View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_low_66 (Length: 238)

Name: NF3021_low_66
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_low_66
NF3021_low_66
[»] chr2 (4 HSPs)
chr2 (18-238)||(13111995-13112214)
chr2 (18-117)||(18038648-18038748)
chr2 (95-153)||(12061247-12061305)
chr2 (35-117)||(27483842-27483924)
[»] chr1 (2 HSPs)
chr1 (20-162)||(35896408-35896550)
chr1 (46-117)||(19227788-19227859)
[»] scaffold0329 (1 HSPs)
scaffold0329 (18-115)||(4617-4714)
[»] chr7 (1 HSPs)
chr7 (18-117)||(28981502-28981600)
[»] chr3 (3 HSPs)
chr3 (42-117)||(5797951-5798026)
chr3 (59-183)||(9796527-9796649)
chr3 (22-114)||(31375342-31375434)
[»] chr8 (1 HSPs)
chr8 (43-117)||(19712014-19712088)
[»] chr4 (3 HSPs)
chr4 (59-117)||(19053571-19053629)
chr4 (26-91)||(13977063-13977128)
chr4 (18-78)||(4415372-4415432)
[»] chr6 (1 HSPs)
chr6 (19-95)||(24576090-24576166)
[»] chr5 (1 HSPs)
chr5 (18-78)||(37390562-37390622)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 13112214 - 13111995
Alignment:
Q  18 cttgtatatgttcttctagaactaaaacttgatttaatactttaaattttagtttatggtctcgcacacttgaatatacattaatatatctaattgttct 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||    
T  13112214 cttgtatatgttcttctagaaccaaaacttgatttaatactttaaattttagtttatggtctcccacacttgaacatacattagtatatctaattgttct 13112115  T
Q  118 cttgatactttattttcataaaaaattcagagacatcctacaaaaatctatttcgtttcaacatcactaattccactaaacataaatgttacccaaatat 217  Q
     || |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13112114 tttaatactttattttcataaaaaatgcagagacatcctac-aaaatctatttcgtttcaacatcactaattccactaaacataaatgttacccaaatat 13112016  T
Q  218 tttccgtttagacaacgtttg 238  Q
    |||||||||||||||||||||    
T  13112015 tttccgtttagacaacgtttg 13111995  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 18038648 - 18038748
Alignment:
Q  18 cttgtatatgttcttctagaactaaaacttgatttaatac-tttaaattttagtttatggtctcgcacacttgaatatacattaatatatctaattgttc 116  Q
    |||||||||||||||| | ||| ||||||||||||||||| | ||| || ||||  |||||| |||||||||||| ||||||||  ||||| ||||||||    
T  18038648 cttgtatatgttcttccataaccaaaacttgatttaatacatataatttctagtcaatggtcacgcacacttgaacatacattagcatatccaattgttc 18038747  T
Q  117 t 117  Q
    |    
T  18038748 t 18038748  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 12061247 - 12061305
Alignment:
Q  95 acattaatatatctaattgttctcttgatactttattttcataaaaaattcagagacat 153  Q
    ||||||| ||||||||||||||| || |||||||||| |||| |||| |||||||||||    
T  12061247 acattaacatatctaattgttcttttcatactttattatcatcaaaacttcagagacat 12061305  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 27483924 - 27483842
Alignment:
Q  35 agaactaaaacttgatttaatactttaaattttagtttatggtctcgcacacttgaatatacattaatatatctaattgttct 117  Q
    ||||| |||||||||||| | | ||  ||||| | |||||||||  ||||||||||| | ||||||||||||| |||||||||    
T  27483924 agaaccaaaacttgattttagaattagaatttaattttatggtcctgcacacttgaacacacattaatatatcaaattgttct 27483842  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 35896408 - 35896550
Alignment:
Q  20 tgtatatgttcttctagaactaaaacttgatttaatactttaaattttagtttatggtctcgcacacttgaatatacattaatatatctaattgttctct 119  Q
    |||||||||||||  || |||||||||| ||||||||| || ||||||||||| |||||   |||||||||| ||||||||| ||||  ||||||||| |    
T  35896408 tgtatatgttctttcagtactaaaactttatttaatacatttaattttagtttgtggtcctacacacttgaacatacattaacatattcaattgttcttt 35896507  T
Q  120 tgatactttattttcataaaaaattcagagacatcctacaaaa 162  Q
    | ||||||| || |||| |||| |||||| ||||  |||||||    
T  35896508 taatactttcttatcatcaaaacttcagatacattatacaaaa 35896550  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 19227788 - 19227859
Alignment:
Q  46 ttgatttaatactttaaattttagtttatggtctcgcacacttgaatatacattaatatatctaattgttct 117  Q
    |||||||||||| || |||||||||||||||||  ||||||||||| ||| |||||||||| ||||||||||    
T  19227788 ttgatttaatacattgaattttagtttatggtcctgcacacttgaacatatattaatatatttaattgttct 19227859  T

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Target: scaffold0329 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 4617 - 4714
Alignment:
Q  18 cttgtatatgttcttctagaactaaaacttgatttaatactttaaattttagtttatggtctcgcacacttgaatatacattaatatatctaattgtt 115  Q
    ||||||||  || ||||||||| ||||||||| |||||||| | ||||||||| |||||||  ||||||||||| ||| ||||  ||||| |||||||    
T  4617 cttgtatacatttttctagaacgaaaacttgacttaatactatgaattttagtatatggtcctgcacacttgaaaatatattagcatatccaattgtt 4714  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 28981502 - 28981600
Alignment:
Q  18 cttgtatatgttcttctagaactaaaacttgatttaatactttaaattttagtttatggtctcgca-cacttgaatatacattaatatatctaattgttc 116  Q
    |||||||||||||||| | ||| |||||||||||| |||| |||||||||||||| |||| || || |||||||| ||||||||  ||||| ||||||||    
T  28981502 cttgtatatgttcttccataaccaaaacttgatttgatacattaaattttagttt-tggt-tctcagcacttgaacatacattagcatatccaattgttc 28981599  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 5798026 - 5797951
Alignment:
Q  42 aaacttgatttaatactttaaattttagtttatggtctcgcacacttgaatatacattaatatatctaattgttct 117  Q
    ||||||||||| |||| | ||||||||||||||| |   ||||||||||| ||||||||| ||||| |||||||||    
T  5798026 aaacttgatttgatacatgaaattttagtttatgattctgcacacttgaacatacattaacatatccaattgttct 5797951  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 183
Target Start/End: Original strand, 9796527 - 9796649
Alignment:
Q  59 ttaaattttagtttatggtctcgcacacttgaatatacattaatatatctaattgttctcttgatactttattttcataaaaaattcagagacatcctac 158  Q
    |||||||||| | |||| ||  ||||||||||| ||| ||||| ||||| ||||||||| || |||||||||| |||| |||| |||||||| ||  |||    
T  9796527 ttaaattttaatctatgatcctgcacacttgaacatatattaacatatccaattgttct-ttaatactttattatcatcaaaacttcagagaaattgtac 9796625  T
Q  159 aaaaatctatttcgtttcaacatca 183  Q
     |||||| |||| ||| ||||||||    
T  9796626 -aaaatcaattttgttccaacatca 9796649  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 31375434 - 31375342
Alignment:
Q  22 tatatgttcttctagaactaaaacttgatttaatactttaaattttagtttatggtctcgcacacttgaatatacattaatatatctaattgt 114  Q
    |||||||||||  || || ||||||||||||||||| || ||| ||||| ||||| |  ||||||||||| || |||||  ||||| ||||||    
T  31375434 tatatgttctttcagtaccaaaacttgatttaatacattgaatcttagtctatggccctgcacacttgaacatgcattagcatatcaaattgt 31375342  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 19712088 - 19712014
Alignment:
Q  43 aacttgatttaatactttaaattttagtttatggtctcgcacacttgaatatacattaatatatctaattgttct 117  Q
    ||||||| || |||| || | ||||||| |||||||| ||| ||||||| ||| ||||| |||||||||||||||    
T  19712088 aacttgaatttatacattgagttttagtgtatggtcttgcatacttgaacatatattaacatatctaattgttct 19712014  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 19053571 - 19053629
Alignment:
Q  59 ttaaattttagtttatggtctcgcacacttgaatatacattaatatatctaattgttct 117  Q
    |||||||||| |||||||||  ||||||||||| ||| ||||  |||||||||||||||    
T  19053571 ttaaattttaatttatggtccagcacacttgaacatatattagcatatctaattgttct 19053629  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 13977128 - 13977063
Alignment:
Q  26 tgttcttctagaactaaaacttgatttaatactttaaattttagtttatggtctcgcacacttgaa 91  Q
    |||||||  ||||| |||||||||||||||||||| ||||| | | |||||||| ||| |||||||    
T  13977128 tgttcttacagaaccaaaacttgatttaatactttgaatttaattatatggtcttgcatacttgaa 13977063  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 4415372 - 4415432
Alignment:
Q  18 cttgtatatgttcttctagaactaaaacttgatttaatactttaaattttagtttatggtc 78  Q
    ||||||||| |||||  ||||  ||||||||||||||||| || ||||||||| |||||||    
T  4415372 cttgtatattttctttcagaatcaaaacttgatttaatacattgaattttagtctatggtc 4415432  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 24576090 - 24576166
Alignment:
Q  19 ttgtatatgttcttctagaactaaaacttgatttaatactttaaattttagtttatggtctcgcacacttgaatata 95  Q
    |||||||| |||||| || |  |||||||||||| ||||| | ||||||||| |||||||  ||||| |||||||||    
T  24576090 ttgtatatattcttccaggatcaaaacttgattttatactatgaattttagtctatggtcatgcacatttgaatata 24576166  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 37390562 - 37390622
Alignment:
Q  18 cttgtatatgttcttctagaactaaaacttgatttaatactttaaattttagtttatggtc 78  Q
    |||||||||||||||  || || |||||||||||||| || || ||||||||| |||||||    
T  37390562 cttgtatatgttctttcagtaccaaaacttgatttaacacattgaattttagtctatggtc 37390622  T

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