View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_76 (Length: 227)
Name: NF3021_low_76
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 34765348 - 34765170
Alignment:
| Q |
7 |
gaattcacatgtgaaaattattatccgtaaccacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaacc |
106 |
Q |
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| T |
34765348 |
gaattcacatgtgaaaattattatccgtaaccacaatgagttcattgtcacattcctcgttccaacacttgatcctctcactctttcaatgcatcaaacc |
34765249 |
T |
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| Q |
107 |
ttgaacattgttgttaatatgtactttgaagatatttgatttttggtttggaattggctattagaggcaggtcacttta |
185 |
Q |
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| T |
34765248 |
ttgaacattgttgttaatatgtactttgaagatatttgatttttggtttggaattggctattagaggcaggtcacttta |
34765170 |
T |
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Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 6440469 - 6440662
Alignment:
| Q |
15 |
atgtgaaaattattatccgtaaccacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaacat |
114 |
Q |
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| T |
6440469 |
atgtgaaattcattatcgttaaccacaatgagttcattgtcacattcctcgttccaacatttggtcgtctcactccttcaatgtagcaagtattgaacac |
6440568 |
T |
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| Q |
115 |
tgttgttaatatgtactttgaagatatttgatttttggtttggaattggctattagaggcaggtcactttactattgtatgtttttgtttggctt |
209 |
Q |
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| T |
6440569 |
tattg-taatgtgcccttcgaagatatttgatttttggtttggaattgggttttagaagtaggttaattttctatagtttgtatttgtttggctt |
6440662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 895501 - 895426
Alignment:
| Q |
38 |
cacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaaca |
113 |
Q |
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| T |
895501 |
cacaatgaattcattgtcacattcatcattccaacactttctcctcttactccttcaatgcaacaagtcttgaaca |
895426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 905139 - 905214
Alignment:
| Q |
38 |
cacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaaca |
113 |
Q |
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| T |
905139 |
cacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaaca |
905214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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