View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_8 (Length: 697)
Name: NF3021_low_8
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 18 - 687
Target Start/End: Complemental strand, 55330513 - 55329834
Alignment:
| Q |
18 |
gttcttgtcgaatgaaaggaattgatgttgatgaatttgctaacaagctcttctaattgcgtatgacacaaggaaactgatgtagctggattagtgagca |
117 |
Q |
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| T |
55330513 |
gttcttgtcgaatgaaaggaattgatgttgatgaatttgctaacaagctgttctaattgcgtatgacacaaggaaactgatgtagctggattagtgagca |
55330414 |
T |
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| Q |
118 |
atttgtttcaactgcacataacgttgattcattaaattcattttttaattatatgtgaaaacatgttttcctattctttgtgtacagatgtttattttat |
217 |
Q |
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| T |
55330413 |
agttgtttcaattgcacataacattgattcatt---------ttttaattatatgtgaaaacatgttttcctattctttgtgtacagatgtttattttat |
55330323 |
T |
|
| Q |
218 |
aatttatgtaacaaaatattgagtttagtggagatgtattgccaaaaaatgaaaattttgtaacggtatccaatgaggattcgtgaaaaactcgatggta |
317 |
Q |
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| T |
55330322 |
aatttatgtaacaaaatattgagtttagtggagatgtattgccaaaaaatgaaaattttgtaacggtatccaacgaggattcgtgaaaaactcgatgtta |
55330223 |
T |
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| Q |
318 |
aaagagtatcacattggttgggagatagcttaaacaag----tgttcat---------------ttaccacaattcggttctgtgaggttgtattagacc |
398 |
Q |
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| T |
55330222 |
aaagagtatcatattggttgggagatagcttaaacaagcaagtgtttatgagtgtgctcaattcttaccataagtcggttttgtgaggttgtattaagtc |
55330123 |
T |
|
| Q |
399 |
caaccacaaattataatgtagtatcatagctacctgctactagatcatccaccatttatatccacgcatttagttcaatattgttggcgtgagaggatgt |
498 |
Q |
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| T |
55330122 |
caaccataaattataacgtagtatcatagctacctgttactagatcatccaccatttatatccacgcatttagttcaatattgttgacgtgagaggatgt |
55330023 |
T |
|
| Q |
499 |
gttaaagagtcctacattgattaaaagatgacatgaacaagtgtttaaaactgggagtaattttcacctcaaaagtcaattttttgggattcgattaggc |
598 |
Q |
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| T |
55330022 |
gttaaagagtcctacattgattaaaagatgacatgaacaagtgtttaaaactgagagtaattttcagctcaaaaataaattttttgggattcggttaggc |
55329923 |
T |
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| Q |
599 |
caaccagaaattctaagtccattttgttacaataatttgtaaataaaatcaatatactgaatttctattggatgtcagtatactctgtg |
687 |
Q |
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| T |
55329922 |
caaccagaaattctaagtccattttgttacaataatttgtaaataaaatcaatatactgaatttctattggatgtcagtatactctgtg |
55329834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 545
Target Start/End: Complemental strand, 7572603 - 7572542
Alignment:
| Q |
484 |
ggcgtgagaggatgtgttaaagagtcctacattgattaaaagatgacatgaacaagtgttta |
545 |
Q |
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| T |
7572603 |
ggcgtgagggggtgtgttaaagagtcctacattagttgagagatggcctgaacaagtgttta |
7572542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 586
Target Start/End: Complemental strand, 10615059 - 10614969
Alignment:
| Q |
496 |
tgtgttaaagagtcctacattgattaaaagatgacatgaacaagtgtttaaaactgggagtaattttcacctcaaaagtcaattttttggg |
586 |
Q |
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| T |
10615059 |
tgtgttaaagagtcccacatcggataaaatatgacatgaacatgtgtttacaaatgggggtaatcttcacctcacaagccgattttgtggg |
10614969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 545
Target Start/End: Original strand, 10615594 - 10615643
Alignment:
| Q |
496 |
tgtgttaaagagtcctacattgattaaaagatgacatgaacaagtgttta |
545 |
Q |
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| T |
10615594 |
tgtgttaaagagtcctacatcgaacaaaatatgacatgaacatgtgttta |
10615643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 536
Target Start/End: Original strand, 47849706 - 47849796
Alignment:
| Q |
447 |
ccaccatttatatccacgcatttagttcaatattgttgg-cgtgagaggatgtgttaaagagtcctacattgattaaaagatgacatgaac |
536 |
Q |
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| T |
47849706 |
ccaccatttatatccacgcactaagctcaatagtattgggcgtgaaggtgtgtgttaaagagtcccacatcggataaaagatgacatgaac |
47849796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 473 - 517
Target Start/End: Original strand, 13210703 - 13210747
Alignment:
| Q |
473 |
tcaatattgttggcgtgagaggatgtgttaaagagtcctacattg |
517 |
Q |
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| T |
13210703 |
tcaatagtgttggcgtgagggggtgtgttaaagagtcccacattg |
13210747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 11234259 - 11234299
Alignment:
| Q |
374 |
cggttctgtgaggttgtattagacccaaccacaaattataa |
414 |
Q |
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| T |
11234259 |
cggttttgtggggttgtattaggcccaaccacaaattataa |
11234299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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