||    
T  14716284 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgata 14716383  T
Q  231 ttaaattacttttttgagggggag 254  Q
    ||||||||||||||||||||||||    
T  14716384 ttaaattacttttttgagggggag 14716407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 14674477 - 14674597
Alignment:
Q  134 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatatta 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||| |||||||    
T  14674477 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatatta 14674576  T
Q  234 aattacttttttgagggggag 254  Q
    |||||||||||||||||||||    
T  14674577 aattacttttttgagggggag 14674597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 14679855 - 14679975
Alignment:
Q  134 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatatta 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||| |||||||    
T  14679855 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatatta 14679954  T
Q  234 aattacttttttgagggggag 254  Q
    |||||||||||||||||||||    
T  14679955 aattacttttttgagggggag 14679975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 14652525 - 14652641
Alignment:
Q  138 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   ||||||||||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14652624  T
Q  238 acttttttgagggggag 254  Q
    |||||||||||||||||    
T  14652625 acttttttgagggggag 14652641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 14662316 - 14662432
Alignment:
Q  138 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   ||||||||||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14662415  T
Q  238 acttttttgagggggag 254  Q
    |||||||||||||||||    
T  14662416 acttttttgagggggag 14662432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 14676624 - 14676727
Alignment:
Q  130 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||||||    
T  14676624 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgat 14676723  T
Q  230 atta 233  Q
    ||||    
T  14676724 atta 14676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 14667221 - 14667102
Alignment:
Q  135 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaa 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||  ||||| ||||||||    
T  14667221 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatattaa 14667122  T
Q  235 attacttttttgagggggag 254  Q
    ||||||||||  ||||||||    
T  14667121 attactttttctagggggag 14667102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 11872585 - 11872481
Alignment:
Q  141 tacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattact 240  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| ||||||||||  ||||| |||||||||||||||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaattact 11872486  T
Q  241 ttttt 245  Q
    |||||    
T  11872485 ttttt 11872481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 37422175 - 37422247
Alignment:
Q  144 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaa 216  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||| ||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtggtccaa 37422247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 28698549 - 28698625
Alignment:
Q  134 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtg 210  Q
    |||||||||| |||||||| ||||||||||||||||| |||||||| | || ||||||  ||||||| |||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatatttgatatgtg 28698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 280
Target Start/End: Complemental strand, 7448478 - 7448392
Alignment:
Q  194 ttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattga 280  Q
    |||||||||||||||||| | ||||| | | |||||||| |||||||||||||| ||| || ||  |||||||||| ||||||||||    
T  7448478 ttaatatctgatatgtggtcaaatgaattatacgatattgaattacttttttgaagggaagaaaccatcacaatagtttgctattga 7448392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 138 - 293
Target Start/End: Original strand, 3643640 - 3643795
Alignment:
Q  138 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  3643640 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccattgggtcacacgatattaaatt 3643739  T
Q  238 acttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgt 293  Q
    |||||||| |||||||| || ||||||||||||||||||||| |||||||||||||    
T  3643740 acttttttaagggggagaaactatcacaatagcttgctattgggtttctcgagtgt 3643795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 62 - 254
Target Start/End: Original strand, 7524893 - 7525084
Alignment:
Q  62 agtcccacatcaggtaatcaagaaaggatctgagtagacagaggatataaaaccagatgcgaagcctcatttcaactcatacctttctcggccttttggc 161  Q
    ||||||||||| |||||| |||||| || |||||||||||| |||||||||| || |||| | |  |  |||||| ||||||||||||||||||||||||    
T  7524893 agtcccacatcgggtaatgaagaaaagaactgagtagacagtggatataaaagca-atgcaaggtgttgtttcaagtcatacctttctcggccttttggc 7524991  T
Q  162 taagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 254  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||  ||||||||||||||||||||||||||||||||||    
T  7524992 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgatattaaattacttttttgagggggag 7525084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 1716562 - 1716442
Alignment:
Q  135 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtgg-cccaatgagtcacacgatatta 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| ||||||||||||||    
T  1716562 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcacacgatatta 1716463  T
Q  234 aattacttttttgagggggag 254  Q
    |||||||||||| ||||||||    
T  1716462 aattacttttttaagggggag 1716442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 4103249 - 4103357
Alignment:
Q  142 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagt-cacacgatattaaattact 240  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| ||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaat-agtccacacgatattaaattgct 4103347  T
Q  241 tttttgaggg 250  Q
    ||||| ||||    
T  4103348 ttttttaggg 4103357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 301
Target Start/End: Original strand, 16037861 - 16038020
Alignment:
Q  140 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattac 239  Q
    |||| |||||||||| |||  ||||||||||||||||||| ||||||||| |  ||||||| ||||| |||| | |||| |||| |||||||||||||||    
T  16037861 atacttttctcggccgtttt-ctaagatcaagtgtagtatttgttcttattatcttaatatttgata-gtggtctaatgggtcaaacgatattaaattac 16037958  T
Q  240 ttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatg 301  Q
    |||||||| ||| |  | | ||||||| ||||||||| || | |||||| ||||||| ||||    
T  16037959 ttttttgaagggaaaaagtcatcacaagagcttgctaatgggcttctcgtgtgtcgcttatg 16038020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 5350672 - 5350752
Alignment:
Q  171 gtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggg 251  Q
    ||||||||||| || ||||||| ||||||||||||||||||  |||||   ||||||||||||||||  ||| ||||||||    
T  5350672 gtgtagtatctattgttatcagtttaatatctgatatgtgggacaatggtccacacgatattaaatttatttcttgagggg 5350752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 19261216 - 19261152
Alignment:
Q  145 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgt 209  Q
    |||||| ||||||||  |||||||||||||| ||| |||||||||| | | ||||||||||||||    
T  19261216 tttctcagccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 62 - 279
Target Start/End: Complemental strand, 49108816 - 49108599
Alignment:
Q  62 agtcccacatcaggtaatcaagaaaggatctgagtagacagaggatataaaaccagatgcgaagcctc-atttcaactcatacctttctcggccttttgg 160  Q
    ||||||||||| |||||| | ||||||| |||| |||||||  ||||||||| |||| || | ||||  |||||||||||||||||||||||||||||||    
T  49108816 agtcccacatcgggtaataaggaaaggaactgaatagacagttgatataaaatcagaagcca-gcctatatttcaactcatacctttctcggccttttgg 49108718  T
Q  161 ctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaatta 260  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| | | |    
T  49108717 ctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaattacttttttgagggggagaagtca 49108618  T
Q  261 tcacaatagcttgctattg 279  Q
    ||||| |||||||||||||    
T  49108617 tcacagtagcttgctattg 49108599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 62 - 254
Target Start/End: Complemental strand, 49106712 - 49106520
Alignment:
Q  62 agtcccacatcaggtaatcaagaaaggatctgagtagacagaggatataaaaccagatgcgaagcctcatttcaactcatacctttctcggccttttggc 161  Q
    ||||||||||| |||||| ||||||||| |||| |||||||  ||||||||| |||| || |  |  | |||||||||||||||||||||||||||||||    
T  49106712 agtcccacatcgggtaatgaagaaaggaactgattagacagttgatataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggc 49106613  T
Q  162 taagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 254  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  49106612 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttttgagggggag 49106520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 105 - 301
Target Start/End: Complemental strand, 11652532 - 11652336
Alignment:
Q  105 gatataaaaccagatgcgaagcctcatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctga 204  Q
    |||||||||||||| || || ||   ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11652532 gatataaaaccagaagccaacccatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 11652433  T
Q  205 tatgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatg 301  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||| |   |   |||||||||||||||| | |||| ||||||||||||||    
T  11652432 tatgtggcccaatgggtcacacgatattaaattatttttttgagggggagaagccactccaatagcttgctattgggcttcttgagtgtcgcctatg 11652336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 131 - 302
Target Start/End: Complemental strand, 3461256 - 3461085
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 230  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||    
T  3461256 tttcaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgata 3461157  T
Q  231 ttaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcgagtgtcgcctatgc 302  Q
    ||||||||||||||| |||||||| |   ||  |||||||||||||||| ||||||||||||||| ||||||    
T  3461156 ttaaattacttttttaagggggagaagccatttcaatagcttgctattgggtttctcgagtgtcgtctatgc 3461085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 131 - 254
Target Start/End: Complemental strand, 50077313 - 50077190
Alignment:
Q  131 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgata 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||  ||||| ||||    
T  50077313 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatgata 50077214  T
Q  231 ttaaattacttttttgagggggag 254  Q
    ||||||||||||||||||||||||    
T  50077213 ttaaattacttttttgagggggag 50077190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 166 - 302
Target Start/End: Original strand, 21503706 - 21503842
Alignment:
Q  166 atcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcaca 265  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||||| | | ||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaattatttttttgagggggagaagtcatcaca 21503805  T
Q  266 atagcttgctattgagtttctcgagtgtcgcctatgc 302  Q
    |||||||||||||||  ||||| |||||||| |||||    
T  21503806 atagcttgctattgaacttctcaagtgtcgcttatgc 21503842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 139 - 250
Target Start/End: Complemental strand, 26998846 - 26998735
Alignment:
Q  139 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatta 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   |||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26998747  T
Q  239 cttttttgaggg 250  Q
    ||||||| ||||    
T  26998746 ctttttttaggg 26998735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 26984773 - 26984668
Alignment:
Q  139 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatta 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||   |||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26984674  T
Q  239 cttttt 244  Q
    ||||||    
T  26984673 cttttt 26984668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 48205832 - 48205943
Alignment:
Q  139 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatta 238  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||| |  ||||||||| |||||||| ||| ||  | ||| ||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatcttatatgtggaccattggtttacatgatattaaatta 48205931  T
Q  239 cttttttgaggg 250  Q
    ||||||||||||    
T  48205932 cttttttgaggg 48205943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 238
Target Start/End: Complemental strand, 49533807 - 49533638
Alignment:
Q  62 agtcccacatcaggtaatcaagaaaggatctgagtagacagaggatataaaaccagatgcgaagcctcatttcaactcatacctttctcggccttttggc 161  Q
    ||||||||||| | |||| ||||||| | |||| |||||||  |||||||||||||| || |  ||| ||| |||| ||||||||||||||||  |||||    
T  49533807 agtcccacatcggctaatgaagaaagaaactgattagacagttgatataaaaccagaagccagcccttattccaacccatacctttctcggcc-cttggc 49533709  T
Q  162 taagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatta 238  Q
    |||||||||||| | ||||||||||||     ||||||||||||||||  | ||||  |||||||||||||||||||    
T  49533708 taagatcaagtgca-tatctgttctta-----ttaatatctgatatgttactcaataggtcacacgatattaaatta 49533638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 41013651 - 41013548
Alignment:
Q  140 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattac 239  Q
    |||| |||||||||||||||| |||||| |||| || ||| |||||||||| | |||||||||||||||||| |||| |  ||||| | ||||||||||     
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgatatgtggaccaagggttcacatggtattaaattat 41013552  T
Q  240 tttt 243  Q
    ||||    
T  41013551 tttt 41013548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 35806165 - 35806238
Alignment:
Q  174 tagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttga 247  Q
    |||||| |||||||||||| ||||||| ||||||||   | |||||||| ||||||||||||||||||||||||    
T  35806165 tagtatttgttcttatcagtttaatatatgatatgtaatctaatgagtcgcacgatattaaattacttttttga 35806238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 26982549 - 26982646
Alignment:
Q  145 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttt 244  Q
    ||||||||||| |||||||||||||||||||| |||||   |||| || ||| ||||| ||||||||  |||||| | ||| |||||||||| | |||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctg---ttattagtttagtatctaatatgtggatcaatgatttacatgatattaaatcatttttt 26982645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 6432010 - 6431957
Alignment:
Q  145 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaat 198  Q
    ||||||||||| ||||||||||||| || |||||||| ||||||| || |||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttattagtttaat 6431957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 54677580 - 54677633
Alignment:
Q  192 ggttaatatctgatatgtggcccaatgagtcacacgatattaaattactttttt 245  Q
    ||||||| | |||||||||| | ||||  |||||||||||||||||||||||||    
T  54677580 ggttaatgtttgatatgtggtctaatggatcacacgatattaaattactttttt 54677633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  143 cctttctcggccttttggctaagatcaagtgtagtat 179  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 62 - 254
Target Start/End: Complemental strand, 10796072 - 10795881
Alignment:
Q  62 agtcccacatcaggtaatcaagaaaggatctgagtagacagaggatataaaaccagatgcgaagcctcatttcaactcatacctttctcggccttttggc 161  Q
    ||||||||||| |||||| ||||||| | |||||| |||||  ||||||||| |||| || |   ||  |||||||||||||||||||||||||||||||    
T  10796072 agtcccacatcgggtaatgaagaaagaaactgagt-gacagttgatataaaagcagaagccagctcttctttcaactcatacctttctcggccttttggc 10795974  T
Q  162 taagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 254  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  10795973 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcacacgatattaaattacttttttgagggggag 10795881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 62 - 254
Target Start/End: Complemental strand, 10791834 - 10791643
Alignment:
Q  62 agtcccacatcaggtaatcaagaaaggatctgagtagacagaggatataaaaccagatgcgaagcctcatttcaactcatacctttctcggccttttggc 161  Q
    ||||||| ||| |||||| ||||||| | || ||| |||||  ||||||||| |||| || ||  ||  |||||||||||||||||||||||||||||||    
T  10791834 agtcccatatcgggtaatgaagaaagaaactaagt-gacagttgatataaaagcagaagccaactcttctttcaactcatacctttctcggccttttggc 10791736  T
Q  162 taagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 254  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| |||||| ||||||||||||||||||||||||||||    
T  10791735 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatgatattaaattacttttttgagggggag 10791643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 30521242 - 30521358
Alignment:
Q  138 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 237  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||  |  |||||||||||| ||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcacacgatattcaatt 30521341  T
Q  238 acttttttgagggggag 254  Q
      |||||||||||||||    
T  30521342 tattttttgagggggag 30521358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 8875691 - 8875803
Alignment:
Q  140 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaat--t 237  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||| |||||   | ||||||||||||||  |    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaattat 8875790  T
Q  238 acttttttgaggg 250  Q
    |||||||||||||    
T  8875791 acttttttgaggg 8875803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 11333273 - 11333346
Alignment:
Q  181 tgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 254  Q
    |||||||||||| |||||||||||||||||| |||| |  ||||||||||||||||||||||||||||||||||    
T  11333273 tgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaattacttttttgagggggag 11333346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 21216032 - 21216131
Alignment:
Q  145 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttt 244  Q
    ||||| || |||||| ||||||||| || ||| |||| |||||||||| ||||||||| ||||||||| |||||| |||||  |||||||||||||||||    
T  21216032 tttcttggtcttttgactaagatcatgtatagcatctattcttatcagtttaatatcttatatgtggctcaatgaatcacaaaatattaaattacttttt 21216131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 13136610 - 13136670
Alignment:
Q  194 ttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggag 254  Q
    |||||||||||||||||| ||||||   ||||||||||||||||||||||||||| |||||    
T  13136610 ttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagagggag 13136670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 27134511 - 27134627
Alignment:
Q  138 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaatt 237  Q
    |||||||||| ||||||||||  |||||||||| | ||||||||||||||||  | |||||||||||||||||| | ||||||||| |||||||||||||    
T  27134511 tcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtcaaacgatattaaatt 27134610  T
Q  238 acttttttgagggggag 254  Q
    |||||||||||||||||    
T  27134611 acttttttgagggggag 27134627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 144 - 254
Target Start/End: Original strand, 8128149 - 8128258
Alignment:
Q  144 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattactttt 243  Q
    ||||||||  ||||||| |||||| ||||||||||| ||||||| | || ||||||| |||||||||| |||||| ||||||| ||||||||||  |||     
T  8128149 ctttctcgttcttttggttaagattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaatg-gtcacacaatattaaatttatttc 8128247  T
Q  244 ttgagggggag 254  Q
    |||||||||||    
T  8128248 ttgagggggag 8128258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  140 atacctttctcggccttttggctaagatcaagtgtagtatctgttct 186  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 5447 - 5556
Alignment:
Q  189 tcaggttaatatctgatatgtggcccaatgagtcacacgatattaaattacttttttgagggggagtaattatcacaatagcttgctattgagtttctcg 288  Q
    |||| |||||||||||||| ||| |||||   |||||||||||||||||  |||||||||| ||||     | |||||||||||||||||| || ||||     
T  5447 tcagtttaatatctgatatatgggccaattgttcacacgatattaaatttattttttgaggtggagagtccaccacaatagcttgctattgggtctctca 5546  T
Q  289 agtgtcgcct 298  Q
    ||||||||||    
T  5547 agtgtcgcct 5556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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