View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_low_55 (Length: 250)

Name: NF3021_low_55
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_low_55
NF3021_low_55
[»] chr4 (15 HSPs)
chr4 (14-250)||(37367531-37367767)
chr4 (14-240)||(27591086-27591312)
chr4 (14-246)||(17457625-17457856)
chr4 (22-240)||(30239001-30239219)
chr4 (22-244)||(13594879-13595101)
chr4 (22-244)||(55462001-55462223)
chr4 (22-236)||(41373777-41373991)
chr4 (22-238)||(8104658-8104874)
chr4 (14-237)||(7781102-7781326)
chr4 (22-236)||(37355563-37355778)
chr4 (22-241)||(16406119-16406339)
chr4 (115-200)||(30210868-30210953)
chr4 (124-221)||(36754136-36754233)
chr4 (21-168)||(40975874-40976021)
chr4 (28-200)||(5659767-5659939)
[»] chr3 (18 HSPs)
chr3 (14-246)||(24179842-24180074)
chr3 (22-237)||(6037058-6037274)
chr3 (22-239)||(9569749-9569967)
chr3 (22-244)||(25893998-25894220)
chr3 (22-236)||(27501184-27501398)
chr3 (30-239)||(9576259-9576469)
chr3 (28-240)||(32747144-32747355)
chr3 (22-236)||(23069268-23069483)
chr3 (81-236)||(4310755-4310910)
chr3 (58-221)||(43932358-43932522)
chr3 (28-245)||(47441595-47441812)
chr3 (28-223)||(10940549-10940744)
chr3 (22-78)||(9576222-9576278)
chr3 (28-225)||(43995853-43996050)
chr3 (29-69)||(2786707-2786747)
chr3 (117-192)||(2786532-2786607)
chr3 (128-200)||(20650405-20650477)
chr3 (22-55)||(10940452-10940485)
[»] chr7 (29 HSPs)
chr7 (14-250)||(14288485-14288721)
chr7 (14-250)||(14299670-14299906)
chr7 (14-246)||(8192173-8192404)
chr7 (14-246)||(8184613-8184844)
chr7 (22-240)||(23613163-23613381)
chr7 (22-244)||(36876326-36876548)
chr7 (22-240)||(21643293-21643510)
chr7 (22-236)||(1379738-1379952)
chr7 (22-236)||(5049129-5049343)
chr7 (22-236)||(6796229-6796443)
chr7 (22-246)||(8141677-8141901)
chr7 (22-236)||(2447439-2447653)
chr7 (68-250)||(6020127-6020309)
chr7 (14-244)||(3923316-3923546)
chr7 (22-240)||(9642144-9642362)
chr7 (22-236)||(48346316-48346525)
chr7 (22-236)||(48352700-48352909)
chr7 (5-232)||(15949931-15950158)
chr7 (28-238)||(19090572-19090781)
chr7 (14-237)||(26602763-26602987)
chr7 (81-228)||(15915414-15915561)
chr7 (58-238)||(22853480-22853660)
chr7 (58-238)||(37026493-37026674)
chr7 (58-238)||(39433675-39433855)
chr7 (129-236)||(1947980-1948087)
chr7 (58-222)||(33849904-33850069)
chr7 (5-72)||(15925097-15925164)
chr7 (14-55)||(6020091-6020132)
chr7 (178-222)||(45434369-45434413)
[»] chr8 (14 HSPs)
chr8 (14-246)||(36424950-36425182)
chr8 (22-239)||(36020965-36021182)
chr8 (22-236)||(6463793-6464007)
chr8 (22-236)||(7312138-7312352)
chr8 (22-236)||(8012537-8012751)
chr8 (22-236)||(36004701-36004915)
chr8 (22-236)||(36076756-36076970)
chr8 (22-236)||(16709898-16710113)
chr8 (88-236)||(11357467-11357615)
chr8 (22-235)||(1238993-1239207)
chr8 (58-200)||(12769713-12769856)
chr8 (58-221)||(15013184-15013348)
chr8 (61-239)||(45067692-45067871)
chr8 (22-55)||(11357440-11357473)
[»] chr5 (20 HSPs)
chr5 (14-246)||(25893868-25894100)
chr5 (22-240)||(40957844-40958062)
chr5 (22-236)||(2958651-2958865)
chr5 (22-236)||(2967120-2967334)
chr5 (22-236)||(29974750-29974964)
chr5 (22-236)||(29981253-29981467)
chr5 (22-236)||(30021678-30021892)
chr5 (14-240)||(29413888-29414114)
chr5 (22-236)||(34356482-34356696)
chr5 (22-236)||(34358273-34358487)
chr5 (5-237)||(5876995-5877228)
chr5 (5-240)||(22360738-22360973)
chr5 (5-240)||(22314604-22314839)
chr5 (28-244)||(42151590-42151805)
chr5 (22-235)||(4974346-4974560)
chr5 (58-239)||(12505042-12505223)
chr5 (23-221)||(2439580-2439778)
chr5 (117-168)||(30579543-30579594)
chr5 (21-95)||(9334414-9334488)
chr5 (21-73)||(30579396-30579448)
[»] chr6 (22 HSPs)
chr6 (14-237)||(4737600-4737823)
chr6 (22-246)||(32327710-32327934)
chr6 (22-238)||(7061732-7061948)
chr6 (22-238)||(7068918-7069134)
chr6 (22-229)||(34710786-34710993)
chr6 (22-238)||(4187474-4187690)
chr6 (14-203)||(4668617-4668806)
chr6 (22-236)||(1427640-1427854)
chr6 (22-236)||(4019452-4019666)
chr6 (22-236)||(4025878-4026092)
chr6 (22-236)||(4717757-4717971)
chr6 (22-244)||(31128516-31128738)
chr6 (58-250)||(31548672-31548864)
chr6 (22-236)||(34649591-34649805)
chr6 (22-236)||(34656042-34656256)
chr6 (22-240)||(9863989-9864208)
chr6 (24-241)||(13671044-13671262)
chr6 (22-235)||(21261800-21262014)
chr6 (64-238)||(27670819-27670993)
chr6 (28-196)||(1166724-1166892)
chr6 (14-49)||(31548844-31548879)
chr6 (60-168)||(14121788-14121896)
[»] chr2 (20 HSPs)
chr2 (22-246)||(43268629-43268853)
chr2 (22-236)||(2158402-2158616)
chr2 (22-236)||(2164818-2165032)
chr2 (22-236)||(12951589-12951803)
chr2 (22-236)||(34840473-34840687)
chr2 (22-244)||(36781411-36781633)
chr2 (22-236)||(45012774-45012988)
chr2 (22-246)||(13901190-13901409)
chr2 (22-240)||(15853325-15853543)
chr2 (22-236)||(34834029-34834243)
chr2 (22-240)||(42930609-42930826)
chr2 (14-240)||(2020667-2020893)
chr2 (88-240)||(29485670-29485822)
chr2 (21-238)||(21341167-21341384)
chr2 (28-236)||(16816572-16816779)
chr2 (28-236)||(16855729-16855936)
chr2 (28-237)||(21067162-21067371)
chr2 (30-75)||(11909153-11909198)
chr2 (14-55)||(29485816-29485857)
chr2 (107-168)||(33034601-33034662)
[»] scaffold0475 (1 HSPs)
scaffold0475 (14-203)||(8605-8794)
[»] scaffold0053 (2 HSPs)
scaffold0053 (22-236)||(50481-50695)
scaffold0053 (28-225)||(71228-71424)
[»] scaffold0043 (1 HSPs)
scaffold0043 (22-236)||(4222-4436)
[»] chr1 (22 HSPs)
chr1 (22-236)||(45016572-45016786)
chr1 (22-236)||(42092687-42092901)
chr1 (22-244)||(45023306-45023528)
chr1 (14-240)||(28996782-28997008)
chr1 (22-236)||(6239435-6239649)
chr1 (14-240)||(29002498-29002724)
chr1 (22-236)||(39052535-39052749)
chr1 (22-236)||(39058907-39059121)
chr1 (22-236)||(43687410-43687625)
chr1 (28-236)||(1175373-1175580)
chr1 (28-236)||(26622240-26622447)
chr1 (28-238)||(41304765-41304974)
chr1 (28-228)||(23761586-23761785)
chr1 (25-241)||(35085775-35085992)
chr1 (22-241)||(44242130-44242350)
chr1 (22-223)||(9869888-9870090)
chr1 (22-241)||(4600302-4600522)
chr1 (58-223)||(1115257-1115423)
chr1 (58-222)||(32798516-32798680)
chr1 (29-222)||(31073133-31073322)
chr1 (58-221)||(44917185-44917348)
chr1 (193-238)||(5444634-5444679)
[»] scaffold0510 (2 HSPs)
scaffold0510 (28-240)||(1799-2010)
scaffold0510 (28-238)||(8126-8335)
[»] scaffold0513 (1 HSPs)
scaffold0513 (28-238)||(11380-11589)
[»] scaffold0060 (1 HSPs)
scaffold0060 (58-199)||(15975-16117)
[»] scaffold0343 (3 HSPs)
scaffold0343 (58-178)||(3501-3621)
scaffold0343 (163-219)||(3442-3498)
scaffold0343 (23-73)||(3710-3760)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 37367531 - 37367767
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37367531 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagttagggcggtttagcctct 37367630  T
Q  114 tacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctat 213  Q
     |||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37367631 cacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtat 37367730  T
Q  214 aaatagcccactcaaccatttcattgagatatatagt 250  Q
    |||||||||||||||||||||||||||||||||||||    
T  37367731 aaatagcccactcaaccatttcattgagatatatagt 37367767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 27591312 - 27591086
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27591312 agatccttcgccaccaactcgcaatggcgagtggaaggcgagaaaactcgccatggcgagtggaatgactcgcgaggcgagttagggcggtttagcctct 27591213  T
Q  114 tacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctat 213  Q
     |||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27591212 cacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtat 27591113  T
Q  214 aaatagcccactcaaccatttcattga 240  Q
    |||||||||||||||||||||||||||    
T  27591112 aaatagcccactcaaccatttcattga 27591086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 17457856 - 17457625
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    ||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17457856 agatctttcgccaccaactcgcaatggcgagtggaaggcgagaacactcgccatggcgagtggaatgactcgcgaggcgagta-gggcggtttagcctct 17457758  T
Q  114 tacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctat 213  Q
     |||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17457757 cacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtat 17457658  T
Q  214 aaatagcccactcaaccatttcattgagatata 246  Q
    ||||||||||||||||||||||||||| |||||    
T  17457657 aaatagcccactcaaccatttcattgaaatata 17457625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 30239219 - 30239001
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||| |||||||    
T  30239219 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagctagggcagtttagcctctcacagctg 30239120  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30239119 acgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcggaattctataaatagcc 30239020  T
Q  222 cactcaaccatttcattga 240  Q
    |||||||||||||||||||    
T  30239019 cactcaaccatttcattga 30239001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 13595101 - 13594879
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| ||   | ||||||||||||||| ||||||||||||||||| |||||||    
T  13595101 cgccaccaactcgcaatggcgagtggaaggcgagcccactcgccatggcgaatgattttactcgcgaggcgagttagggcggtttagcctctcacagctg 13595002  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  13595001 acgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgagtagatgcagaatcagaattctataaatagcc 13594902  T
Q  222 cactcaaccatttcattgagata 244  Q
    |||||||||||||||||||||||    
T  13594901 cactcaaccatttcattgagata 13594879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 55462001 - 55462223
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||| | ||   | ||||||||||||||| ||||||||||||||||| |||||||    
T  55462001 cgccaccaactcgcaatggcgagtggaaggcgagcccactcgccatggcaaatgattttactcgcgaggcgagttagggcggtttagcctctcacagctg 55462100  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  55462101 acgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgagtagatgcagaatcagaattctataaatagcc 55462200  T
Q  222 cactcaaccatttcattgagata 244  Q
    |||||||||||||||||||||||    
T  55462201 cactcaaccatttcattgagata 55462223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 41373991 - 41373777
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  41373991 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 41373892  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  41373891 acgtggcacaaacccaatggggaagaaacttcaactcgccacggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 41373792  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  41373791 cactcaaccatttca 41373777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 8104874 - 8104658
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||| ||||||||||||||||||||||||||  |||||||||||||| ||   | ||||||||||||||| ||||||||||||||||| |||||||    
T  8104874 cgccaccagctcgcaatggcgagtggaaggcgagcccactcgccatggcgaatgattttactcgcgaggcgagttagggcggtttagcctctcacagctg 8104775  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  8104774 acgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgagtagatgcagaatcagaattctataaatagcc 8104675  T
Q  222 cactcaaccatttcatt 238  Q
    |||||||||||| ||||    
T  8104674 cactcaaccattacatt 8104658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 7781326 - 7781102
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||     ||||| || |||||| ||||||||||| | |||    
T  7781326 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcgaactcgccatggcgaatgtgtctactcgtgaagcgagttagggcggtttaac-tct 7781228  T
Q  114 t-acagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattcta 212  Q
    | |||| ||| |||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||    
T  7781227 tcacagatgacgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgtgaggcgagttgatgcagaatcagaattcta 7781128  T
Q  213 taaat-agcccactcaaccatttcat 237  Q
    ||||| |||||||| |||||||||||    
T  7781127 taaataagcccacttaaccatttcat 7781102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 37355563 - 37355778
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggttta-gcctcttacagct 120  Q
    |||||||||||||||||||||||| |||||||||     ||||||||||||| | ||  ||||||||||||||| ||||||||||| || ||| |  |||    
T  37355563 cgccaccaactcgcaatggcgagtagaaggcgagtttgttcgccatggcgagggaaagtactcgcgaggcgagttagggcggtttaagcttctcattgct 37355662  T
Q  121 gatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagc 220  Q
    ||  |||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  ||||||| |||||||||||||||||||    
T  37355663 gacatggcgcaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagtgaatgcagactcagaattctataaatagc 37355762  T
Q  221 ccactcaaccatttca 236  Q
    ||||||||||||||||    
T  37355763 ccactcaaccatttca 37355778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 16406339 - 16406119
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggttta-gcctcttacagct 120  Q
    |||||||||||||||||||| |||  ||||||||     ||||||||||||||| ||  |||| |||||||||| ||||||||||| || ||| || | |    
T  16406339 cgccaccaactcgcaatggcaagtataaggcgagtctgttcgccatggcgagtgcaagtactcacgaggcgagttagggcggtttaagcttctcactgat 16406240  T
Q  121 gatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagc 220  Q
    || |||||||||||||||||| |||| ||||||||||||||||||||||||||  |||||||||||||||| |||||| | | |||||||||||||||||    
T  16406239 gacgtggcacaaacccaatggtgaaggaacttcaactcgccatggcgaatgaagaagctcgcgaggcgagtggatgcaaatttagaattctataaatagc 16406140  T
Q  221 ccactcaaccatttcattgag 241  Q
     ||||||| ||||||| ||||    
T  16406139 tcactcaatcatttcaatgag 16406119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 30210868 - 30210953
Alignment:
Q  115 acagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcaga 200  Q
    |||| ||| |||||||||||| | ||| |||| ||||| |||||||||||||||||||| || ||||||||||||||||| |||||    
T  30210868 acagatgacgtggcacaaacctactggtgaaggaacttaaactcgccatggcgaatgaaggaactcgcgaggcgagttgaagcaga 30210953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 36754136 - 36754233
Alignment:
Q  124 gtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    |||||||||||||| ||| |||| ||| ||||||||||||||||||||||    ||| ||||||||||||| |||||    |||||||||||||||||    
T  36754136 gtggcacaaacccactggtgaagtaacctcaactcgccatggcgaatgaagttactcacgaggcgagttgaggcagaacaggaattctataaatagcc 36754233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 40975874 - 40976021
Alignment:
Q  21 tcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagct 120  Q
    |||||||||||  || |||| ||||  | ||||||| |||| ||||||||||||  ||| ||||||||||||||| | |||||  ||  | |||| ||||    
T  40975874 tcgccaccaacctgccatggtgagttcatggcgagctaacttgccatggcgagtaaaattactcgcgaggcgagttaaggcggcctaatcccttaaagct 40975973  T
Q  121 gatgtggcacaaacccaatggggaagaaacttcaactcgccatggcga 168  Q
    || |||||| ||| ||| |||| ||||||  ||||||| |||||||||    
T  40975974 gacgtggcagaaatccactgggaaagaaagctcaactcaccatggcga 40976021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 5659767 - 5659939
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcct-cttacagctgatgtg 126  Q
    |||||||||| ||||| |||||||||||| ||||||| ||||| | || | | ||||||||||||||| |||| ||   |  || || | |  ||| |||    
T  5659767 caactcgcaaaggcgaatggaaggcgagc-aactcgcaatggcaaatgcatttactcgcgaggcgagttagggtggccaaaactcctcaaaagtgacgtg 5659865  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcaga 200  Q
    ||||||||| | ||| |||| ||| | ||||||||| ||| ||||||    |||||||||||||||||||||||    
T  5659866 gcacaaacctactggtgaaggaaccttaactcgccaaggcaaatgaagttactcgcgaggcgagttgatgcaga 5659939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 24180074 - 24179842
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24180074 agatccttcgccaccaactcgcaatggctagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagttagggcggtttagcctct 24179975  T
Q  114 tacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctat 213  Q
     |||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24179974 cacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtat 24179875  T
Q  214 aaatagcccactcaaccatttcattgagatata 246  Q
    |||||||||||||||||||||||||||||||||    
T  24179874 aaatagcccactcaaccatttcattgagatata 24179842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 6037274 - 6037058
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagct 120  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||  |||||||||||||| | | ||||||    
T  6037274 cgccaccaactcgcaatggcgagtggaaggcgagcttactcgccatggtgagtggaatgactcgcgaggcgagctagggcggtttagccccctcacagct 6037175  T
Q  121 gatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagc 220  Q
    || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6037174 gacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagc 6037075  T
Q  221 ccactcaaccatttcat 237  Q
    |||||||||||||||||    
T  6037074 ccactcaaccatttcat 6037058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 9569749 - 9569967
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttaca-gct 120  Q
    |||||||||||||||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||| | ||||||||||||||| | | |||    
T  9569749 cgccaccaactcgcaatggcgagtggaaggcgagcttactcaccatggcgagtggattgactcgcgaggcgagtgaaggcggtttagcctctcaaatgct 9569848  T
Q  121 gatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagc 220  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||  | |||| |||||||||||||||||||    
T  9569849 gacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaaggaaggagctcgcgaggcgagttagtacagaatcagaattctataaatagc 9569948  T
Q  221 ccactcaaccatttcattg 239  Q
    |||||||||||||||||||    
T  9569949 ccactcaaccatttcattg 9569967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 25894220 - 25893998
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| ||   | ||||||||||||||| ||||||||||||||||| |||||||    
T  25894220 cgccaccaactcgcaatggcgagtggaaggcgagcccactcgccatggcgaatgcttttactcgcgaggcgagttagggcggtttagcctctcacagctg 25894121  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||  |||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  25894120 acgtggcacaaacccaatgaagaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgagtagatgcagaatcagaattctataaatagcc 25894021  T
Q  222 cactcaaccatttcattgagata 244  Q
    |||||||||||||||||| ||||    
T  25894020 cactcaaccatttcattgtgata 25893998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 27501184 - 27501398
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  27501184 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 27501283  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  27501284 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgatgcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 27501383  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  27501384 cactcaaccatttca 27501398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 9576259 - 9576469
Alignment:
Q  30 actcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttaca-gctgatgtggc 128  Q
    |||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| | | ||||| |||||    
T  9576259 actcgccatggcgagtggaaggcgagcttactcgccatggcgagtggaatgactcgcgaggcgagtgaaggcggtttagcctctcaaatgctgacgtggc 9576358  T
Q  129 acaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactcaa 228  Q
    |||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||  | |||| |||||||||||||||||||||||||||    
T  9576359 acaaacccaatggggaagaaacttcaactcgccatggcaaaggaaggagctcgcgaggcgagttagtacagaatcagaattctataaatagcccactcaa 9576458  T
Q  229 ccatttcattg 239  Q
    |||||||||||    
T  9576459 ccatttcattg 9576469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 28 - 240
Target Start/End: Complemental strand, 32747355 - 32747144
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctgatgtgg 127  Q
    ||||||||| |||||||||||||||||||  |||| ||||||||| || | | ||||||||||||||| ||||||||||||||||| |||||||| ||||    
T  32747355 caactcgca-tggcgagtggaaggcgagcttactctccatggcgaatgaatttactcgcgaggcgagttagggcggtttagcctctcacagctgacgtgg 32747257  T
Q  128 cacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactca 227  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  32747256 cacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgagtagatgcagaatcagaattctataaatagcccactca 32747157  T
Q  228 accatttcattga 240  Q
    |||||||||||||    
T  32747156 accatttcattga 32747144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 23069483 - 23069268
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggttta-gcctcttacagct 120  Q
    |||||||||||||||||||||||| |||||||||     | ||||||||||| | ||  ||||||||||||||| ||||||||||| || ||| |  |||    
T  23069483 cgccaccaactcgcaatggcgagtagaaggcgagtttggttgccatggcgagggaaagtactcgcgaggcgagttagggcggtttaagcttctcattgct 23069384  T
Q  121 gatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagc 220  Q
    ||  |||  ||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||  ||||||| |||||||||||||||||||    
T  23069383 gacatggttcaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcaaggcgagtgaatgcagactcagaattctataaatagc 23069284  T
Q  221 ccactcaaccatttca 236  Q
    ||||||||||||||||    
T  23069283 ccactcaaccatttca 23069268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 4310755 - 4310910
Alignment:
Q  81 actcgcgaggcgagtaagggcggttta-gcctcttacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagct 179  Q
    ||||||||||||||| ||||||||||| || ||| || ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||    
T  4310755 actcgcgaggcgagttagggcggtttaagcttctcactgctgacgtggcacaaacccaatggggaagaaacttcaactcgcca-ggcgaatgaagtagct 4310853  T
Q  180 cgcgaggcgagttgatgcagagtcagaattctataaatagcccactcaaccatttca 236  Q
    || |||||||||  ||||||| |||||||||||||||||||||||||||||||||||    
T  4310854 cgtgaggcgagtgcatgcagactcagaattctataaatagcccactcaaccatttca 4310910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 43932522 - 43932358
Alignment:
Q  58 aactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctc-ttacagctgatgtggcacaaacccaatggggaagaaacttcaac 156  Q
    ||||||| |||||||||| ||| ||||| ||||||||| |||||||  ||  ||| ||| || ||| ||||| |||||  ||||| |||||||| |||||    
T  43932522 aactcgcaatggcgagtgaaattactcgtgaggcgagttagggcggcctaaactccttagaggtgacgtggctcaaacttaatggtgaagaaacatcaac 43932423  T
Q  157 tcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    ||||||||||||||| |    |||||||||||||||||||||||   ||||||||||||||||||    
T  43932422 tcgccatggcgaatggagttactcgcgaggcgagttgatgcagatcaagaattctataaatagcc 43932358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 245
Target Start/End: Complemental strand, 47441812 - 47441595
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtg 126  Q
    |||||| ||| ||||| |||||||||||||| ||||| |||||||||| | | |||| | |||||||| ||||||   ||   || | | || ||| |||    
T  47441812 caactcccaaaggcgaatggaaggcgagcaa-ctcgcaatggcgagtgcatttactcacaaggcgagttagggcgacctaaattcctcaaagatgacgtg 47441714  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactc 226  Q
    || |||||||| ||| |||| ||| |||||||||||| |||||||||    |||||||||||||||||||||||    |||||||||||||||||||||     
T  47441713 gctcaaacccagtggtgaagtaacctcaactcgccattgcgaatgaagttactcgcgaggcgagttgatgcagaacatgaattctataaatagcccactt 47441614  T
Q  227 aaccatttcattgagatat 245  Q
     | || |||||||||||||    
T  47441613 gatcacttcattgagatat 47441595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 223
Target Start/End: Original strand, 10940549 - 10940744
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtg 126  Q
    |||||| ||| |||||||| ||||||||||| ||||| |||||||||| | | | ||| ||||||||| |||||||  ||  ||| | | ||  || |||    
T  10940549 caactcacaacggcgagtgaaaggcgagcaa-ctcgcaatggcgagtgaatttaatcgtgaggcgagttagggcggcctaaactcctcaaaggcgacgtg 10940647  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaat-gaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagccca 223  Q
    || |||||  ||||| |||||||| ||||||||||||||||||| || | | |||||||||||||||||||||||   ||||||||||||||||||||    
T  10940648 gctcaaacttaatggtgaagaaacatcaactcgccatggcgaatagagtta-ctcgcgaggcgagttgatgcagatcaagaattctataaatagccca 10940744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 9576222 - 9576278
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaa 78  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  9576222 cgccaccaactcgcaatggcgagtggaaggcgagcttactcgccatggcgagtggaa 9576278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 43996050 - 43995853
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtg 126  Q
    |||||||||| ||||| | |||||||||||| |||||  ||| ||||| | | ||||||||||||||| |||||||| ||  ||| | | || ||| |||    
T  43996050 caactcgcaaaggcgaattgaaggcgagcaa-ctcgcactggtgagtgcatttactcgcgaggcgagttagggcggtctaaactcctcaaaggtgacgtg 43995952  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccact 225  Q
    || |||||||| ||| |||| ||| |||||||||||| |||| ||||    ||||||||||||||| |||||||    |||| ||||||||||||||||    
T  43995951 gctcaaacccactggtgaagtaacctcaactcgccattgcgagtgaagttactcgcgaggcgagttaatgcagaacatgaatcctataaatagcccact 43995853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 2786747 - 2786707
Alignment:
Q  29 aactcgcaatggcgagtggaaggcgagcaaactcgccatgg 69  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  2786747 aactcgcaatggcgagtggaaggcgagcaaactcggcatgg 2786707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 2786607 - 2786532
Alignment:
Q  117 agctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagtt 192  Q
    |||||| |||||| ||||||| ||| |||||||| |||||||||||||||||||| ||   || ||||||||||||    
T  2786607 agctgacgtggcagaaacccactggtgaagaaacatcaactcgccatggcgaatgcatttacttgcgaggcgagtt 2786532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 20650405 - 20650477
Alignment:
Q  128 cacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcaga 200  Q
    |||||||||| | | |||| ||| |||||||| |||||||||||||    |||||||||||||||||||||||    
T  20650405 cacaaacccactagtgaagtaacctcaactcggcatggcgaatgaagctactcgcgaggcgagttgatgcaga 20650477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 10940452 - 10940485
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgag 55  Q
    |||||||||||||||||||||||| |||||||||    
T  10940452 cgccaccaactcgcaatggcgagtagaaggcgag 10940485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 14288721 - 14288485
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14288721 agatccttcaccaccaactcgcaatggcgagtggaaggcgagaaaactcgccatggcgagtggaatgactcgcgaggcgagttagggcggtttagcctct 14288622  T
Q  114 tacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctat 213  Q
     |||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14288621 cacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtat 14288522  T
Q  214 aaatagcccactcaaccatttcattgagatatatagt 250  Q
    ||||||||||||||||||||||||||||||| |||||    
T  14288521 aaatagcccactcaaccatttcattgagatacatagt 14288485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 14299906 - 14299670
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14299906 agatccttcaccaccaactcgcaatggcgagtggaaggcgagaaaactcgccatggcgagtggaatgactcgcgaggcgagttagggcggtttagcctct 14299807  T
Q  114 tacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctat 213  Q
     |||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14299806 cacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtat 14299707  T
Q  214 aaatagcccactcaaccatttcattgagatatatagt 250  Q
    ||||||||||||||||||||||||||||||| |||||    
T  14299706 aaatagcccactcaaccatttcattgagatacatagt 14299670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 8192173 - 8192404
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    ||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8192173 agatctttcgccaccaactcgcaatggcgagtggaaggcgagaacactcgccatggcgagtggaatgactcgcgaggcgagta-gggcggtttagcctct 8192271  T
Q  114 tacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctat 213  Q
     |||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8192272 cacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtat 8192371  T
Q  214 aaatagcccactcaaccatttcattgagatata 246  Q
    ||||||||||||||||||||||||||| |||||    
T  8192372 aaatagcccactcaaccatttcattgatatata 8192404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 8184613 - 8184844
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    ||||| |||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8184613 agatctttcgccaccaactcgcaatggcgagtggaaggcgagaacactagccatggcgagtggaatgactcgcgaggcgagta-gggcggtttagcctct 8184711  T
Q  114 tacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctat 213  Q
     |||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8184712 cacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtat 8184811  T
Q  214 aaatagcccactcaaccatttcattgagatata 246  Q
    ||||||||||||||||||||||||||| |||||    
T  8184812 aaatagcccactcaaccatttcattgatatata 8184844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 23613381 - 23613163
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||| |||||||    
T  23613381 cgccaccaactcgaaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagctagggaggtttagcctctcacagctg 23613282  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23613281 acgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcggaattctataaatagcc 23613182  T
Q  222 cactcaaccatttcattga 240  Q
    |||||||||||||||||||    
T  23613181 cactcaaccatttcattga 23613163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 36876548 - 36876326
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||| || |||||||    
T  36876548 cgccaccaactcgcaatggcgagtggcaggcgagcttactcgccatggcgagtggaatgacccgcgaggcgagctagggcggtttagccgctcacagctg 36876449  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36876448 acgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtataaatagcc 36876349  T
Q  222 cactcaaccatttcattgagata 244  Q
    |||||||||||||||||| ||||    
T  36876348 cactcaaccatttcattgggata 36876326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 21643510 - 21643293
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||||||||| | |  |||||||||||||  ||||||||||||||||| |||||||    
T  21643510 cgccaccaactcgcaatggctagtggaaggcgagcttactcgccatggcgagtgcattt-ctcgcgaggcgagctagggcggtttagcctctcacagctg 21643412  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21643411 acgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 21643312  T
Q  222 cactcaaccatttcattga 240  Q
    |||||||||||||||||||    
T  21643311 cactcaaccatttcattga 21643293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 1379952 - 1379738
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  1379952 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 1379853  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  1379852 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 1379753  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  1379752 cactcaaccatttca 1379738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 5049129 - 5049343
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  5049129 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 5049228  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  5049229 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 5049328  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  5049329 cactcaaccatttca 5049343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 6796443 - 6796229
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  6796443 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 6796344  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  6796343 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 6796244  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  6796243 cactcaaccatttca 6796229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 8141677 - 8141901
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  8141677 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 8141776  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  8141777 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgattgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 8141876  T
Q  222 cactcaaccatttcattgagatata 246  Q
    |||||||||||||||  ||||||||    
T  8141877 cactcaaccatttcagagagatata 8141901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 2447653 - 2447439
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||| ||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  2447653 cgccaccaactcgcaatggctagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 2447554  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  2447553 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 2447454  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  2447453 cactcaaccatttca 2447439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 68 - 250
Target Start/End: Original strand, 6020127 - 6020309
Alignment:
Q  68 ggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcg 167  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||||||||||||| |||| ||| ||||||||||||||||    
T  6020127 ggcgagtggaatgactcgcgaggcgagttagggcggtttagcctctcacatctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcg 6020226  T
Q  168 aatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactcaaccatttcattgagatatatagt 250  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  6020227 aatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtataaatagcccactcaaccatttcattgtgatatatagt 6020309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 3923316 - 3923546
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||     |||||||||||||||||| || |||||||||||    
T  3923316 agatctttcgccaccaactcgcaatggcgagtggaaggcgaacaaactcgccatggcgaatgtgtctactcgcgaggcgagtaagagcagtttagcctct 3923415  T
Q  114 tacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctat 213  Q
     || ||||| |||||||||||||||||| |||| ||| | |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  3923416 caccgctgacgtggcacaaacccaatggcgaaggaaccttaactcgccatggcgaatgaaggagctcgcgaggcgagtagatgcagaatcagaattctat 3923515  T
Q  214 aaatagcccactcaaccatttcattgagata 244  Q
    |||||||||||||||| | ||||||||||||    
T  3923516 aaatagcccactcaacgagttcattgagata 3923546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 9642144 - 9642362
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||||| ||   | |||| |||||||||| ||||||||||||||||| |||||||    
T  9642144 cgccaccaactcgcaatggcgagtggaaggcgagcccactcgtcatggcgaatgattttactcacgaggcgagttagggcggtttagcctctcacagctg 9642243  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| |||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  9642244 acgtggcacaaacccaatggcgaaggaacctcaactcgccctggcgaatgaaggagctcgcgaggcgagtagatgcagaatcagaattctataaatagcc 9642343  T
Q  222 cactcaaccatttcattga 240  Q
    |||||||||||||||||||    
T  9642344 cactcaaccatttcattga 9642362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 48346316 - 48346525
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  ||||||| ||||||     | |||||||||||||||||||||||||||||||||| |  ||||    
T  48346316 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccgtggcga-----aggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 48346410  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  48346411 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 48346510  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  48346511 cactcaaccatttca 48346525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 48352700 - 48352909
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  ||||||| ||||||     | |||||||||||||||||||||||||||||||||| |  ||||    
T  48352700 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccgtggcga-----aggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 48352794  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  48352795 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 48352894  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  48352895 cactcaaccatttca 48352909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 15950158 - 15949931
Alignment:
Q  5 gagcagcagagatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggt 104  Q
    ||||| || ||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||     ||||||||||||||| ||||||||    
T  15950158 gagcatcaaagatccttcgccaccaactcgcaatggcgagtgaaaggcaagcgaactcgccatggcgaatgtgtctactcgcgaggcgagttagggcggt 15950059  T
Q  105 ttagcctctt-acagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtc 203  Q
    ||| | |||| | || |||||||||||||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  15950058 ttaac-tcttcatagatgatgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgagttgatgtagagtc 15949960  T
Q  204 agaattctataaatagcccactcaaccat 232  Q
    |||||||||||||||||||||||||||||    
T  15949959 agaattctataaatagcccactcaaccat 15949931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 19090781 - 19090572
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtg 126  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||   ||| ||||||||||| ||||| || || | |||| |||| ||| |||    
T  19090781 caactcgca-tggcgagtggaaggcgagcatactcgccatggcgagtggatgtacttgcgaggcgagttagggcagtctaac-tcttcacagatgacgtg 19090684  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactc 226  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  19090683 gcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgagttcatgcagaatcagaattctataaatagcccactc 19090584  T
Q  227 aaccatttcatt 238  Q
    ||||||||||||    
T  19090583 aaccatttcatt 19090572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 26602987 - 26602763
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||     | |||||||| |||| ||||||||||| | |||    
T  26602987 agatccttcgccaccaacttgcaatggcgagtggaaggcgagcgaactcgccatggcgaatgtgtctattcgcgaggggagttagggcggtttaac-tct 26602889  T
Q  114 t-acagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattcta 212  Q
    | |||| ||| |||||||||||||||||| |||| ||| ||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||    
T  26602888 tcacagatgacgtggcacaaacccaatggtgaaggaacctcaactcaccatggcgaattaaggagctcgcgaggcgagttgatgcagaatcagaattcta 26602789  T
Q  213 taaat-agcccactcaaccatttcat 237  Q
    ||||| ||||||||||||||||||||    
T  26602788 taaataagcccactcaaccatttcat 26602763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 81 - 228
Target Start/End: Complemental strand, 15915561 - 15915414
Alignment:
Q  81 actcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagct 179  Q
    ||||||||||||||| ||||||||||| | |||| |||| |||  ||||||||||||||||| |||| ||| |||||||||||||||||||||| |||||    
T  15915561 actcgcgaggcgagttagggcggtttaac-tcttcacagatgacatggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagct 15915463  T
Q  180 cgcgaggcgagttgatgcagagtcagaattctataaatagcccactcaa 228  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15915462 tgcgaggcgagttgatgcagagtcagaattctataaatagcccactcaa 15915414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 238
Target Start/End: Original strand, 22853480 - 22853660
Alignment:
Q  58 aactcgccatggcgagtggaatg-actcgcgaggcgagtaagggcggtttagcct-cttacagctgatgtggcacaaacccaatggggaagaaacttcaa 155  Q
    ||||| |||||||||| |||||| ||||||||||||||| ||||||| |||| || || |||||||| |||||||||||||||||| |||| |||||||     
T  22853480 aactcaccatggcgag-ggaatgtactcgcgaggcgagttagggcggcttaggcttctcacagctgacgtggcacaaacccaatggtgaaggaacttca- 22853577  T
Q  156 ctcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactcaaccatttcatt 238  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| | | |||| |||||||||| || |||| |||||||||    
T  22853578 ctcgccctggcgaatgaaggagctcgcgaggcgagttgatgcagaattaaaattttataaatagctcattcaatcatttcatt 22853660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 238
Target Start/End: Complemental strand, 37026674 - 37026493
Alignment:
Q  58 aactcgccatggcgagtggaatg-actcgcgaggcgagtaagggcggtttagcct-cttacagctgatgtggcacaaacccaatggggaagaaacttcaa 155  Q
    |||||||||||||||| |||||| ||||||||||||||| ||||||| |||| || || |||||||| |||||||||||||||||| |||| |||| ||     
T  37026674 aactcgccatggcgag-ggaatgtactcgcgaggcgagttagggcggcttaggcttctcacagctgacgtggcacaaacccaatggtgaaggaactgca- 37026577  T
Q  156 ctcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaa-ttctataaatagcccactcaaccatttcatt 238  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||| | |||| ||||||||||||| || |||| |||||||||    
T  37026576 ctcgccctggcgaatgaaggagctcgcgaggcgagttgatacagaattagaatttctataaatagctcattcaatcatttcatt 37026493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 238
Target Start/End: Complemental strand, 39433855 - 39433675
Alignment:
Q  58 aactcgccatggcgagtggaatg-actcgcgaggcgagtaagggcggtttagcct-cttacagctgatgtggcacaaacccaatggggaagaaacttcaa 155  Q
    ||||||||||||| || |||||| ||||||||||||||| ||||||| |||| || || |||||||| |||||||||||| ||||| |||| ||||| |     
T  39433855 aactcgccatggctag-ggaatgtactcgcgaggcgagttagggcggcttaggcttctcacagctgacgtggcacaaacctaatggtgaaggaacttta- 39433758  T
Q  156 ctcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactcaaccatttcatt 238  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||| | |||| |||||| ||||| || |||| |||||||||    
T  39433757 ctcgccttggcgaatgaaggagctcgcgaggcgagttgatacagaattagaagtctatatatagctcattcaatcatttcatt 39433675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 1947980 - 1948087
Alignment:
Q  129 acaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactcaa 228  Q
    ||||||||||||| |||| ||| |||||||||||||||||||||| |||||| ||||| ||||| ||||||| ||||||| |||||||||| ||||||||    
T  1947980 acaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcacgaggtgagttcatgcagaatcagaatactataaatagaccactcaa 1948079  T
Q  229 ccatttca 236  Q
    ||||||||    
T  1948080 ccatttca 1948087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 222
Target Start/End: Original strand, 33849904 - 33850069
Alignment:
Q  58 aactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtggcacaaacccaatggggaagaaacttcaac 156  Q
    |||||||||||||||||| |   ||||||||||||||| |||||||  ||| ||| | |||  ||| |||||||||||||| ||| |||| ||||| |||    
T  33849904 aactcgccatggcgagtgcatgtactcgcgaggcgagttagggcggcctagactcctcacaaatgacgtggcacaaacccactggtgaaggaacttaaac 33850003  T
Q  157 tcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaa-ttctataaatagccc 222  Q
    ||||||||| ||||||| |||||||||||||||| |||  |||| |||||| || ||||||||||||    
T  33850004 tcgccatggagaatgaaggagctcgcgaggcgaggtgaatcaga-tcagaatttatataaatagccc 33850069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 15925164 - 15925097
Alignment:
Q  5 gagcagcagagatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcga 72  Q
    ||||| || |||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||    
T  15925164 gagcatcaaagatccttcgccaccaacacgcaatggcgagtgaaaggcgagcgaactcgccatggcga 15925097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 6020091 - 6020132
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgag 55  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  6020091 agatccttcgccaccaactcgcaatggctagtggaaggcgag 6020132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 45434413 - 45434369
Alignment:
Q  178 ctcgcgaggcgagttgatgcagagtcagaattctataaatagccc 222  Q
    ||||||||||||||| ||||||| | |||||||||||||||||||    
T  45434413 ctcgcgaggcgagtttatgcagattaagaattctataaatagccc 45434369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 36424950 - 36425182
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36424950 agatctttcgccaccaactcgcaatggcgagtggaaggcgagaaaactcgccatggcgagtggaatgactcgcgaggcgagttagggcggtttagcctct 36425049  T
Q  114 tacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctat 213  Q
     |||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36425050 cacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtat 36425149  T
Q  214 aaatagcccactcaaccatttcattgagatata 246  Q
    ||||||||||||||||||||||||||| |||||    
T  36425150 aaatagcccactcaaccatttcattgatatata 36425182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 36020965 - 36021182
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  36020965 cgccaccaactcgcaatggcgagtggaaggcgagcttactcgccatggcgagtggaatgactcgcgaggcgagtgaaggcggtttagcctcttacagctg 36021064  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36021065 acgtggcacaaacccaatggcgaaggaacctcaactcgccatggcaaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtataaatagcc 36021164  T
Q  222 cactcaaccatttcattg 239  Q
    ||||||||||||||||||    
T  36021165 cactcaaccatttcattg 36021182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 6463793 - 6464007
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  6463793 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 6463892  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  6463893 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 6463992  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  6463993 cactcaaccatttca 6464007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 7312352 - 7312138
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  7312352 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 7312253  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  7312252 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 7312153  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  7312152 cactcaaccatttca 7312138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 8012537 - 8012751
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  8012537 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 8012636  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  8012637 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcaaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 8012736  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  8012737 cactcaaccatttca 8012751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 36004701 - 36004915
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||| ||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  36004701 cgccaccaactcgcaatgacgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 36004800  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  36004801 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 36004900  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  36004901 cactcaaccatttca 36004915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 36076970 - 36076756
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  36076970 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 36076871  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  36076870 acgtggcacaaacccaatgaggaagaaacttcaactcgccatggtgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 36076771  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  36076770 cactcaaccatttca 36076756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 16709898 - 16710113
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggttta-gcctcttacagct 120  Q
    |||||||||||||||||||||||| |||||||||     ||||| ||||||| | ||  ||||||||||||||| ||||||||||| || ||| |  |||    
T  16709898 cgccaccaactcgcaatggcgagtagaaggcgagtttgttcgccgtggcgagggaaagtactcgcgaggcgagttagggcggtttaagcttctcattgct 16709997  T
Q  121 gatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagc 220  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  ||||| | |||||||||||||||||||    
T  16709998 gacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagtgaatgcatactcagaattctataaatagc 16710097  T
Q  221 ccactcaaccatttca 236  Q
    ||||||||||||||||    
T  16710098 ccactcaaccatttca 16710113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 11357467 - 11357615
Alignment:
Q  88 aggcgagtaagggcggtttagcctcttacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggc 187  Q
    |||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||  ||||||||||||    
T  11357467 aggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaagtagctcgcgaggc 11357566  T
Q  188 gagttgatgcagagtcagaattctataaatagcccactcaaccatttca 236  Q
    ||||  ||||||| ||||||||||||||||||| |||||||||||||||    
T  11357567 gagtgaatgcagactcagaattctataaatagctcactcaaccatttca 11357615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 1239207 - 1238993
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagct 120  Q
    ||||||||||||||||||| |||| ||||||||| |   ||||||||||||||| ||  ||||||||||||||| | |||||||||  || || || | |    
T  1239207 cgccaccaactcgcaatggtgagtagaaggcgagtatgttcgccatggcgagtgaaagtactcgcgaggcgagttaaggcggtttaagcttttcactgat 1239108  T
Q  121 gatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagc 220  Q
    || |||||||||||||||||| |||| ||||||||||||||||||||||||||  |||||||||||||||| ||  |||| | |||| ||||||||||||    
T  1239107 gacgtggcacaaacccaatggtgaaggaacttcaactcgccatggcgaatgaagaagctcgcgaggcgagtagacacagatttagaactctataaatagc 1239008  T
Q  221 ccactcaaccatttc 235  Q
    ||| |||| ||||||    
T  1239007 ccattcaatcatttc 1238993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 200
Target Start/End: Complemental strand, 12769856 - 12769713
Alignment:
Q  58 aactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttag-cctcttacagctgatgtggcacaaacccaatggggaagaaacttcaac 156  Q
    ||||||| |||||||||| ||  ||||||||||||||| |||| ||||||| ||||| |||| ||| |||||||||||||||||| |||| |||||||||    
T  12769856 aactcgcaatggcgagtgaaagtactcgcgaggcgagttagggtggtttaggcctctcacagatgacgtggcacaaacccaatggtgaaggaacttcaac 12769757  T
Q  157 tcgccatggcgaatgaatgagctcgcgaggcgagttgatgcaga 200  Q
    ||||||||||||||||| |||||||||||| |||| ||||||||    
T  12769756 tcgccatggcgaatgaaggagctcgcgaggtgagtggatgcaga 12769713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 15013348 - 15013184
Alignment:
Q  58 aactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtggcacaaacccaatggggaagaaacttcaac 156  Q
    |||| ||||||||||||| |   ||| ||||||||||| |||||||| ||| ||| | |||| ||| |||||||||||||| ||| |||| || || |||    
T  15013348 aacttgccatggcgagtgcatgtacttgcgaggcgagttagggcggtctagactcctcacagatgacgtggcacaaacccactggtgaaggaatttaaac 15013249  T
Q  157 tcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaa-ttctataaatagcc 221  Q
    ||||||||||||||||| |||||||||||||||||||| ||||| |||||| || |||||||||||    
T  15013248 tcgccatggcgaatgaaggagctcgcgaggcgagttgaagcaga-tcagaatttatataaatagcc 15013184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 239
Target Start/End: Original strand, 45067692 - 45067871
Alignment:
Q  61 tcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcct-cttacagctgatgtggcacaaacccaatggggaagaaacttcaactcg 159  Q
    ||||||||||||||| | | ||||||||||||||| |||||||  ||  || || |  | ||| ||||| |||||  ||||| |||||||| ||||||||    
T  45067692 tcgccatggcgagtgaatttactcgcgaggcgagttagggcggcctaaacttctcaagggtgacgtggctcaaacttaatggtgaagaaacatcaactcg 45067791  T
Q  160 ccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactcaaccatttcattg 239  Q
    |||||||||||| |    ||||||||||||||||||| ||| | |||||||||||||||||||  | || ||||||||||    
T  45067792 ccatggcgaatggagttactcgcgaggcgagttgatgtagattaagaattctataaatagcccttttaatcatttcattg 45067871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 11357440 - 11357473
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgag 55  Q
    |||||||||||||||||||| |||||||||||||    
T  11357440 cgccaccaactcgcaatggcaagtggaaggcgag 11357473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 25893868 - 25894100
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25893868 agatctttcgccaccaactcgcaatggcgagtggaaggcgagaaaactcgccatggcgagtggaatgactcgcgaggcgagttagggcggtttagcctct 25893967  T
Q  114 tacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctat 213  Q
     |||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25893968 cacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtat 25894067  T
Q  214 aaatagcccactcaaccatttcattgagatata 246  Q
    ||||||||||||||||||||||||||| |||||    
T  25894068 aaatagcccactcaaccatttcattgatatata 25894100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 40957844 - 40958062
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||    
T  40957844 cgccaccaactcacaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagctagggcggtttagcctctcacagctg 40957943  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40957944 acgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcaaaattctataaatagcc 40958043  T
Q  222 cactcaaccatttcattga 240  Q
    |||||||||||||||||||    
T  40958044 cactcaaccatttcattga 40958062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 2958865 - 2958651
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  2958865 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccgtggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 2958766  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  2958765 acgtggcacaaacccaatggggaagaaacttcaactcgccttggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 2958666  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  2958665 cactcaaccatttca 2958651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 2967334 - 2967120
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  2967334 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccgtggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 2967235  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  2967234 acgtggcacaaacccaatggggaagaaacttcaactcgccttggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 2967135  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  2967134 cactcaaccatttca 2967120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 29974964 - 29974750
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  29974964 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccgtggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 29974865  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  29974864 acgtggcacaaacccaatggggaagaaacttcaactcgccttggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 29974765  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  29974764 cactcaaccatttca 29974750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 29981467 - 29981253
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  29981467 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccgtggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 29981368  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  29981367 acgtggcacaaacccaatggggaagaaacttcaactcgccttggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 29981268  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  29981267 cactcaaccatttca 29981253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 30021678 - 30021892
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  30021678 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccgtggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 30021777  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  30021778 acgtggcacaaacccaatggggaagaaacttcaactcgccttggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 30021877  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  30021878 cactcaaccatttca 30021892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 29413888 - 29414114
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |     ||||||||||||||| ||||||||||| | |||    
T  29413888 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgaacgtgtctactcgcgaggcgagtgagggcggtttaac-tct 29413986  T
Q  114 t-acagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattcta 212  Q
    | |||| ||| |||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||    
T  29413987 tcacagatgacgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgagtggatgcagaatcagaattcta 29414086  T
Q  213 taaatagcccactcaaccatttcattga 240  Q
    ||||||||||||||||||||||||||||    
T  29414087 taaatagcccactcaaccatttcattga 29414114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 34356482 - 34356696
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||| ||||||| |||||||||     ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |  ||||    
T  34356482 cgccaccaactcgcaacggcgagtagaaggcgagtgtgttcgccatggcgagtggaatgactcgcgaggcgagtaaaggcggtttagcctctcaatgctg 34356581  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | ||||| ||||||| ||||||||||||    
T  34356582 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagttaaggcagactcagaatcctataaatagcc 34356681  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  34356682 cactcaaccatttca 34356696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 34358273 - 34358487
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||| ||||||| |||||||||     ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |  ||||    
T  34358273 cgccaccaactcgcaacggcgagtagaaggcgagtgtgttcgccatggcgagtggaatgactcgcgaggcgagtaaaggcggtttagcctctcaatgctg 34358372  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||| | ||||| ||||||| ||||||||||||    
T  34358373 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagcccgcgaggcgagttaaggcagactcagaatcctataaatagcc 34358472  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  34358473 cactcaaccatttca 34358487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 5877228 - 5876995
Alignment:
Q  5 gagcagcagagatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggt 104  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||     ||||||||||||||| ||||||||    
T  5877228 gagcatcaaagatccttcgccaccaactcgcaatggcgagtggaaggcgagcgaactcgccatggcgaatgtgtctactcgcgaggcgagttagggcggt 5877129  T
Q  105 ttagcctctt-acagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtc 203  Q
    ||| | |||| |||| |||  ||||||||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  5877128 ttaac-tcttcacagatgacatggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgagttgatgcagaatc 5877030  T
Q  204 agaattctataaat-agcccactcaaccatttcat 237  Q
    |||||||||||||| ||||||||||||||||||||    
T  5877029 agaattctataaataagcccactcaaccatttcat 5876995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 22360973 - 22360738
Alignment:
Q  5 gagcagcagagatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggt 104  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||     ||||||||||||||| ||||||||    
T  22360973 gagcatcaaagatccttcgccaccaactcgcaatggcgagtggaaggcgagagaactcgccatggcgaatgtgtctactcgcgaggcgagttagggcggt 22360874  T
Q  105 ttagcctctt-acagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtc 203  Q
    ||| | |||| |||  ||| |||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |||| ||    
T  22360873 ttaac-tcttcacatatgacgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgagttgatacagaatc 22360775  T
Q  204 agaattctataaatagcccactcaaccatttcattga 240  Q
    ||||||||||||||||| |||||||||||||||||||    
T  22360774 agaattctataaatagctcactcaaccatttcattga 22360738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 22314839 - 22314604
Alignment:
Q  5 gagcagcagagatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggt 104  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| | ||     ||||||||||||||| ||||||||    
T  22314839 gagcatcaaagatccttcgccaccaactcgtaatggcgagtggaaggcgagagaactcgccatggcaaatgtgtgtactcgcgaggcgagttagggcggt 22314740  T
Q  105 ttagcctctt-acagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtc 203  Q
    ||| | |||| |||| |||  ||||||||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||| |||||||| || | ||    
T  22314739 ttaac-tcttcacagatgacttggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggtgagttgatacaaaatc 22314641  T
Q  204 agaattctataaatagcccactcaaccatttcattga 240  Q
    |||||||||||||||||||||||||||||||||||||    
T  22314640 agaattctataaatagcccactcaaccatttcattga 22314604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 42151805 - 42151590
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtg 126  Q
    ||||||||| |||| ||||||||||||||| ||||||||||| || ||||   ||||||||||||||| ||||||||||| | |||| |||| ||| |||    
T  42151805 caactcgca-tggcaagtggaaggcgagcatactcgccatggtgaatggatgtactcgcgaggcgagtgagggcggtttaac-tcttcacagatgacgtg 42151708  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactc 226  Q
    ||||||||||||||| |||| ||| ||||||||||||||||| |||| ||||||||||||||||| ||| |||| |||||||||||||||||| ||||||    
T  42151707 gcacaaacccaatggtgaaggaacctcaactcgccatggcgactgaaggagctcgcgaggcgagtggatacagaatcagaattctataaatagtccactc 42151608  T
Q  227 aaccatttcattgagata 244  Q
    ||||||||||||||||||    
T  42151607 aaccatttcattgagata 42151590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 4974560 - 4974346
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggttta-gcctcttacagct 120  Q
    |||||||||||||||||||||||| |||||||||     || |||||||||  | ||  ||||||||||||||| ||||||||||| || ||| || | |    
T  4974560 cgccaccaactcgcaatggcgagtagaaggcgagtttgttcaccatggcgaaggaaagtactcgcgaggcgagttagggcggtttaagcttctcactgat 4974461  T
Q  121 gatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagc 220  Q
    || ||||||||||||||||||  ||| |||||||||| ||||||||||||||| ||||||||||||||||| ||| |||| | |||||| ||||||||||    
T  4974460 gacgtggcacaaacccaatggtaaaggaacttcaacttgccatggcgaatgaaggagctcgcgaggcgagtggatacagatttagaattttataaatagc 4974361  T
Q  221 ccactcaaccatttc 235  Q
    ||| |||| ||||||    
T  4974360 ccattcaatcatttc 4974346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 239
Target Start/End: Original strand, 12505042 - 12505223
Alignment:
Q  58 aactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtggcacaaacccaatggggaagaaacttcaac 156  Q
    ||||||| ||||||| || | | ||||||||||||||| |||||||  ||  ||| | | || ||||||||| |||||||| ||| |||| ||| ||| |    
T  12505042 aactcgcaatggcgaatgcatttactcgcgaggcgagttagggcggcctaaactcctcaaaggtgatgtggctcaaacccactggtgaagtaacctca-c 12505140  T
Q  157 tcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactcaaccatttcattg 239  Q
    ||||||| |||||||||    ||||||||||||||||||| | | |  |||||||||||||||||||||  | ||||||||||    
T  12505141 tcgccattgcgaatgaagttactcgcgaggcgagttgatgaataatgggaattctataaatagcccacttgatcatttcattg 12505223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 2439778 - 2439580
Alignment:
Q  23 gccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctg 121  Q
    ||||||||||||||| |||||     |||||||||| ||||| |||||||||| ||| ||||||||||| ||| ||||||   ||  ||| | | || ||    
T  2439778 gccaccaactcgcaaaggcgaaccagaggcgagcaa-ctcgcaatggcgagtgaaattactcgcgaggcaagttagggcgccctaaactcctcagaggtg 2439680  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtca-gaattctataaatagc 220  Q
    | ||||| |||||  ||||| |||||||| ||||||| |||||||||||| |    ||||||||||||||||||||| | ||| ||||||||||||||||    
T  2439679 acgtggctcaaacttaatggtgaagaaacatcaactcaccatggcgaatggagttactcgcgaggcgagttgatgca-aatcaggaattctataaatagc 2439581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 30579543 - 30579594
Alignment:
Q  117 agctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcga 168  Q
    |||||| |||||| ||||||| ||| |||||||| |||||||||||||||||    
T  30579543 agctgacgtggcagaaacccactggtgaagaaacatcaactcgccatggcga 30579594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 9334414 - 9334488
Alignment:
Q  21 tcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagt 95  Q
    |||||||||||  || |||||||||  ||||||||| |||| |||||||||||   ||| |||||||||||||||    
T  9334414 tcgccaccaaccggccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagt 9334488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 30579396 - 30579448
Alignment:
Q  21 tcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgag 73  Q
    ||||| |||||| |||| ||||||||||||||||| || ||||| ||||||||    
T  30579396 tcgcccccaacttgcaacggcgagtggaaggcgagaaacctcgcaatggcgag 30579448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 4737600 - 4737823
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4737600 agatccttcgccaccaactcgcaatggctagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagttagggcggtttagcctct 4737699  T
Q  114 tacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctat 213  Q
     |||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4737700 cacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattatat 4737799  T
Q  214 aaatagcccactcaaccatttcat 237  Q
    ||||||||||||||||||||||||    
T  4737800 aaatagcccactcaaccatttcat 4737823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 32327710 - 32327934
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||    
T  32327710 cgccaccaactcgcaatggcgagtggaaggcgagcttactcgccatggcgagtagaatgactcgcgaggcgagtgaaggcggtttagcctcttacagctg 32327809  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32327810 acgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtataaatagcc 32327909  T
Q  222 cactcaaccatttcattgagatata 246  Q
    |||||||||||||||||| ||||||    
T  32327910 cactcaaccatttcattgggatata 32327934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 7061732 - 7061948
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |||||||    
T  7061732 cgccaccaactcgcaatggcgagtggaaggcgagcttactcgccatggcgagtggaaggactcgcgaggcgagtgaaggcggtttagcctctcacagctg 7061831  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  7061832 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 7061931  T
Q  222 cactcaaccatttcatt 238  Q
    ||||||| |||||||||    
T  7061932 cactcaatcatttcatt 7061948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 238
Target Start/End: Original strand, 7068918 - 7069134
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |||||||    
T  7068918 cgccaccaactcgcaatggcgagtggaaggcgagcttactcgccatggcgagtggaaggactcgcgaggcgagtgaaggcggtttagcctctcacagctg 7069017  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  7069018 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 7069117  T
Q  222 cactcaaccatttcatt 238  Q
    ||||||| |||||||||    
T  7069118 cactcaatcatttcatt 7069134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 34710786 - 34710993
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||    
T  34710786 cgccaccaacttgcaatggcgagtggaaggcgagcttactcgccatggcgagtggaatgactcgcgaggcgagtgaaggcggtttagcctctcacagctg 34710885  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34710886 acgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 34710985  T
Q  222 cactcaac 229  Q
    ||||||||    
T  34710986 cactcaac 34710993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 22 - 238
Target Start/End: Complemental strand, 4187690 - 4187474
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  4187690 cgccaccaactcgcaatggcgagtggaaggcgagcttactcgccatggcgagtggaatgactcgcgaggcgagttagggcggtttagcctctcacagctg 4187591  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| |||||||||||||||||| ||||||| ||||||||||||||||||    |||| ||||||||||||||||||||    
T  4187590 acgtggcacaaacccaatggcgaaggaacttcaactcgccatggtgaatgaaggagctcgcgaggcgagttaggacagaatcagaattctataaatagcc 4187491  T
Q  222 cactcaaccatttcatt 238  Q
    |||||||||||||||||    
T  4187490 cactcaaccatttcatt 4187474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 4668617 - 4668806
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  4668617 agatccttcgccaccaactcgcaatggctagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcaaggcgagttagggcggtttagcctct 4668716  T
Q  114 tacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtc 203  Q
     |||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4668717 cacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtc 4668806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 1427640 - 1427854
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  1427640 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 1427739  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  1427740 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 1427839  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  1427840 cactcaaccatttca 1427854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 4019452 - 4019666
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  4019452 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 4019551  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  4019552 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 4019651  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  4019652 cactcaaccatttca 4019666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 4025878 - 4026092
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  4025878 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 4025977  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  4025978 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 4026077  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  4026078 cactcaaccatttca 4026092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 4717757 - 4717971
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  4717757 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 4717856  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  4717857 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 4717956  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  4717957 cactcaaccatttca 4717971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 31128516 - 31128738
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    ||||||||||||| ||||||||||  ||||||||     ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |  ||||    
T  31128516 cgccaccaactcggaatggcgagtaaaaggcgagtctgttcgccatggcgagtggaatgactcgcgaggcgagtaaaggcggtttagcctctcaatgctg 31128615  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  31128616 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaaggaagtagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 31128715  T
Q  222 cactcaaccatttcattgagata 244  Q
    ||||||||||||||||| |||||    
T  31128716 cactcaaccatttcattaagata 31128738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 58 - 250
Target Start/End: Complemental strand, 31548864 - 31548672
Alignment:
Q  58 aactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctgatgtggcacaaacccaatggggaagaaacttcaact 157  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||| ||| ||||||    
T  31548864 aactcgcaatggcgagtggaatgactcgcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaact 31548765  T
Q  158 cgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactcaaccatttcattgagatatatagt 250  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  31548764 cgccatggcgaatgaatgagcccgcgaggcgagttgatgcagagtcagaattgtataaatagcccactcaaccatttcattgagatacatagt 31548672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 34649805 - 34649591
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  34649805 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 34649706  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  34649705 acgtggcacaaacccaatggggaagaaacttcaactcaccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 34649606  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  34649605 cactcaaccatttca 34649591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 34656256 - 34656042
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  34656256 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 34656157  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  34656156 acgtggcacaaacccaatgggaaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 34656057  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  34656056 cactcaaccatttca 34656042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 9863989 - 9864208
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggttta-gcctcttacagct 120  Q
    |||||||||||||||||||||||| |||||||||     ||||||||||||| | ||  ||||||||||||||| ||||||||||| || ||| || |||    
T  9863989 cgccaccaactcgcaatggcgagtagaaggcgagtttgttcgccatggcgagggaaagtactcgcgaggcgagttagggcggtttaagcttctcactgct 9864088  T
Q  121 gatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagc 220  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||    
T  9864089 gacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaaggagctcgcgaggcgagtagatgcagaatcagaattctataaatagc 9864188  T
Q  221 ccactcaaccatttcattga 240  Q
    ||||||||||||||||||||    
T  9864189 ccactcaaccatttcattga 9864208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 13671044 - 13671262
Alignment:
Q  24 ccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggttta-gcctcttacagctga 122  Q
    |||||||||||||||||||||| ||||| |||     ||||||||||||||| ||  ||||||||||||||| ||||||||||| || ||| |  | |||    
T  13671044 ccaccaactcgcaatggcgagtagaaggtgagtttgttcgccatggcgagtgcaagtactcgcgaggcgagttagggcggtttaagcttctcagtgatga 13671143  T
Q  123 tgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagccc 222  Q
     |||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||||| ||||||||| |||||||| | ||||||||||||||||| |    
T  13671144 cgtggcacaaacccaatggtgaaggaacttcaactcgccatgacgaatgaaggagctcgggaggcgagtggatgcagatttagaattctataaatagctc 13671243  T
Q  223 actcaaccatttcattgag 241  Q
    |||||| ||||||| ||||    
T  13671244 actcaatcatttcaatgag 13671262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 21261800 - 21262014
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcct-cttacagct 120  Q
    |||||||||||| ||||||||||| ||||||||| |   ||||||||||||||||||  ||||||||||||||| |||||||||||  || || || | |    
T  21261800 cgccaccaactcacaatggcgagtagaaggcgagtatgttcgccatggcgagtggaagtactcgcgaggcgagttagggcggtttaaacttctcactgat 21261899  T
Q  121 gatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagc 220  Q
    || |||||| ||||||||||| |||| |||||||  ||||||||||||||||| |||||||||||||| || ||| |||| | |||| ||||||||||||    
T  21261900 gacgtggcataaacccaatggtgaaggaacttcatttcgccatggcgaatgaaggagctcgcgaggcgggtggatacagatttagaaatctataaatagc 21261999  T
Q  221 ccactcaaccatttc 235  Q
    ||| |||| ||||||    
T  21262000 ccattcaatcatttc 21262014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 27670993 - 27670819
Alignment:
Q  64 ccatggcgagtggaatg-actcgcgaggcgagtaagggcggtttagcct-cttacagctgatgtggcacaaacccaatggggaagaaacttcaactcgcc 161  Q
    |||||||||| |||||| ||||||||||||||| ||||||| |||| || || || ||||| |||||||||||||||||| |||| ||||||| ||||||    
T  27670993 ccatggcgag-ggaatgtactcgcgaggcgagttagggcggcttaggcttctcacggctgacgtggcacaaacccaatggtgaaggaacttca-ctcgcc 27670896  T
Q  162 atggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactcaaccatttcatt 238  Q
     ||||||||||| ||||||||||| ||| |||||||||| | ||||||||||||||||| || |||| |||||||||    
T  27670895 ctggcgaatgaaggagctcgcgagacgatttgatgcagaattagaattctataaatagctcattcaatcatttcatt 27670819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 1166724 - 1166892
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcct-cttacagctgatgtg 126  Q
    |||||||||| ||||| |||||||||||| ||||||| |||| ||||| | | ||||||||||||||| ||||||| | |  || || | || ||| |||    
T  1166724 caactcgcaaaggcgaatggaaggcgagc-aactcgcaatggtgagtgcatttactcgcgaggcgagttagggcggctaaaactcctcagaggtgacgtg 1166822  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatg 196  Q
     |||||||||| ||| |||||||| ||||||||||| || |||||||    |||||||||||||||||||    
T  1166823 tcacaaacccactggtgaagaaacctcaactcgccaaggtgaatgaagctactcgcgaggcgagttgatg 1166892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 31548879 - 31548844
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaa 49  Q
    ||||||||||||||||||||||||||||||||||||    
T  31548879 agatccttcgccaccaactcgcaatggcgagtggaa 31548844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 14121788 - 14121896
Alignment:
Q  60 ctcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctgatgtggcacaaacccaatggggaagaaacttcaactcg 159  Q
    ||||||||||||||   ||  ||||||||||||||  | |||||  || ||||||  |||||| |||||| |||||||  ||||||||||  || |||||    
T  14121788 ctcgccatggcgagcaaaactactcgcgaggcgagctaaggcggcctaacctcttcaagctgacgtggcagaaacccataggggaagaaagctcgactcg 14121887  T
Q  160 ccatggcga 168  Q
    |||||||||    
T  14121888 ccatggcga 14121896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 22 - 246
Target Start/End: Complemental strand, 43268853 - 43268629
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  43268853 cgccaccaactcgcaatggcgagtggaaggcgagcttactcgccatggcgagtggaatgactcgcgaggcgagtgaaggcggtttagcctcttacagctg 43268754  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43268753 acgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgattgaatgagctcgcgaggcgagttgatgcagagtcagaattgtataaatagcc 43268654  T
Q  222 cactcaaccatttcattgagatata 246  Q
    |||||||||||||||||| ||||||    
T  43268653 cactcaaccatttcattgggatata 43268629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 2158616 - 2158402
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  2158616 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 2158517  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  2158516 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 2158417  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  2158416 cactcaaccatttca 2158402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 2165032 - 2164818
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  2165032 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 2164933  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  2164932 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 2164833  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  2164832 cactcaaccatttca 2164818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 12951803 - 12951589
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  12951803 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 12951704  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  12951703 acgtggcacaaacccaatggggaagaaacttcaactcgccatgacgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 12951604  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  12951603 cactcaaccatttca 12951589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 34840473 - 34840687
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  34840473 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccgtggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 34840572  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  34840573 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 34840672  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  34840673 cactcaaccatttca 34840687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 244
Target Start/End: Original strand, 36781411 - 36781633
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| ||   | ||||||||||||||| ||||||||||| ||||| |||||||    
T  36781411 cgccaccaactcgcaatggcgagtggaaggcgagcccactcgccatggcgaatgattttactcgcgaggcgagttagggcggtttaccctctcacagctg 36781510  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| |||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  36781511 acgtggcacaaacccaatggcgaaggaacctcaactcgccctggcgaatgaaggagctcgcgaggcgagtagatgcagaatcagaattctataaatagcc 36781610  T
Q  222 cactcaaccatttcattgagata 244  Q
    |||||||||||||||||||||||    
T  36781611 cactcaaccatttcattgagata 36781633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 45012988 - 45012774
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |  ||||    
T  45012988 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggggagtaagggcggtttagcctctaaatgctg 45012889  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  45012888 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 45012789  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  45012788 cactcaaccatttca 45012774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 13901190 - 13901409
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||| ||||| ||||||||||  ||||||||||||||||||||||||||||||||||||| | |||||||||||| || |||||||    
T  13901190 cgccaccaactcgcaatgacgagtagaaggcgagcttactcgccatggcgagtggaatgactcgcgaggcgagtgaaggcggtttagcccctcacagctg 13901289  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||| |||||||||||||||||| |||||||  |||||     ||||||||||||||||||||||||||||||||||||    
T  13901290 acgtggcacaaacccaatggggaagtaacttcaactcgccatggtgaatgaagtagctc-----gcgagttgatgcagagtcagaattctataaatagcc 13901384  T
Q  222 cactcaaccatttcattgagatata 246  Q
    |||||||||||||||||| ||||||    
T  13901385 cactcaaccatttcattgggatata 13901409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 15853543 - 15853325
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||| || ||   | ||||||||||||||| ||||||||||||||||| |||||||    
T  15853543 cgccaccaactcgcaatggcgagtggaaggcgagcccactcgccatggtgaatgattttactcgcgaggcgagttagggcggtttagcctctcacagctg 15853444  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| |||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  15853443 acgtggcacaaacccaatggcgaaggaacctcaactcgccctggcgaatgaaggagctcgcgaggcgagtagatgcagaatcagaattctataaatagcc 15853344  T
Q  222 cactcaaccatttcattga 240  Q
    |||||||||||||||||||    
T  15853343 cactcaaccatttcattga 15853325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 34834029 - 34834243
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    ||||||||||| |||||||||||| ||||||||||  ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  34834029 cgccaccaactagcaatggcgagtagaaggcgagcttactcgccgtggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 34834128  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  34834129 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 34834228  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  34834229 cactcaaccatttca 34834243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 42930609 - 42930826
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| ||   | ||||||||||||||| ||||||||| ||||||| |||||||    
T  42930609 cgccaccaactcgcaatggcgagtggaaggcgagcccactcgccatggcgaatgattttactcgcgaggcgagttagggcggtt-agcctctcacagctg 42930707  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| |||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  42930708 acgtggcacaaacccaatggcgaaggaacctcaactcgccctggcgaatgaaggagctcgcgaggcgagtagatgcagaatcagaattctataaatagcc 42930807  T
Q  222 cactcaaccatttcattga 240  Q
    |||||||||||||||||||    
T  42930808 cactcaaccatttcattga 42930826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 2020667 - 2020893
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtg-gaatgactcgcgaggcgagtaagggcggtttagcctc 112  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |  | || ||||||||||||||| ||||||||||| | ||    
T  2020667 agatccttcgccaccaactcgcaatggctagtggaaggcgagcgaactcgccatggcgaatatgtat-actcgcgaggcgagttagggcggtttaac-tc 2020764  T
Q  113 tt-acagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattct 211  Q
    || |||| ||| |||||||||||||||||| |||| ||| ||||||||||||| |||||||| ||||||||||||| |||| ||||||| ||||||||||    
T  2020765 ttcacagatgacgtggcacaaacccaatggtgaaggaacctcaactcgccatgacgaatgaaagagctcgcgaggcaagttaatgcagaatcagaattct 2020864  T
Q  212 ataaatagcccactcaaccatttcattga 240  Q
    |||||||||||||||||||||||||||||    
T  2020865 ataaatagcccactcaaccatttcattga 2020893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 88 - 240
Target Start/End: Complemental strand, 29485822 - 29485670
Alignment:
Q  88 aggcgagtaagggcggtttagcctcttacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggc 187  Q
    |||||||| ||||| ||||||||||| |||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||    
T  29485822 aggcgagttagggcagtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggc 29485723  T
Q  188 gagttgatgcagagtcagaattctataaatagcccactcaaccatttcattga 240  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29485722 gagttgatgcagagtcagaattgtataaatagcccactcaaccatttcattga 29485670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 21341167 - 21341384
Alignment:
Q  21 tcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatg-actcgcgaggcgagtaagggcggtttagcctctt-acag 118  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||||||||| || | || ||||||||||||||| ||||||  |||| ||| | ||||    
T  21341167 tcgccaccaactcgca-tggcgagttgaaggcgagccaactcgccatggcgaatg-attgtactcgcgaggcgagttagggcgacttagactcctcacag 21341264  T
Q  119 ctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaata 218  Q
    |||| |||||||||| ||||||| |||| ||| ||||||||||||||||||||||  |||||||||||||| |||||||||| |||||||||||||||||    
T  21341265 ctgacgtggcacaaaaccaatggtgaaggaacctcaactcgccatggcgaatgaagaagctcgcgaggcgaattgatgcagaatcagaattctataaata 21341364  T
Q  219 gcccactcaaccatttcatt 238  Q
    ||||||||||||||||||||    
T  21341365 gcccactcaaccatttcatt 21341384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 28 - 236
Target Start/End: Original strand, 16816572 - 16816779
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtg 126  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| ||||   ||| ||||||||||| |||||||| || | |||| |||| ||| |||    
T  16816572 caactcgca-tggcgagtggaaggcgagcatactcgccatggcgaatggatgtacttgcgaggcgagttagggcggtctaac-tcttcacagatgacgtg 16816669  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactc 226  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||||||||||||    
T  16816670 gcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcacgaggcgagttcatgcagaatcagaattctataaatagcccactc 16816769  T
Q  227 aaccatttca 236  Q
    ||||||||||    
T  16816770 aaccatttca 16816779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 28 - 236
Target Start/End: Original strand, 16855729 - 16855936
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtg 126  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| ||||   ||| ||||||||||| |||||||| || | |||| |||| ||| |||    
T  16855729 caactcgca-tggcgagtggaaggcgagcatactcgccatggcgaatggatgtacttgcgaggcgagttagggcggtctaac-tcttcacagatgacgtg 16855826  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactc 226  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||||||||||||    
T  16855827 gcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcacgaggcgagttcatgcagaatcagaattctataaatagcccactc 16855926  T
Q  227 aaccatttca 236  Q
    ||||||||||    
T  16855927 aaccatttca 16855936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 21067162 - 21067371
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtg 126  Q
    ||||||||| ||||| ||| |||||||||| |||||||||||||| ||||    |||||||||||||| | |||||| ||  ||||| |||||||| |||    
T  21067162 caactcgca-tggcgggtgaaaggcgagcacactcgccatggcgaatggatgtgctcgcgaggcgagttatggcggtctaaactcttcacagctgacgtg 21067260  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactc 226  Q
    ||||||||||||||| |||| |||  ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  21067261 gcacaaacccaatggtgaaggaaccgcaactcgccatggcgaatgaaggagctcgcgaggcgagttgatacagagtcagaattttataaatagcccactc 21067360  T
Q  227 aaccatttcat 237  Q
    |||||||||||    
T  21067361 aaccatttcat 21067371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 11909153 - 11909198
Alignment:
Q  30 actcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtg 75  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  11909153 actcgcaatggcgagtggaaggcgagcaaactcgccatggcaagtg 11909198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 29485857 - 29485816
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgag 55  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  29485857 agatctttcgccaccaactcgcaatggcgagtggaaggcgag 29485816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 33034662 - 33034601
Alignment:
Q  107 agcctcttacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcga 168  Q
    ||||||||  ||||||||||||| ||||| |  ||||||||||  |||||||||||||||||    
T  33034662 agcctcttgaagctgatgtggcagaaacctataggggaagaaagctcaactcgccatggcga 33034601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 8794 - 8605
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  8794 agatccttcgccaccaactcgcaatggctagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcaaggcgagttagggcggtttagcctct 8695  T
Q  114 tacagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtc 203  Q
     |||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8694 cacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtc 8605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 50695 - 50481
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  50695 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 50596  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  50595 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 50496  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  50495 cactcaaccatttca 50481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 71424 - 71228
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtg 126  Q
    ||||||||| |||||||||||||||||||| |||| ||||||| | ||||   ||||||||||||||| || ||| | || | |||| |||| ||| |||    
T  71424 caactcgca-tggcgagtggaaggcgagcatactcaccatggcaaatggatgtactcgcgaggcgagttagcgcgatctaac-tcttcacagatgacgtg 71327  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccact 225  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  71326 gcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgagtgcatgcagaatcagaattctataaatagcccact 71228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 4222 - 4436
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  4222 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 4321  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  4322 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 4421  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  4422 cactcaaccatttca 4436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 45016786 - 45016572
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  45016786 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 45016687  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  45016686 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 45016587  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  45016586 cactcaaccatttca 45016572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 42092901 - 42092687
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  42092901 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccatggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 42092802  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  | ||||| ||||||||||||||| ||||    
T  42092801 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaagagcc 42092702  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  42092701 cactcaaccatttca 42092687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 45023528 - 45023306
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||| ||||||||||||||||||||||||||  |||||||||||||| ||   | ||||||||||||||| ||||||||||||||||| |||||||    
T  45023528 cgccaccagctcgcaatggcgagtggaaggcgagcccactcgccatggcgaatgattttactcgcgaggcgagttagggcggtttagcctctcacagctg 45023429  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||    
T  45023428 acgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgagtagatgcagaatcagaattctataaatagcc 45023329  T
Q  222 cactcaaccatttcattgagata 244  Q
    ||||||||||||||||| |||||    
T  45023328 cactcaaccatttcattcagata 45023306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 28997008 - 28996782
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||     ||||||||||||||| ||||||||||| | |||    
T  28997008 agatccttcgccaccaactcgcaatggcgagtggaaggcgagccaactcgccatgacgaatgtgtctactcgcgaggcgagtgagggcggtttaac-tct 28996910  T
Q  114 t-acagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattcta 212  Q
    | |||| ||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  28996909 tcacagatgacgtggcacaaacccaatggtgaaggaacttcaactcgccatggcgaatgaaggagctcgcgaggcgagttgatgcagaatcagaattcta 28996810  T
Q  213 taaatagcccactcaaccatttcattga 240  Q
    ||||||||||||||||||||||||||||    
T  28996809 taaatagcccactcaaccatttcattga 28996782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 6239649 - 6239435
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    |||||||||||||||||||||||| ||||||||||  ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||    
T  6239649 cgccaccaactcgcaatggcgagtagaaggcgagcttactcgccgtggcgaatggaaggactcgcgaggcgagtaagggcggtttagcctctaaatgctg 6239550  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||  | ||||| ||||||||||||||||||||    
T  6239549 acgtggcacaaacccaatggggaagaaacttcaactcgccttggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatagcc 6239450  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  6239449 cactcaaccatttca 6239435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 29002724 - 29002498
Alignment:
Q  14 agatccttcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||     ||||||||||||||| ||||||||||| | |||    
T  29002724 agatccttcgccaccaactcgcaatggcgagtggaaggcgagccaactcgccatgacgaatgtgtctactcgcgaggcgagtgagggcggtttaac-tct 29002626  T
Q  114 t-acagctgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattcta 212  Q
    | |||| ||| |||||||||||||||||| |||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  29002625 tcacagatgacgtggcacaaacccaatggtgaaggaactccaactcgccatggcgaatgaaggagctcgcgaggcgagttgatgcagaatcagaattcta 29002526  T
Q  213 taaatagcccactcaaccatttcattga 240  Q
    ||||||||||||||||||||||||||||    
T  29002525 taaatagcccactcaaccatttcattga 29002498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 39052535 - 39052749
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    ||||||||||||||| |||||||| |||||||||     ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |  ||||    
T  39052535 cgccaccaactcgcagtggcgagtagaaggcgagtgtgttcgccatggcgagtggaatgactcgcgaggcgagtaaaggcggtttagcctctcaatgctg 39052634  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | ||||| ||||||| ||||||||||||    
T  39052635 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagttaaggcagactcagaatcctataaatagcc 39052734  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  39052735 cactcaaccatttca 39052749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 39058907 - 39059121
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctg 121  Q
    ||||||||||||||| |||||||| |||||||||     ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |  ||||    
T  39058907 cgccaccaactcgcagtggcgagtagaaggcgagtgtgttcgccatggcgagtggaatgactcgcgaggcgagtaaaggcggtttagcctctcaatgctg 39059006  T
Q  122 atgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | ||||| ||||||| ||||||||||||    
T  39059007 acgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagttaaggcagactcagaatcctataaatagcc 39059106  T
Q  222 cactcaaccatttca 236  Q
    |||||||||||||||    
T  39059107 cactcaaccatttca 39059121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 43687625 - 43687410
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggttta-gcctcttacagct 120  Q
    |||||||||||||||||||||||| |||||||||     |||||| |||||| | ||  ||||||||||||||| ||||||||||| || ||| || |||    
T  43687625 cgccaccaactcgcaatggcgagtagaaggcgagtttgttcgccacggcgagggaaagtactcgcgaggcgagttagggcggtttaagcttctcactgct 43687526  T
Q  121 gatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagc 220  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  ||| ||| |||||||||||||||||||    
T  43687525 gacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagtgaatgtagattcagaattctataaatagc 43687426  T
Q  221 ccactcaaccatttca 236  Q
    ||||||||||||||||    
T  43687425 ccactcaaccatttca 43687410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 28 - 236
Target Start/End: Complemental strand, 1175580 - 1175373
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtg 126  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| ||||   ||| ||||||||||| |||||||| || | |||| |||| ||| |||    
T  1175580 caactcgca-tggcgagtggaaggcgagcatactcgccatggcgaatggatgtacttgcgaggcgagttagggcggtctaac-tcttcacagatgacgtg 1175483  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactc 226  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  1175482 gcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgagttcatgcagaatcagaattctataaatagcccactc 1175383  T
Q  227 aaccatttca 236  Q
    ||||||||||    
T  1175382 aaccatttca 1175373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 28 - 236
Target Start/End: Complemental strand, 26622447 - 26622240
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtg 126  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| ||||   |||||||||| |||| |||||||| || | |||| |||| ||| |||    
T  26622447 caactcgca-tggcgagtggaaggcgagcatactcgccatggcgaatggatgtactcgcgaggtgagttagggcggtctaac-tcttcacagatgacgtg 26622350  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactc 226  Q
    ||||||||||||||| |||| ||| ||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  26622349 gcacaaacccaatggtgaaggaacctcaactcaccatggcgaatgaaggagctcgcgaggcgagttcatgcagaatcagaattctataaatagcccactc 26622250  T
Q  227 aaccatttca 236  Q
    ||||||||||    
T  26622249 aaccatttca 26622240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 41304765 - 41304974
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtg 126  Q
    ||||||||| |||||||||||||||||||| ||||||||||| || ||||   |||||||||| |||| ||||||||||| | |||| |||| |||||||    
T  41304765 caactcgca-tggcgagtggaaggcgagcatactcgccatggagaatggatgtactcgcgaggggagttagggcggtttaac-tcttcacagatgatgtg 41304862  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactc 226  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||| ||||||| || |||||||||||||||||||||| ||    
T  41304863 gcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgatttgatgctgaatcagaattctataaatagcccagtc 41304962  T
Q  227 aaccatttcatt 238  Q
    || |||||||||    
T  41304963 aagcatttcatt 41304974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 23761586 - 23761785
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggt-ttagcctcttacagctgatgtg 126  Q
    ||||||||| |||||||||||||| ||||  |||| ||||||||| |||| | ||||||||||||||| |||||||| |||  || | | || ||| |||    
T  23761586 caactcgca-tggcgagtggaaggtgagcttactcaccatggcgaatggatttactcgcgaggcgagttagggcggtcttaagct-tcatagttgacgtg 23761683  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactc 226  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  23761684 gcacaaacccaatggtgaagtaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagtggatgcagagtcaaaattctataaatagcccactc 23761783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 35085992 - 35085775
Alignment:
Q  25 caccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggttta-gcctcttacagctgat 123  Q
    ||||||||||||||||||||| ||||||||| |   |||||||||| |||| ||  ||||||||||||||| |||| |||||| || ||| || | |||     
T  35085992 caccaactcgcaatggcgagtagaaggcgagtatgttcgccatggcaagtgcaagtactcgcgaggcgagttagggtggtttaagcttctcactgatgac 35085893  T
Q  124 gtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagccca 223  Q
    ||||||||||| |||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||| |||||||| | ||||||||||||||||| ||    
T  35085892 gtggcacaaactcaatggtgaaggaactccaactcgccatggcgaatgaaggagctcgcgaggcgagtggatgcagatttagaattctataaatagctca 35085793  T
Q  224 ctcaaccatttcattgag 241  Q
    ||||| ||||||| ||||    
T  35085792 ctcaatcatttcaatgag 35085775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 44242350 - 44242130
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggttta-gcctcttacagct 120  Q
    ||||||||||||||||||||||||  ||||||||     ||||||||||||||| ||  ||||| ||||||||| ||||||||||| || ||| || | |    
T  44242350 cgccaccaactcgcaatggcgagtaaaaggcgagtctgttcgccatggcgagtgcaagtactcgtgaggcgagttagggcggtttaagcttctcactgat 44242251  T
Q  121 gatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagc 220  Q
    || |||||||||||||||||| |||| ||||||||||||||||||||||||||  |||||||||||||||| |||||| | | |||||||||||||||||    
T  44242250 gacgtggcacaaacccaatggtgaaggaacttcaactcgccatggcgaatgaagaagctcgcgaggcgagtggatgcatatttagaattctataaatagc 44242151  T
Q  221 ccactcaaccatttcattgag 241  Q
     ||||||| ||||||| ||||    
T  44242150 tcactcaatcatttcaatgag 44242130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 9870090 - 9869888
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatg-actcgcgaggcgagtaagggcggtttagcctc-ttacagc 119  Q
    |||||||||||||||||||||||| ||||||||   ||||||||||||||| || |||| |||||| |||||||| |||||||||||| ||| ||| ||     
T  9870090 cgccaccaactcgcaatggcgagtagaaggcgactgaactcgccatggcgaatg-aatgtactcgcaaggcgagttagggcggtttagactccttagagg 9869992  T
Q  120 tgatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatag 219  Q
    | | |||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||   |||||| |||||||||    
T  9869991 ttacgtggcacaaaaccaatggtgaagaaacttcaactcgccatggcgaatgaaggagctcgcgaggcgagtagatgcagaacgagaattttataaatag 9869892  T
Q  220 ccca 223  Q
    ||||    
T  9869891 ccca 9869888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 4600522 - 4600302
Alignment:
Q  22 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggttta-gcctcttacagct 120  Q
    |||||||||| ||||||||||||| |||||||||     ||||||||||||||| ||  ||||||||||||||| ||||||||||| || ||| || | |    
T  4600522 cgccaccaacacgcaatggcgagtagaaggcgagtctgttcgccatggcgagtgcaagtactcgcgaggcgagttagggcggtttaagcttctcactgat 4600423  T
Q  121 gatgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagc 220  Q
    ||  ||||||||||||||||  |||| ||||||||||||||||||||||||||  |||||||||||||||| |||| ||| | | |||||||||||||||    
T  4600422 gacatggcacaaacccaatgatgaaggaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagtggatgtagatttataattctataaatagc 4600323  T
Q  221 ccactcaaccatttcattgag 241  Q
     ||||||| || |||| ||||    
T  4600322 tcactcaatcagttcaatgag 4600302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 1115257 - 1115423
Alignment:
Q  58 aactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtggcacaaacccaatggggaagaaacttcaac 156  Q
    |||||||||||||||||| |   ||||||||||||||| |||||||  ||| ||| | |||| ||| |||||||||||||| | | |||| ||||| |||    
T  1115257 aactcgccatggcgagtgcatgtactcgcgaggcgagttagggcggcctagactcctcacagatgacgtggcacaaacccactagtgaaggaacttaaac 1115356  T
Q  157 tcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaa-ttctataaatagccca 223  Q
    ||||||||||||||||| |||||||||||||||||||| ||||| |||||| || |||||||||||||    
T  1115357 tcgccatggcgaatgaaggagctcgcgaggcgagttgaagcaga-tcagaatttatataaatagccca 1115423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 58 - 222
Target Start/End: Complemental strand, 32798680 - 32798516
Alignment:
Q  58 aactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtggcacaaacccaatggggaagaaacttcaac 156  Q
    |||||||||||||||||| |   ||||||||||||||| |||||||  ||  ||| | |||| ||| |||||||||||||||| | |||| ||||||| |    
T  32798680 aactcgccatggcgagtgcatgtactcgcgaggcgagttagggcggcctaaactcctcacagatgacgtggcacaaacccaatcgtgaaggaacttca-c 32798582  T
Q  157 tcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaa-ttctataaatagccc 222  Q
    | ||||| ||||||||| |||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  32798581 ttgccatagcgaatgaaggagctcgcgaggcgagttgaagcaga-tcagaagttctataaatagccc 32798516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 31073322 - 31073133
Alignment:
Q  29 aactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagc-tgatgtgg 127  Q
    |||||||||||||||||| |||| ||||||     | |||||||||| | | ||||||||||||||| |||||||  ||  ||| |  ||  ||| ||||    
T  31073322 aactcgcaatggcgagtgaaaggtgagcaa-----caatggcgagtgaatttactcgcgaggcgagttagggcggcctaaactcctcaagggtgacgtgg 31073228  T
Q  128 cacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagccc 222  Q
    | |||||  ||||| |||||||| |||||||||||||||||||| |    |||| |||||||||||||||||| | |||| ||||||||||||||    
T  31073227 ctcaaacttaatggtgaagaaacatcaactcgccatggcgaatggagttactcgtgaggcgagttgatgcagattaagaaatctataaatagccc 31073133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 44917348 - 44917185
Alignment:
Q  58 aactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctgatgtggcacaaacccaatggggaagaaacttcaact 157  Q
    ||||||| ||||||||||  || || ||||||| |||| ||||||| | | |  |||| || ||||||||||||| |||| ||| |||| ||| ||||||    
T  44917348 aactcgcaatggcgagtgatattacccgcgaggtgagttagggcggctaaactccttagaggtgatgtggcacaatcccactggtgaagtaacctcaact 44917249  T
Q  158 cgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcc 221  Q
    |||||||| |||||||    ||||||||||||||||| |||||   | | ||||||||||||||    
T  44917248 cgccatggagaatgaagttactcgcgaggcgagttgaggcagaacaatacttctataaatagcc 44917185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 5444634 - 5444679
Alignment:
Q  193 gatgcagagtcagaattctataaatagcccactcaaccatttcatt 238  Q
    |||||||| | ||||||||||||||||| ||||||| |||||||||    
T  5444634 gatgcagatttagaattctataaatagctcactcaatcatttcatt 5444679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 28 - 240
Target Start/End: Complemental strand, 2010 - 1799
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctcttacagctgatgtgg 127  Q
    ||||||||| |||||||||||||||||||  |||||||||||||| || | | ||||||||||||||| | |||||||||| |||| |||||||| ||||    
T  2010 caactcgca-tggcgagtggaaggcgagcttactcgccatggcgaatgaatttactcgcgaggcgagttaaggcggtttagtctctaacagctgacgtgg 1912  T
Q  128 cacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactca 227  Q
    |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1911 cacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagtttatgcagagtcagaattctataaatagcccactca 1812  T
Q  228 accatttcattga 240  Q
    |||||||||||||    
T  1811 accatttcattga 1799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 8126 - 8335
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtg 126  Q
    ||||||||| |||||||||||||||||||| ||||||||||| || ||||   |||||||||| |||| ||||||||||| | |||| |||| |||||||    
T  8126 caactcgca-tggcgagtggaaggcgagcatactcgccatggagaatggatgtactcgcgaggggagttagggcggtttaac-tcttcacagatgatgtg 8223  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactc 226  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||| ||||||| || |||||||||||||||||||||| ||    
T  8224 gcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgatttgatgctgaatcagaattctataaatagcccagtc 8323  T
Q  227 aaccatttcatt 238  Q
    || |||||||||    
T  8324 aagcatttcatt 8335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 11380 - 11589
Alignment:
Q  28 caactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctctt-acagctgatgtg 126  Q
    ||||||||| |||||||||||||||||||| | |||||||||||| ||||   |||||| |||| ||| ||||||||||| | |||| |||  ||| |||    
T  11380 caactcgca-tggcgagtggaaggcgagcatagtcgccatggcgaatggatgtactcgcaaggcaagttagggcggtttaac-tcttcacatatgacgtg 11477  T
Q  127 gcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatagcccactc 226  Q
    ||| ||||||| ||| |||| |||  ||||||||||||||||||||| ||| | | |||||||||||||||||| |||||||||||||||||||||||||    
T  11478 gcataaacccactggtgaaggaaccacaactcgccatggcgaatgaaggagtttgtgaggcgagttgatgcagaatcagaattctataaatagcccactc 11577  T
Q  227 aaccatttcatt 238  Q
    ||||||||||||    
T  11578 aaccatttcatt 11589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 199
Target Start/End: Complemental strand, 16117 - 15975
Alignment:
Q  58 aactcgccatggcgagtggaatgactcgcgaggcgagtaagggcggtttagcctc-ttacagctgatgtggcacaaacccaatggggaagaaacttcaac 156  Q
    |||||||||||||||||| |   ||||||||||||||| |||||||  ||| ||| |||||| ||| |||||||||||||| ||| |||| |||||||||    
T  16117 aactcgccatggcgagtgcatgtactcgcgaggcgagttagggcggcctagactccttacagatgacgtggcacaaacccactggtgaaggaacttcaac 16018  T
Q  157 tcgccatggcgaatgaatgagctcgcgaggcgagttgatgcag 199  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  16017 tcgccatggcgaatgaaggagctcgcgaggcgagttgaagcag 15975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 178
Target Start/End: Complemental strand, 3621 - 3501
Alignment:
Q  58 aactcgccatggcgagtggaatg-actcgcgaggcgagtaagggcggtttagcct-cttacagctgatgtggcacaaacccaatggggaagaaacttcaa 155  Q
    ||||| |||||||||| |||||| || |||||||||||| ||||||| |||| || || |||||||| |||||||||||||||||| |||| |||||| |    
T  3621 aactcaccatggcgag-ggaatgtacccgcgaggcgagttagggcggcttaggcttctcacagctgacgtggcacaaacccaatggtgaaggaacttc-a 3524  T
Q  156 ctcgccatggcgaatgaatgagc 178  Q
    |||||| ||||||||||| ||||    
T  3523 ctcgccctggcgaatgaaggagc 3501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 3498 - 3442
Alignment:
Q  163 tggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatag 219  Q
    ||||||||||| |||||||||||||||||||||  ||| | ||||||||||||||||    
T  3498 tggcgaatgaaggagctcgcgaggcgagttgatatagaattagaattctataaatag 3442  T

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Target: scaffold0343; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 3760 - 3710
Alignment:
Q  23 gccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgag 73  Q
    ||||||||||||||||||||||| ||||||||| | | |||||||||||||    
T  3760 gccaccaactcgcaatggcgagtagaaggcgagtacattcgccatggcgag 3710  T

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