View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_67 (Length: 237)
Name: NF3021_low_67
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 11685552 - 11685764
Alignment:
| Q |
1 |
atgtagagaaagtgcaagaatcaagaataaaatccaagaaagtgctagaatggaatggaattcactagaaacaaataggactgatactgtattatgaata |
100 |
Q |
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| T |
11685552 |
atgtagagaaagtgcaagaatcaagaatgaaatccaagaaagtgct-----ggaatggaattcactagaaacaaataggacagataccgtattatgaata |
11685646 |
T |
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| Q |
101 |
tgcaaattagaaaaattgagagctcaaatgcatgctaggagtaaagtgattttccctacttcattcaattattta-tacatgtaggtagtcaccgtcata |
199 |
Q |
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| T |
11685647 |
tgcaaattagaaaaattgagagctcaaatgcatgataggagtaaagtgattttccttacttcattcaatgatctagtaaa--taggtagtcatcgtcata |
11685744 |
T |
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| Q |
200 |
agctaagctatgtctgttat |
219 |
Q |
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|||||||||||||||||||| |
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| T |
11685745 |
agctaagctatgtctgttat |
11685764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 11715521 - 11715309
Alignment:
| Q |
1 |
atgtagagaaagtgcaagaatcaagaataaaatccaagaaagtgctagaatggaatggaattcactagaaacaaataggactgatactgtattatgaata |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
11715521 |
atgtagagaaagtgcaagaatcaagaatgaaatccaagaaagtgct-----ggaatggaattcactagaaacaaataggacagataccgtattatgaata |
11715427 |
T |
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| Q |
101 |
tgcaaattagaaaaattgagagctcaaatgcatgctaggagtaaagtgattttccctacttcattcaattattta-tacatgtaggtagtcaccgtcata |
199 |
Q |
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| T |
11715426 |
tgcaaattagaaaaattgagagctcaaatgcatgataggagtaaagtgatttttcttacttcattcaatgatctagtaaa--taggtagtcatcgtcata |
11715329 |
T |
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| Q |
200 |
agctaagctatgtctgttat |
219 |
Q |
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|||||||||||||||||||| |
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| T |
11715328 |
agctaagctatgtctgttat |
11715309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 27653262 - 27653389
Alignment:
| Q |
1 |
atgtagagaaagtgcaagaatcaagaataaaatccaagaaagtgctagaatggaatggaattcactagaa-acaaataggactgatactgtattatgaat |
99 |
Q |
| |
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||||||||| |||||||||||||||||||||| || ||||||||| |||||||||||||||||| |||| |||| ||||||||||||||||||||| |
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| T |
27653262 |
atgtagagatagtgcaagaatcaagaataaaaccctagaaagtgcaggaatggaatggaattcacaagaatgaaaatgtgactgatactgtattatgaat |
27653361 |
T |
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| Q |
100 |
atgcaaattagaaaaattgagagctcaaa |
128 |
Q |
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| T |
27653362 |
atgcaaattag-aaaattgagagctcaaa |
27653389 |
T |
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