View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3021_low_83 (Length: 208)
Name: NF3021_low_83
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3021_low_83 |
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Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 37272699 - 37272589
Alignment:
| Q |
19 |
gataacaggggtcagcttctgttgtttgttgtagcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatga |
118 |
Q |
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| T |
37272699 |
gataacaggggtcagcttctgttgtttgtggtaacaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatga |
37272600 |
T |
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| Q |
119 |
gacagtgaaac |
129 |
Q |
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| T |
37272599 |
gacagtgaaac |
37272589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 37268655 - 37268551
Alignment:
| Q |
25 |
aggggtcagcttctgttgtttgttgtagcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacagt |
124 |
Q |
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|||| |||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37268655 |
agggctcagcttctgttatttgtggttgcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgagacggt |
37268556 |
T |
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| Q |
125 |
gaaac |
129 |
Q |
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||||| |
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| T |
37268555 |
gaaac |
37268551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 39017061 - 39016975
Alignment:
| Q |
34 |
cttctgttgtttgttgtagcaccagctattctttgggttctttataatattttgcagcctgctcttaaccaaatcaacagaatgaga |
120 |
Q |
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||||||||||||||||| ||||||||||| |||||||| || || |||||||||||||||||||| ||||| |||||||| |||||| |
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| T |
39017061 |
cttctgttgtttgttgttgcaccagctatcctttgggtgctgtacaatattttgcagcctgctctcaaccagatcaacaggatgaga |
39016975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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