View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_low_54 (Length: 250)

Name: NF3021_low_54
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_low_54
NF3021_low_54
[»] chr3 (20 HSPs)
chr3 (1-136)||(13844348-13844484)
chr3 (134-218)||(13844105-13844186)
chr3 (134-241)||(11782995-11783101)
chr3 (86-134)||(11782775-11782823)
chr3 (1-79)||(10657964-10658043)
chr3 (4-79)||(10516664-10516740)
chr3 (1-59)||(10183408-10183467)
chr3 (22-57)||(10104080-10104115)
chr3 (22-57)||(10214952-10214987)
chr3 (22-57)||(10223693-10223728)
chr3 (24-57)||(10031184-10031217)
chr3 (20-52)||(10256544-10256576)
chr3 (24-55)||(9837889-9837920)
chr3 (24-55)||(9848767-9848798)
chr3 (22-57)||(10076350-10076385)
chr3 (20-55)||(10180432-10180467)
chr3 (28-79)||(10662679-10662730)
chr3 (24-53)||(10126129-10126158)
chr3 (20-52)||(10028874-10028906)
chr3 (20-52)||(10123775-10123807)
[»] chr5 (1 HSPs)
chr5 (22-57)||(26793535-26793570)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 13844348 - 13844484
Alignment:
Q  1 caagaagacttatttgt-gcgtaagaaacaaaatttgaaagctggaaagcaaagctcacaaatggttaatggacccacatatggaaaagagtaaacactg 99  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| |||||||||||||||| |    
T  13844348 caagaagacttatttgttgtgtaagaaacaaaatttgaaagctggaaagcatagctcataaatggttaatgaacccacatagggaaaagagtaaacaccg 13844447  T
Q  100 tccaattaaaaattgccattggcatttgtggacttaa 136  Q
    |||||||||||||||||||||||||||||||||||||    
T  13844448 tccaattaaaaattgccattggcatttgtggacttaa 13844484  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 13844105 - 13844186
Alignment:
Q  134 taataagtaaataaatcattttaagaaatatataattaccaagacgtgtattgagaataccaaatagttgcaaaatgcatttgat 218  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  13844105 taataagtaaataaatcaatttaagaa-tatataattaccaagacgtgtattgagaataccaaataattgc--aatgcatttgat 13844186  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 11782995 - 11783101
Alignment:
Q  134 taataagtaaataaatcattttaagaaatatataattaccaagacgtgtattgag-aataccaaatagttgcaaaatgcatttgatgcctttccacaagt 232  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||||||||| || |||||| |||| ||||  |||| ||||| ||| |||||||||||    
T  11782995 taataagtaaataaatcaaattaagaaatatataattagcaagacgtgtattaagaaatacctaataattgc--aatgtatttgctgcttttccacaagt 11783092  T
Q  233 ctttcatct 241  Q
    |||||||||    
T  11783093 ctttcatct 11783101  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 11782775 - 11782823
Alignment:
Q  86 aagagtaaacactgtccaattaaaaattgccattggcatttgtggactt 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11782775 aagagtaaacactgtccaattaaaaattgccattggcatttgtggactt 11782823  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 10658043 - 10657964
Alignment:
Q  1 caagaagacttatttgt-gcgtaagaaacaaaatttgaaagctggaaagcaaagctcacaaatggttaatggacccacat 79  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||  | || |||||||||||||||    
T  10658043 caagaagacttatttgttgcgtaagaaacaaaatttaaaagctggaaagcaaaggtcatcagtgattaatggacccacat 10657964  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 10516740 - 10516664
Alignment:
Q  4 gaagacttatttgt-gcgtaagaaacaaaatttgaaagctggaaagcaaagctcacaaatggttaatggacccacat 79  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| || |||  | || ||| |||||||||||    
T  10516740 gaagacttatttgttgcgtaagaaacaaaatttgaaagctggaaagcataggtcatcagtgattactggacccacat 10516664  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10183467 - 10183408
Alignment:
Q  1 caagaagacttatttgt-gcgtaagaaacaaaatttgaaagctggaaagcaaagctcaca 59  Q
    ||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||    
T  10183467 caagaagacttatttgttgggtatgaaactaaatttgaaagctggaaagcaaagctcaca 10183408  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 10104115 - 10104080
Alignment:
Q  22 aagaaacaaaatttgaaagctggaaagcaaagctca 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  10104115 aagaaacaaaatttgaaagctggaaagcaaagctca 10104080  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 10214987 - 10214952
Alignment:
Q  22 aagaaacaaaatttgaaagctggaaagcaaagctca 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  10214987 aagaaacaaaatttgaaagctggaaagcaaagctca 10214952  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 10223728 - 10223693
Alignment:
Q  22 aagaaacaaaatttgaaagctggaaagcaaagctca 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  10223728 aagaaacaaaatttgaaagctggaaagcaaagctca 10223693  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 10031217 - 10031184
Alignment:
Q  24 gaaacaaaatttgaaagctggaaagcaaagctca 57  Q
    ||||||||||||||||||||||||||||||||||    
T  10031217 gaaacaaaatttgaaagctggaaagcaaagctca 10031184  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 10256576 - 10256544
Alignment:
Q  20 gtaagaaacaaaatttgaaagctggaaagcaaa 52  Q
    |||||||||||||||||||||||||||||||||    
T  10256576 gtaagaaacaaaatttgaaagctggaaagcaaa 10256544  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 55
Target Start/End: Complemental strand, 9837920 - 9837889
Alignment:
Q  24 gaaacaaaatttgaaagctggaaagcaaagct 55  Q
    ||||||||||||||||||||||||||||||||    
T  9837920 gaaacaaaatttgaaagctggaaagcaaagct 9837889  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 55
Target Start/End: Complemental strand, 9848798 - 9848767
Alignment:
Q  24 gaaacaaaatttgaaagctggaaagcaaagct 55  Q
    ||||||||||||||||||||||||||||||||    
T  9848798 gaaacaaaatttgaaagctggaaagcaaagct 9848767  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 10076385 - 10076350
Alignment:
Q  22 aagaaacaaaatttgaaagctggaaagcaaagctca 57  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10076385 aagaaacaaaatttgaaagctggaaagtaaagctca 10076350  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 10180467 - 10180432
Alignment:
Q  20 gtaagaaacaaaatttgaaagctggaaagcaaagct 55  Q
    |||||||||||||||||||||||||| |||||||||    
T  10180467 gtaagaaacaaaatttgaaagctggagagcaaagct 10180432  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 10662730 - 10662679
Alignment:
Q  28 caaaatttgaaagctggaaagcaaagctcacaaatggttaatggacccacat 79  Q
    |||||||||||||||||||||||||| |||  | || |||||||||||||||    
T  10662730 caaaatttgaaagctggaaagcaaagttcatcagtgattaatggacccacat 10662679  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 10126158 - 10126129
Alignment:
Q  24 gaaacaaaatttgaaagctggaaagcaaag 53  Q
    ||||||||||||||||||||||||||||||    
T  10126158 gaaacaaaatttgaaagctggaaagcaaag 10126129  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 10028906 - 10028874
Alignment:
Q  20 gtaagaaacaaaatttgaaagctggaaagcaaa 52  Q
    |||||||||||||||||||||||| ||||||||    
T  10028906 gtaagaaacaaaatttgaaagctgaaaagcaaa 10028874  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 10123807 - 10123775
Alignment:
Q  20 gtaagaaacaaaatttgaaagctggaaagcaaa 52  Q
    ||||||||||| |||||||||||||||||||||    
T  10123807 gtaagaaacaacatttgaaagctggaaagcaaa 10123775  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 26793570 - 26793535
Alignment:
Q  22 aagaaacaaaatttgaaagctggaaagcaaagctca 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  26793570 aagaaacaaaatttgaaagctggaaagcaaagctca 26793535  T

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