View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_low_61 (Length: 244)

Name: NF3021_low_61
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_low_61
NF3021_low_61
[»] chr3 (15 HSPs)
chr3 (1-229)||(10516831-10517059)
chr3 (1-229)||(11782477-11782705)
chr3 (28-229)||(10499947-10500148)
chr3 (9-229)||(10526710-10526930)
chr3 (38-229)||(10541354-10541545)
chr3 (9-203)||(13343440-13343634)
chr3 (9-209)||(13332255-13332455)
chr3 (9-78)||(10031342-10031411)
chr3 (9-66)||(10662865-10662922)
chr3 (17-66)||(10126275-10126324)
chr3 (17-66)||(10260045-10260094)
chr3 (9-209)||(13170382-13170582)
chr3 (9-68)||(13289016-13289075)
chr3 (28-80)||(11162765-11162817)
chr3 (28-68)||(13160350-13160390)
[»] chr4 (1 HSPs)
chr4 (9-229)||(17853418-17853638)
[»] scaffold0002 (2 HSPs)
scaffold0002 (9-209)||(136406-136606)
scaffold0002 (28-68)||(146598-146638)
[»] chr6 (1 HSPs)
chr6 (28-66)||(31680400-31680438)
[»] chr8 (1 HSPs)
chr8 (9-66)||(11484368-11484425)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10516831 - 10517059
Alignment:
Q  1 cttgataatttactttaccaatcaaacatggctgcagctttggtgggaggtgcgtttctctctgctaccattcaaaccatagcagagaaacttacctcat 100  Q
    |||| ||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10516831 cttgctaacttactttaccaagcaaacatggctgcagctttggttggaggtgcgtttctctctgctaccattcaaaccatagcagagaagcttacctcat 10516930  T
Q  101 cagagtttcgtggtttcataaaaaacacaaagttcaattattcgcaactggctgagttgaaaacaacactgtttgctcttcaagctgtgctggttgatgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10516931 cagagtttcgtggtttcataaaaaacacaaagttcaattattcacaactggctgagttgaaaacaacactgtttgctcttcaagctgtgctggttgatgc 10517030  T
Q  201 agagcagaaacagttcaatgatcttcctg 229  Q
    |||||||||||||||||||||||||||||    
T  10517031 agagcagaaacagttcaatgatcttcctg 10517059  T

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Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 11782705 - 11782477
Alignment:
Q  1 cttgataatttactttaccaatcaaacatggctgcagctttggtgggaggtgcgtttctctctgctaccattcaaaccatagcagagaaacttacctcat 100  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||    
T  11782705 cttgctaatttactttaccaagcaaacatggctgcagctttggtgggaggtgcgtttctctcagctaccattcaaaccatagctgagaagcttacctcat 11782606  T
Q  101 cagagtttcgtggtttcataaaaaacacaaagttcaattattcgcaactggctgagttgaaaacaacactgtttgctcttcaagctgtgctggttgatgc 200  Q
    ||||||||||||||||| |||||||||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11782605 cagagtttcgtggtttcgtaaaaaacacaaagctcaattactcacaactggcagagttgaaaacaacactgtttgctcttcaagctgtgctggttgatgc 11782506  T
Q  201 agagcagaaacagttcaatgatcttcctg 229  Q
    |||||||||||||||||| ||||||||||    
T  11782505 agagcagaaacagttcaaagatcttcctg 11782477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 10499947 - 10500148
Alignment:
Q  28 atggctgcagctttggtgggaggtgcgtttctctctgctaccattcaaaccatagcagagaaacttacctcatcagagtttcgtggtttcataaaaaaca 127  Q
    ||||||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||| || | ||||||||||||||||| ||||||||||||||    
T  10499947 atggctgcagctttggtgggaggcgcatttctttctgctactattcaaaccatagcagagaagctaagctcatcagagtttcgtgttttcataaaaaaca 10500046  T
Q  128 caaagttcaattattcgcaactggctgagttgaaaacaacactgtttgctcttcaagctgtgctggttgatgcagagcagaaacagttcaatgatcttcc 227  Q
    ||||||||||||| |||| | |||| || |||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||| |||||||||    
T  10500047 caaagttcaattactcgctattggcagatttgaaaacaacactttttgctcttcaagctgttctagttgatgcagagcagaaacaattcactgatcttcc 10500146  T
Q  228 tg 229  Q
    ||    
T  10500147 tg 10500148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 10526710 - 10526930
Alignment:
Q  9 tttactttaccaatcaaacatggctgcagctttggtgggaggtgcgtttctctctgctaccattcaaaccatagcagagaaacttacctcatcagagttt 108  Q
    |||||||||||||||| | ||||||||||||||||| | |||||| | |||||| || || | ||||||||||||||| || || | |||||||||||||    
T  10526710 tttactttaccaatcagatatggctgcagctttggtcgcaggtgcatgtctctcagcaactactcaaaccatagcagacaagctaagctcatcagagttt 10526809  T
Q  109 cgtggtttcataaaaaacacaaagttcaattattcgcaactggctgagttgaaaacaacactgtttgctcttcaagctgtgctggttgatgcagagcaga 208  Q
    ||||||||||| | |||||| | ||||||||| || |  ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10526810 cgtggtttcatcagaaacaccaggttcaattactcaccgctggcagaattgaaaacaacattgtttgctcttcaagctgtgctggttgatgcagagcaga 10526909  T
Q  209 aacagttcaatgatcttcctg 229  Q
    ||||||||| ||| |||||||    
T  10526910 aacagttcactgaccttcctg 10526930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 10541354 - 10541545
Alignment:
Q  38 ctttggtgggaggtgcgtttctctctgctaccattcaaaccatagcagagaaacttacctcatcagagtttcgtggtttcataaaaaacacaaagttcaa 137  Q
    ||||||| | |||||| | |||||||||||| | ||||||||||||||| || || | |||||||||||||||||||||||| | |||||| | ||||||    
T  10541354 ctttggtcgcaggtgcatgtctctctgctactactcaaaccatagcagacaagctaagctcatcagagtttcgtggtttcatcagaaacaccaggttcaa 10541453  T
Q  138 ttattcgcaactggctgagttgaaaacaacactgtttgctcttcaagctgtgctggttgatgcagagcagaaacagttcaatgatcttcctg 229  Q
    ||| || |  ||||| || |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||    
T  10541454 ttactcactgctggccgaattgaaaacaacattgtttgctcttcaatctgtgctggttgatgcagagcagaaacagttcattgaccttcctg 10541545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 13343440 - 13343634
Alignment:
Q  9 tttactttaccaatcaaacatggctgcagctttggtgggaggtgcgtttctctctgctaccattcaaaccatagcagagaaacttacctcatcagagttt 108  Q
    ||||||||| ||||  || ||||||||| ||||||||||||| || ||||||||||||||  |||| ||  |||  ||||||||| | |||  |||||||    
T  13343440 tttactttaacaatagaaaatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttt 13343539  T
Q  109 cgtggtttcataaaaaacacaaagttcaattattcgcaactggctgagttgaaaacaacactgtttgctcttcaagctgtgctggttgatgcaga 203  Q
     ||| || ||||| |||||| ||| | ||||  ||||   | || |||||| ||||||||||| | |||||||| || ||||||| |||||||||    
T  13343540 tgtgattacataagaaacaccaagctgaattcctcgctgtttgcagagttggaaacaacactgctcgctcttcaggcggtgctggatgatgcaga 13343634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 13332255 - 13332455
Alignment:
Q  9 tttactttaccaatcaaacatggctgcagctttggtgggaggtgcgtttctctctgctaccattcaaaccatagcagagaaacttacctcatcagagttt 108  Q
    ||||||||| ||||  || ||||||||| ||||||||||||| || ||||||||||||||  |||| ||  |||  ||||||||| | |||  |||||||    
T  13332255 tttactttaacaatagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttt 13332354  T
Q  109 cgtggtttcataaaaaacacaaagttcaattattcgcaactggctgagttgaaaacaacactgtttgctcttcaagctgtgctggttgatgcagagcaga 208  Q
     ||| || ||| | |||||| ||| | ||||  || |   |||| |||||| ||||||||||| | |||||||| || ||||||| ||||||||| ||||    
T  13332355 tgtgattacatcagaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggcggtgctggatgatgcagaacaga 13332454  T
Q  209 a 209  Q
    |    
T  13332455 a 13332455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 10031342 - 10031411
Alignment:
Q  9 tttactttaccaatcaaacatggctgcagctttggtgggaggtgcgtttctctctgctaccattcaaacc 78  Q
    |||||| ||||||||| | ||||||||||||||||| |||||||| ||||| ||||||||  ||||||||    
T  10031342 tttactataccaatcagagatggctgcagctttggttggaggtgcatttctgtctgctactcttcaaacc 10031411  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 10662865 - 10662922
Alignment:
Q  9 tttactttaccaatcaaacatggctgcagctttggtgggaggtgcgtttctctctgct 66  Q
    |||||| ||||||||| | ||||||||||||||||| |||||||||||||| ||||||    
T  10662865 tttactataccaatcagagatggctgcagctttggttggaggtgcgtttctgtctgct 10662922  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 10126275 - 10126324
Alignment:
Q  17 accaatcaaacatggctgcagctttggtgggaggtgcgtttctctctgct 66  Q
    |||||||| | ||||||||||||||||| |||||||||||||| ||||||    
T  10126275 accaatcagagatggctgcagctttggttggaggtgcgtttctgtctgct 10126324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 10260045 - 10260094
Alignment:
Q  17 accaatcaaacatggctgcagctttggtgggaggtgcgtttctctctgct 66  Q
    |||||||| | ||||||||||||||||| |||||||||||||| ||||||    
T  10260045 accaatcagagatggctgcagctttggttggaggtgcgtttctgtctgct 10260094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 13170382 - 13170582
Alignment:
Q  9 tttactttaccaatcaaacatggctgcagctttggtgggaggtgcgtttctctctgctaccattcaaaccatagcagagaaacttacctcatcagagttt 108  Q
    ||||||||| ||||  || ||||||||| ||||||||||||| || ||||||||||||||  |||| ||  |||  ||||||||| | |||  |||||||    
T  13170382 tttactttaacaatagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttt 13170481  T
Q  109 cgtggtttcataaaaaacacaaagttcaattattcgcaactggctgagttgaaaacaacactgtttgctcttcaagctgtgctggttgatgcagagcaga 208  Q
     ||| || ||| | |||||| ||| | ||||  || |   |||| |||||| ||||||||||| | |||||||| || || || | ||||||||| ||||    
T  13170482 tgtgattacatcagaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggcggttcttgatgatgcagaacaga 13170581  T
Q  209 a 209  Q
    |    
T  13170582 a 13170582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 13289016 - 13289075
Alignment:
Q  9 tttactttaccaatcaaacatggctgcagctttggtgggaggtgcgtttctctctgctac 68  Q
    ||||||||| ||||  || ||||||||| ||||||||||||| || ||||||||||||||    
T  13289016 tttactttaacaatagaaaatggctgcaactttggtgggaggagcttttctctctgctac 13289075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 11162817 - 11162765
Alignment:
Q  28 atggctgcagctttggtgggaggtgcgtttctctctgctaccattcaaaccat 80  Q
    ||||||||| ||||||| |||||||| ||||| |||||| | |||||||||||    
T  11162817 atggctgcaactttggttggaggtgcatttctatctgcttctattcaaaccat 11162765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 13160350 - 13160390
Alignment:
Q  28 atggctgcagctttggtgggaggtgcgtttctctctgctac 68  Q
    ||||||||| ||||||||||||| || ||||||||||||||    
T  13160350 atggctgcaactttggtgggaggggcttttctctctgctac 13160390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 17853638 - 17853418
Alignment:
Q  9 tttactttaccaatcaaacatggctgcagctttggtgggaggtgcgtttctctctgctaccattcaaaccatagcagagaaacttacctcatcagagttt 108  Q
    |||||||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||| ||||||||||||||||| || || | |||||| ||||||    
T  17853638 tttactttaccaatcaaatatggctgcaactttggtggcaggtgcatttctctctgctactattcaaaccatagcagataagctaagctcatcggagttt 17853539  T
Q  109 cgtggtttcataaaaaacacaaagttcaattattcgcaactggctgagttgaaaacaacactgtttgctcttcaagctgtgctggttgatgcagagcaga 208  Q
    ||  ||||||| | || ||| ||||||||||| || ||||||   ||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||    
T  17853538 cgcagtttcatcagaagcaccaagttcaattactcacaactgaaagagttgaaaacgacactgttttctcttcaagctgtgctggttgatgcagaacaga 17853439  T
Q  209 aacagttcaatgatcttcctg 229  Q
    |||| ||||| ||||||||||    
T  17853438 aacaattcaacgatcttcctg 17853418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 136606 - 136406
Alignment:
Q  9 tttactttaccaatcaaacatggctgcagctttggtgggaggtgcgtttctctctgctaccattcaaaccatagcagagaaacttacctcatcagagttt 108  Q
    ||||||||| ||||  || ||||||||| ||||||||||||| || ||||||||||||||  |||| ||  |||  ||||||||| | |||  |||||||    
T  136606 tttactttaacaatagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttt 136507  T
Q  109 cgtggtttcataaaaaacacaaagttcaattattcgcaactggctgagttgaaaacaacactgtttgctcttcaagctgtgctggttgatgcagagcaga 208  Q
     ||| || ||| | |||||| ||| | ||||  || |   |||| |||||| ||||||||||| | |||||||| || || || | ||||||||| ||||    
T  136506 tgtgattacatcagaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggcggttcttgatgatgcagaacaga 136407  T
Q  209 a 209  Q
    |    
T  136406 a 136406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 146638 - 146598
Alignment:
Q  28 atggctgcagctttggtgggaggtgcgtttctctctgctac 68  Q
    ||||||||| ||||||||||||| || ||||||||||||||    
T  146638 atggctgcaactttggtgggaggggcttttctctctgctac 146598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 31680438 - 31680400
Alignment:
Q  28 atggctgcagctttggtgggaggtgcgtttctctctgct 66  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  31680438 atggctgcaactttggtgggaggtgcatttctctctgct 31680400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 11484368 - 11484425
Alignment:
Q  9 tttactttaccaatcaaacatggctgcagctttggtgggaggtgcgtttctctctgct 66  Q
    |||||||||||| ||| | ||||||||||||||| | |||||||| ||||| ||||||    
T  11484368 tttactttaccattcagagatggctgcagctttgattggaggtgcatttctgtctgct 11484425  T

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