View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_64 (Length: 239)
Name: NF3021_low_64
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_64 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 1186002 - 1186228
Alignment:
| Q |
18 |
agatgaacatgcaatcaaccacctcatctctttttgtcatttgattgaatatataactttggactcctgtaaggtgttaagttctggtggtggcacaagg |
117 |
Q |
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| T |
1186002 |
agatgaacatgcaatcaaccacctcatctctttttgtcatttgattgaatatataactttggactcctgtaaggtgctaagttctggtggtggcacaagg |
1186101 |
T |
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| Q |
118 |
gagccaatgaagtctttaagaattagtggtctacaaaagctcaagagtgttgatgtttcaggaataaaatatg-----attgatgcctcgagtcttgaga |
212 |
Q |
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| T |
1186102 |
gagccaatgaagtctttaagaattagtggtctacaaaagctcaagagtgttgatgtttcaggaataaaatatgtttctattgatgcctcgagtcttgaga |
1186201 |
T |
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| Q |
213 |
atttatgttattctcctggtaatcaaa |
239 |
Q |
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| T |
1186202 |
atttatgttattctcctggtaatcaaa |
1186228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 1180637 - 1180843
Alignment:
| Q |
18 |
agatgaacatgcaatcaaccacctcatctctttttgtcatttgattgaatatataactttggactcctgtaaggtgttaagttctggtggtggcacaagg |
117 |
Q |
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| T |
1180637 |
agatgaacatgcaattaaccaactcatctctttttgtcctttgattgaatatataactttggatttatgtgaggtgttaagttctggtggtggcacaagg |
1180736 |
T |
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| Q |
118 |
gagccaatgaagtctttaagaattagtggtctacaaaagctcaagagtgttgatgtttcaggaataaaatatg-----attgatgcctcgagtcttgaga |
212 |
Q |
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| T |
1180737 |
ta---tatggagtatgtgagcattagtggtctacaaaatctcaagagtgttgatgtttcagcaatacaagatgtttctattgatgcttcaagtcttgaga |
1180833 |
T |
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| Q |
213 |
atttatgtta |
222 |
Q |
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| T |
1180834 |
atttttgtta |
1180843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 5203731 - 5203791
Alignment:
| Q |
18 |
agatgaacatgcaatcaaccacctcatctctttttgtcatttgattgaatatataactttg |
78 |
Q |
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| T |
5203731 |
agatgaacatgcaattgagcatctcatttcttgttgtcctttgattgaacatataactttg |
5203791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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