View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_42 (Length: 297)
Name: NF3021_low_42
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 36704408 - 36704675
Alignment:
| Q |
19 |
catgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatcactgagatcattgagcaaaaccttcacatcttgtacatcagatnnnnn |
118 |
Q |
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| T |
36704408 |
catgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatcactgagatcattgagcaaaaccttcacatcttgtacatcagataaaaa |
36704507 |
T |
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| Q |
119 |
nntccttccctccatagccaagaaaaagtgggaattcacttgagatttttgtcatgtcatatgttggaggaaccctttgtccatagtgttgtatattttg |
218 |
Q |
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| T |
36704508 |
a-tcattccctccatagccaagaaaaagtgggaattcacttgagatttttgtcatgtcatatgttggaggaaccctttgtccatagtgttgtatattttg |
36704606 |
T |
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| Q |
219 |
tgctgcattaacataatcatactttgctatttttcctgttctgatcactactcaaatttcatagtataa |
287 |
Q |
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| T |
36704607 |
tgctgcattaacataatcatactttgctatttttcctgttctgatcactactcaaatttcatagtataa |
36704675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 36711556 - 36711819
Alignment:
| Q |
20 |
atgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatcact---gagatcattgagcaaaaccttcacatcttgtacatcagatnnn |
116 |
Q |
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| T |
36711556 |
atgtgcataatcatccttaaacaataccacacggttgctagcatcatggtcattattgagttcattgaacaaaaccttcacatcttgtacatcagataga |
36711655 |
T |
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| Q |
117 |
nnnntccttccctccatagccaagaaaaagtgggaattcacttgagatttttgtcatgtcatatgttggaggaaccctttgtccatagtgttgtatattt |
216 |
Q |
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| T |
36711656 |
gta-tctttccctccatagctgagaaaaagggggaattcactagggattttggtcacgtcataagttggaggaaccctttgtccatagtgttgtaaattt |
36711754 |
T |
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| Q |
217 |
tgtgctgcattaacataatcatactttgctatttttcctgttctgatcactactcaaatttcata |
281 |
Q |
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| T |
36711755 |
tgtgcttcatcaacataatcatactttgatatttgtccttttctgatcactactcaaatttcata |
36711819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 277
Target Start/End: Complemental strand, 36664740 - 36664625
Alignment:
| Q |
162 |
gatttttgtcatgtcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctg |
261 |
Q |
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| T |
36664740 |
gattttggtcaagtcataagttggaggagttcgatgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgtgatttttcctgttctc |
36664641 |
T |
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| Q |
262 |
atcactactcaaattt |
277 |
Q |
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| T |
36664640 |
gtcactattcaaattt |
36664625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 36677440 - 36677489
Alignment:
| Q |
196 |
tgtccatagtgttgtatattttgtgctgcattaacataatcatactttgc |
245 |
Q |
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| T |
36677440 |
tgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgc |
36677489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 36687522 - 36687571
Alignment:
| Q |
196 |
tgtccatagtgttgtatattttgtgctgcattaacataatcatactttgc |
245 |
Q |
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| T |
36687522 |
tgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgc |
36687571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 30905757 - 30905505
Alignment:
| Q |
19 |
catgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatcactgagatcattgagcaaaaccttcacatcttgtacatcagatnnnnn |
118 |
Q |
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||||||||||||| | |||||| | ||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
30905757 |
catgtgcataatcttgattgaacgctgccacgagcttgttagcatcatgatcttggaggtcattgagcaaaaccttcacatcttgtacatcagatagcat |
30905658 |
T |
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| Q |
119 |
nntccttccctccatagccaagaaaaagtgggaattcacttgagatttttgtcatgtcatatgttggaggaaccctttgtccatagtgttgtatattttg |
218 |
Q |
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|| | ||||||||| || |||||||||||||| ||| | | |||||| |||| ||| || ||||||||||| | ||| ||||||||||||| |||||| |
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| T |
30905657 |
a-tcttgccctccatatccgagaaaaagtgggaaatcattcgggattttggtcaggtcgtaagttggaggaactcgttgaccatagtgttgtacattttg |
30905559 |
T |
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| Q |
219 |
tgctgcattaacataatcatactttgctatttttcctgttctgatcactactca |
272 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30905558 |
tgcttgatcaacataatcatactttgctatttttcctgttctgatcactactca |
30905505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 11300745 - 11300706
Alignment:
| Q |
230 |
cataatcatactttgctatttttcctgttctgatcactac |
269 |
Q |
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| T |
11300745 |
cataatcatactttgctattgttccttttctgatcactac |
11300706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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