View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_47 (Length: 282)
Name: NF3021_low_47
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 5129486 - 5129731
Alignment:
| Q |
18 |
ttttcaaggagcagataaagactaagaagacaagatagatgaagaaaagcatatataagacatcaggaaactgaatgataaagaactgtcttgtttttcc |
117 |
Q |
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| T |
5129486 |
ttttcaaggagcagataaagactaagaagacaagatagatgaagaaaagcatatataagacatcaggaaactgaatgataaa--actga---gcattaag |
5129580 |
T |
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| Q |
118 |
taatgaaggtaacaaggtagcaagtcattctccgaaaaccatagataatgactaatgaacagagattaaattttacaataaaaagaaaagacatcatttg |
217 |
Q |
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| T |
5129581 |
cactc--ggcaacaaggtagcaagtcattctctgaaaaccatagataatgactaatgaacagagattaaagtttacaa-aaaaagaaaagacatcatttt |
5129677 |
T |
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| Q |
218 |
catcctaaaacaagaactttcataaccctacctattgtatggaagttgcttcat |
271 |
Q |
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| T |
5129678 |
catcctaaaacaagaactttcataaccctacctattgtatggaagttgcttcat |
5129731 |
T |
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