View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_79 (Length: 226)
Name: NF3021_low_79
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_79 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 40023591 - 40023366
Alignment:
| Q |
1 |
atgagagagaaagacagagatggccaccctagggcaactgcatcggcattctccttcagtaacatgtaggttttacgggcggggaagggttctagttagg |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40023591 |
atgagagagaaagaaagagatggccaccctagggcaactgcatcggcattctccttcagtaacatgtaggttttacgggcggggaagggttctagttaga |
40023492 |
T |
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| Q |
101 |
gtgacataaataggggtgattggtctgaggtgagcaggcaacgacgaaaagcgatcagtccaggaagcacatgacatgacgagtttggtaggttcaagcg |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40023491 |
gtgacataaatatgggtgattggtctgaggtgagcaggcaacgacaaaaagcgatcagtccaagaagcacatgacatgacgagtttggtaggttcaagcg |
40023392 |
T |
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| Q |
201 |
acaagaagggtatgacataggctacc |
226 |
Q |
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||||||||| |||||||||||||||| |
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| T |
40023391 |
acaagaaggttatgacataggctacc |
40023366 |
T |
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