View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_45 (Length: 290)
Name: NF3021_low_45
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 44728763 - 44728703
Alignment:
| Q |
211 |
taaggtgtaccctccacattccccaccaccgaaggtgtaccctccagttaaaccaccttac |
271 |
Q |
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| T |
44728763 |
taaggtgtaccctccacattccccaccaccgggggtgtaccctccagttaaaccaccttac |
44728703 |
T |
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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 44728931 - 44728871
Alignment:
| Q |
211 |
taaggtgtaccctccacattccccaccaccgaaggtgtaccctccagttaaaccaccttac |
271 |
Q |
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| T |
44728931 |
taaggtgtaccctccacattcaccaccacccaaggtgtacccaccagttaaaccaccttac |
44728871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 44729099 - 44729039
Alignment:
| Q |
211 |
taaggtgtaccctccacattccccaccaccgaaggtgtaccctccagttaaaccaccttac |
271 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| |
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| T |
44729099 |
taaggtgtaccctccacattcaccaccacctaaggtgtaccctccagtttcaccaccttac |
44729039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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