View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_57 (Length: 250)
Name: NF3021_low_57
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_57 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 21941181 - 21940944
Alignment:
| Q |
13 |
gagatattgttgaaagacacattgagaagtagtaaacttgatgaactactaaacttttcaggtatgaggccattgaacttattattagataaatctacaa |
112 |
Q |
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| T |
21941181 |
gagatattgttgaaagacacgttgagaagttgtaaacttgatgaactaccaaacttttcagggatgaagccattgaacttattgttagataaatctacaa |
21941082 |
T |
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| Q |
113 |
tttcaagaatatggatatttgcaagctcctcaggtattggacctgtcaaattattttcggataatttgattgtcacaagagcatgacatttcgaaacact |
212 |
Q |
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| T |
21941081 |
tttcaagaatagggatacttgcaagctcctcaggtatttggcctgtcaaattattgtcagataattcgattgtcacaagagcttgacatttcgaaacact |
21940982 |
T |
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| Q |
213 |
ttttgggattgttccatacaagttgtttctacctagat |
250 |
Q |
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| T |
21940981 |
ttttgggattgttccagacaagttgtttctaccaagat |
21940944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 10801135 - 10801367
Alignment:
| Q |
13 |
gagatattgttgaaagacacattgagaagtagtaaacttgatgaactactaaacttttcaggtatgaggccattgaacttattattagataaatctacaa |
112 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10801135 |
gagatattgttgaaagacacgttgagaagttttaaacttgatgaacttccaaacttttcaggtatgaggccattgaaattattattagataaatctacaa |
10801234 |
T |
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| Q |
113 |
tttcaagaatatggatatttgcaagctcctcaggtattggacctgtcaaattattttcggataatttgattgtcacaagagcatgacatttcgaaacact |
212 |
Q |
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| T |
10801235 |
tttcaagaatagggatatatgcaagctcctcaggtatttgacctgtcaaattattgtcagataattcgattatcataagagcttgacatttcgaaacact |
10801334 |
T |
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| Q |
213 |
ttttgggattgttccatacaagttgtttctacc |
245 |
Q |
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| T |
10801335 |
ttttggtattgttccagataagttgtttctacc |
10801367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 10800991 - 10801135
Alignment:
| Q |
13 |
gagatattgttgaaagacacattgagaagtagtaaacttgatgaactactaaacttttcaggtatgaggccattgaacttattattagataaatctacaa |
112 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
10800991 |
gagatattgttgaaagacacattgagaagttataaacttgatgaactaccaaacttttcaggtatgaggccattgagattattgttagataaatctacac |
10801090 |
T |
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| Q |
113 |
tttcaagaatatggatatttgcaagctcctcaggtattggacctg |
157 |
Q |
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| T |
10801091 |
tttcaagaatagggatatctgccagctcctcgggtattgaacctg |
10801135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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