View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_74 (Length: 229)
Name: NF3021_low_74
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_74 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9639319 - 9639099
Alignment:
| Q |
1 |
ttgtgttttcaagagaatattat-atttatagtttctttaaacgatgctcttaaacactttgttaacatcacacttatattattgtattgtgattgtgtt |
99 |
Q |
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||||||||||||||||||||| |||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9639319 |
ttgtgttttcaagagaatatttcgatttatggtttctttaaacaacgctcttaaacactttgttaacataacacttatattattgtattgtgattgtgtt |
9639220 |
T |
|
| Q |
100 |
tcccttgcatctttttcgaggacacggatcatttccttcacaagtctgtgatgacatcatctcgcattacggtagttcaaatggttgagactacttaata |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9639219 |
tcccttgcatctttttcgaggacacggatcatttccttcacaagtctgtgttg---ccatctcgcattacggtagttcaaatggttgagactatttaatt |
9639123 |
T |
|
| Q |
200 |
actttattttactttctctctctg |
223 |
Q |
| |
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||||||||||||||| |||||||| |
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| T |
9639122 |
actttattttactttttctctctg |
9639099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13597926 - 13598146
Alignment:
| Q |
1 |
ttgtgttttcaagagaatattat-atttatagtttctttaaacgatgctcttaaacactttgttaacatcacacttatattattgtattgtgattgtgtt |
99 |
Q |
| |
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||||||||||||||||||||| |||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13597926 |
ttgtgttttcaagagaatatttcgatttatggtttctttaaacaacgctcttaaacactttgttaacataacacttatattattgtattgtgattgtgtt |
13598025 |
T |
|
| Q |
100 |
tcccttgcatctttttcgaggacacggatcatttccttcacaagtctgtgatgacatcatctcgcattacggtagttcaaatggttgagactacttaata |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13598026 |
tcccttgcatctttttcgaggacacggatcatttccttcacaagtctgtgttg---ccatctcgcattacggtagttcaaatggttgagactatttaatt |
13598122 |
T |
|
| Q |
200 |
actttattttactttctctctctg |
223 |
Q |
| |
|
||||||||||||||| |||||||| |
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|
| T |
13598123 |
actttattttactttttctctctg |
13598146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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