View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_low_70 (Length: 236)

Name: NF3021_low_70
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_low_70
NF3021_low_70
[»] chr3 (5 HSPs)
chr3 (49-100)||(4816706-4816757)
chr3 (49-100)||(54383601-54383652)
chr3 (49-100)||(13619126-13619177)
chr3 (49-100)||(21401579-21401630)
chr3 (49-100)||(45986150-45986201)
[»] chr7 (3 HSPs)
chr7 (49-105)||(42898534-42898590)
chr7 (60-97)||(26423195-26423232)
chr7 (57-100)||(4018714-4018757)
[»] chr1 (4 HSPs)
chr1 (49-100)||(8445662-8445713)
chr1 (54-100)||(30700879-30700925)
chr1 (49-78)||(7639034-7639063)
chr1 (51-100)||(8441051-8441100)
[»] chr5 (4 HSPs)
chr5 (49-100)||(26303923-26303974)
chr5 (49-92)||(43061783-43061826)
chr5 (49-100)||(33461905-33461956)
chr5 (61-100)||(36474946-36474985)
[»] chr4 (3 HSPs)
chr4 (49-100)||(33123953-33124003)
chr4 (60-100)||(1845367-1845407)
chr4 (49-100)||(9317588-9317640)
[»] chr6 (1 HSPs)
chr6 (60-97)||(29451750-29451787)


Alignment Details
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 4816757 - 4816706
Alignment:
Q  49 cacacatcaaagaccttccaacatcttaatgctcctacttaggtcacaagct 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4816757 cacacatcaaagaccttccaacatcttaatgcccctacttaggtcacaagct 4816706  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 54383652 - 54383601
Alignment:
Q  49 cacacatcaaagaccttccaacatcttaatgctcctacttaggtcacaagct 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54383652 cacacatcaaagaccttccaacatcttaatgcccctacttaggtcacaagct 54383601  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 13619177 - 13619126
Alignment:
Q  49 cacacatcaaagaccttccaacatcttaatgctcctacttaggtcacaagct 100  Q
    |||||||||||||||| ||||||||||||||| ||||||||  |||||||||    
T  13619177 cacacatcaaagacctcccaacatcttaatgcccctacttaaatcacaagct 13619126  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 21401579 - 21401630
Alignment:
Q  49 cacacatcaaagaccttccaacatcttaatgctcctacttaggtcacaagct 100  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||| |||||    
T  21401579 cacacgtcaaatacctttcaacatcttaatgctcctacttaggtcataagct 21401630  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 45986201 - 45986150
Alignment:
Q  49 cacacatcaaagaccttccaacatcttaatgctcctacttaggtcacaagct 100  Q
    |||||||||||||| ||||||||||||||||  |||| |||| |||||||||    
T  45986201 cacacatcaaagactttccaacatcttaatgtccctatttagatcacaagct 45986150  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 42898590 - 42898534
Alignment:
Q  49 cacacatcaaagaccttccaacatcttaatgctcctacttaggtcacaagctcggca 105  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  42898590 cacacatcaaagaccttccaacatcttaatgaccctacttaggtcacaagcttggca 42898534  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 26423232 - 26423195
Alignment:
Q  60 gaccttccaacatcttaatgctcctacttaggtcacaa 97  Q
    |||||||||||||||||||||||| |||||||||||||    
T  26423232 gaccttccaacatcttaatgctccaacttaggtcacaa 26423195  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 4018714 - 4018757
Alignment:
Q  57 aaagaccttccaacatcttaatgctcctacttaggtcacaagct 100  Q
    |||||||||| ||||||||||||| | |||||||||||||||||    
T  4018714 aaagaccttctaacatcttaatgcccttacttaggtcacaagct 4018757  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 8445713 - 8445662
Alignment:
Q  49 cacacatcaaagaccttccaacatcttaatgctcctacttaggtcacaagct 100  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  8445713 cacacatcaaagaccttccaacatcttaatgcccctatttaggtcacaagct 8445662  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 30700879 - 30700925
Alignment:
Q  54 atcaaagaccttccaacatcttaatgctcctacttaggtcacaagct 100  Q
    ||||| |||||||||||||||||| || |||||||||||||||||||    
T  30700879 atcaaggaccttccaacatcttaaagcccctacttaggtcacaagct 30700925  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 78
Target Start/End: Original strand, 7639034 - 7639063
Alignment:
Q  49 cacacatcaaagaccttccaacatcttaat 78  Q
    ||||||||||||||||||||||||||||||    
T  7639034 cacacatcaaagaccttccaacatcttaat 7639063  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 8441100 - 8441051
Alignment:
Q  51 cacatcaaagaccttccaacatcttaatgctcctacttaggtcacaagct 100  Q
    |||||||||||| |||||||| |||| ||| ||||||||||| |||||||    
T  8441100 cacatcaaagactttccaacaccttattgcccctacttaggttacaagct 8441051  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 26303974 - 26303923
Alignment:
Q  49 cacacatcaaagaccttccaacatcttaatgctcctacttaggtcacaagct 100  Q
    |||||||||||||||| ||||||||||||||| ||||||||  |||||||||    
T  26303974 cacacatcaaagacctcccaacatcttaatgcccctacttaaatcacaagct 26303923  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 43061826 - 43061783
Alignment:
Q  49 cacacatcaaagaccttccaacatcttaatgctcctacttaggt 92  Q
    |||||||||||||| ||||||||||||||||| |||||||||||    
T  43061826 cacacatcaaagactttccaacatcttaatgcccctacttaggt 43061783  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 33461905 - 33461956
Alignment:
Q  49 cacacatcaaagaccttccaacatcttaatgctcctacttaggtcacaagct 100  Q
    ||||||| |||||||||||||||||||||| ||| ||||||  |||||||||    
T  33461905 cacacattaaagaccttccaacatcttaatactcttacttaaatcacaagct 33461956  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 36474946 - 36474985
Alignment:
Q  61 accttccaacatcttaatgctcctacttaggtcacaagct 100  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  36474946 accttccaacatcttaatgcgcctacttaagtcacaagct 36474985  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 33123953 - 33124003
Alignment:
Q  49 cacacatcaaagaccttccaacatcttaatgctcctacttaggtcacaagct 100  Q
    ||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  33123953 cacacatcaaa-accttccaacatcttaatgatcgtacttaggtcacaagct 33124003  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 1845367 - 1845407
Alignment:
Q  60 gaccttccaacatcttaatgctcctacttaggtcacaagct 100  Q
    ||||||| |||||||||||||  ||||||||||||||||||    
T  1845367 gaccttctaacatcttaatgcatctacttaggtcacaagct 1845407  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 9317588 - 9317640
Alignment:
Q  49 cacacatcaaag-accttccaacatcttaatgctcctacttaggtcacaagct 100  Q
    |||||||||||| ||||||||||| |||||||  |||||||| ||||||||||    
T  9317588 cacacatcaaaggaccttccaacaccttaatgaccctacttatgtcacaagct 9317640  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 29451787 - 29451750
Alignment:
Q  60 gaccttccaacatcttaatgctcctacttaggtcacaa 97  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  29451787 gaccttccaacatcttaatacccctacttaggtcacaa 29451750  T

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