View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_4 (Length: 2151)
Name: NF3021_low_4
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 1781 - 2062
Target Start/End: Original strand, 48569141 - 48569421
Alignment:
| Q |
1781 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttc |
1880 |
Q |
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| T |
48569141 |
gaaatcttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctttttggttggaaatgctccaatggcccatatggttgttc |
48569240 |
T |
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| Q |
1881 |
agcctaatgaagaccattcaggatcctcatcttttaaggtatattcatggaaaattatggtactttggtctactcttggaaggttgacatcttct-gaaa |
1979 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48569241 |
agcctaatgaagaccattcaggatcctcatcttttaaggtatattcatagaaaattatggtactttggtctactcttggaaggttgacatcttctggaaa |
48569340 |
T |
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| Q |
1980 |
taccttcaaggcatttcctttctttggttgtaccacagcctttccaatacttctgttttctgtgtgaaaattgattatgaatt |
2062 |
Q |
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| T |
48569341 |
taccttcaaggcatttcctttctttggttgtaccacagcctttccaatacttctgttttc--tgtgaaaattgattatgaatt |
48569421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-30
Query Start/End: Original strand, 1650 - 1722
Target Start/End: Original strand, 48569018 - 48569090
Alignment:
| Q |
1650 |
aacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattcattgtgg |
1722 |
Q |
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| T |
48569018 |
aacctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtgaacattcattgtgg |
48569090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 2087 - 2120
Target Start/End: Original strand, 48569420 - 48569453
Alignment:
| Q |
2087 |
ttcctttgctgaaatcttccgatagaaattcttc |
2120 |
Q |
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| T |
48569420 |
ttcctttgctgaaatcttccgatataaattcttc |
48569453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-33; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-33
Query Start/End: Original strand, 1787 - 1973
Target Start/End: Complemental strand, 10821937 - 10821749
Alignment:
| Q |
1787 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagccta |
1886 |
Q |
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| T |
10821937 |
ttgcagtgtgcagaatctgccttgaaatcagtcttaggagatctttcgaatacatattttgtcggaaatgctccgatggcccatacggttgttcagccta |
10821838 |
T |
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| Q |
1887 |
atgaagaccattcaggatcctcatcttttaaggtatattcatggaaaa--ttatggtactttggtctactcttggaaggttgacatctt |
1973 |
Q |
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| T |
10821837 |
aagaagagcagacaggatcaacatcttttaaggtatgtttaaaggaaattttgtggtacttcaatctactattggaaggttgacatctt |
10821749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-29
Query Start/End: Original strand, 1787 - 1922
Target Start/End: Original strand, 36145449 - 36145584
Alignment:
| Q |
1787 |
ttgcagtgtgctgagtctgcattgaaatcagtcataggagatctctccaatacctattttgttggaaatgctccaatggcccatatggttgttcagccta |
1886 |
Q |
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||||||||||| || ||||| |||||||||||| | |||||||| || ||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| |
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| T |
36145449 |
ttgcagtgtgcagaatctgccttgaaatcagtcttgggagatctttcaaatacatattttgtcggaaatgctccgatggcccatattgttgttcagccta |
36145548 |
T |
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| Q |
1887 |
atgaagaccattcaggatcctcatcttttaaggtat |
1922 |
Q |
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| T |
36145549 |
aagaagagcagacaggatcaacatcttttaaggtat |
36145584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000008
Query Start/End: Original strand, 1652 - 1715
Target Start/End: Complemental strand, 10822265 - 10822202
Alignment:
| Q |
1652 |
cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
1715 |
Q |
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| T |
10822265 |
cctgtgtggcattttccagaaaaagtatatgaatcagaggaaactatgcgtaaggtgaacattc |
10822202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000008
Query Start/End: Original strand, 1652 - 1715
Target Start/End: Original strand, 36145131 - 36145194
Alignment:
| Q |
1652 |
cctgtgtggcattttccagagaaaccttatgaatcagaggaaaccatgcgtaaggtaaacattc |
1715 |
Q |
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| T |
36145131 |
cctgtgtggcattttccagaaaaagtatatgaatcagaggataccatgcgtaaggtgaacattc |
36145194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 2069 - 2120
Target Start/End: Complemental strand, 10821612 - 10821561
Alignment:
| Q |
2069 |
attatacttgctcattttttcctttgctgaaatcttccgatagaaattcttc |
2120 |
Q |
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|||||||||||||||| ||||||||||| |||||||| | ||||||||||| |
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| T |
10821612 |
attatacttgctcattctttcctttgcttaaatcttctgtcagaaattcttc |
10821561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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