View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3021_low_9 (Length: 672)

Name: NF3021_low_9
Description: NF3021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3021_low_9
NF3021_low_9
[»] chr3 (29 HSPs)
chr3 (105-656)||(28422050-28422601)
chr3 (487-655)||(11474825-11474994)
chr3 (11-72)||(28421957-28422018)
chr3 (496-651)||(18474159-18474313)
chr3 (489-620)||(8402552-8402684)
chr3 (520-649)||(13911277-13911407)
chr3 (490-605)||(21829149-21829265)
chr3 (490-649)||(26387818-26387977)
chr3 (505-605)||(26297746-26297847)
chr3 (576-648)||(27415236-27415309)
chr3 (464-650)||(33914539-33914721)
chr3 (476-591)||(19546015-19546125)
chr3 (487-606)||(25188737-25188856)
chr3 (554-650)||(2729590-2729687)
chr3 (537-649)||(12573319-12573432)
chr3 (537-649)||(13549783-13549896)
chr3 (574-649)||(19219184-19219260)
chr3 (487-646)||(21017856-21018016)
chr3 (538-648)||(30493238-30493349)
chr3 (575-649)||(11521206-11521281)
chr3 (549-655)||(33577775-33577881)
chr3 (542-619)||(5632536-5632614)
chr3 (537-605)||(27374468-27374537)
chr3 (492-588)||(19285084-19285179)
chr3 (622-655)||(5632509-5632542)
chr3 (538-630)||(23007057-23007150)
chr3 (539-655)||(23908238-23908354)
chr3 (551-619)||(25919465-25919534)
chr3 (519-649)||(1475252-1475384)
[»] chr7 (35 HSPs)
chr7 (440-655)||(30405528-30405741)
chr7 (476-656)||(7372531-7372709)
chr7 (469-649)||(7361605-7361787)
chr7 (439-606)||(4828722-4828890)
chr7 (490-651)||(17881470-17881631)
chr7 (439-619)||(37144851-37145032)
chr7 (491-655)||(24596971-24597135)
chr7 (491-648)||(4977794-4977952)
chr7 (519-649)||(1255186-1255317)
chr7 (574-656)||(7142164-7142247)
chr7 (490-655)||(3268933-3269098)
chr7 (487-620)||(18496544-18496678)
chr7 (491-591)||(9800579-9800679)
chr7 (551-650)||(23124943-23125043)
chr7 (440-591)||(9755732-9755883)
chr7 (550-655)||(5312753-5312858)
chr7 (487-655)||(29544498-29544667)
chr7 (574-649)||(7815389-7815465)
chr7 (439-579)||(8606001-8606140)
chr7 (519-648)||(1074463-1074593)
chr7 (520-651)||(12358733-12358864)
chr7 (524-655)||(20461615-20461746)
chr7 (490-642)||(22067784-22067939)
chr7 (551-649)||(10292797-10292896)
chr7 (595-649)||(21471884-21471938)
chr7 (551-655)||(8308999-8309103)
chr7 (517-656)||(20470776-20470916)
chr7 (574-656)||(9761381-9761464)
chr7 (574-656)||(9801840-9801923)
chr7 (448-503)||(21543071-21543126)
chr7 (487-529)||(16536668-16536710)
chr7 (487-529)||(16577366-16577408)
chr7 (487-529)||(16588254-16588296)
chr7 (487-529)||(16628952-16628994)
chr7 (537-605)||(21545816-21545885)
[»] chr8 (27 HSPs)
chr8 (476-648)||(24584698-24584871)
chr8 (487-655)||(10866967-10867135)
chr8 (495-655)||(14424780-14424940)
chr8 (495-649)||(30851073-30851227)
chr8 (439-655)||(11437350-11437566)
chr8 (487-655)||(29291750-29291917)
chr8 (517-648)||(32239296-32239428)
chr8 (490-655)||(5153740-5153905)
chr8 (440-651)||(30543695-30543904)
chr8 (492-649)||(31436463-31436620)
chr8 (487-619)||(12956468-12956601)
chr8 (495-599)||(13583532-13583637)
chr8 (592-649)||(16052250-16052307)
chr8 (519-606)||(14977122-14977211)
chr8 (548-648)||(28074554-28074653)
chr8 (487-606)||(35135438-35135558)
chr8 (519-649)||(16054305-16054436)
chr8 (551-649)||(28902132-28902231)
chr8 (595-649)||(26882496-26882550)
chr8 (566-650)||(22894502-22894587)
chr8 (551-649)||(29047292-29047391)
chr8 (486-651)||(13530077-13530242)
chr8 (486-651)||(13619616-13619781)
chr8 (490-649)||(6888166-6888322)
chr8 (538-656)||(5570107-5570226)
chr8 (591-655)||(28260257-28260320)
chr8 (487-587)||(41505573-41505673)
[»] chr4 (21 HSPs)
chr4 (476-649)||(19601766-19601940)
chr4 (440-654)||(29437401-29437617)
chr4 (487-651)||(10576432-10576596)
chr4 (487-655)||(21077212-21077380)
chr4 (490-655)||(23353605-23353769)
chr4 (487-649)||(9782956-9783119)
chr4 (490-651)||(21167711-21167872)
chr4 (574-657)||(17026661-17026745)
chr4 (519-656)||(34864261-34864395)
chr4 (574-655)||(15192269-15192351)
chr4 (440-641)||(22119578-22119779)
chr4 (487-656)||(33519019-33519178)
chr4 (520-657)||(27302790-27302927)
chr4 (487-606)||(46647175-46647295)
chr4 (551-648)||(10320193-10320291)
chr4 (520-656)||(25315197-25315334)
chr4 (490-605)||(24925787-24925903)
chr4 (591-655)||(31859868-31859931)
chr4 (622-656)||(18898097-18898131)
chr4 (548-656)||(13064466-13064574)
chr4 (622-650)||(47024737-47024765)
[»] chr2 (27 HSPs)
chr2 (440-656)||(27917949-27918165)
chr2 (440-592)||(29647576-29647728)
chr2 (487-655)||(19541016-19541184)
chr2 (519-655)||(17152164-17152301)
chr2 (487-606)||(17415211-17415331)
chr2 (487-655)||(22388725-22388888)
chr2 (476-650)||(22510915-22511088)
chr2 (487-620)||(32276515-32276649)
chr2 (490-606)||(24047364-24047481)
chr2 (581-656)||(27417229-27417305)
chr2 (470-650)||(21505111-21505292)
chr2 (487-618)||(21843006-21843138)
chr2 (537-650)||(24187995-24188112)
chr2 (549-655)||(18117024-18117129)
chr2 (487-655)||(34063808-34063975)
chr2 (537-651)||(21849045-21849158)
chr2 (549-655)||(39730488-39730594)
chr2 (554-655)||(18236270-18236371)
chr2 (440-532)||(22525743-22525836)
chr2 (520-648)||(35031714-35031843)
chr2 (487-605)||(21844646-21844765)
chr2 (575-649)||(25474104-25474179)
chr2 (519-656)||(30998782-30998920)
chr2 (577-649)||(16593723-16593796)
chr2 (487-649)||(28278396-28278559)
chr2 (490-655)||(31449939-31450104)
chr2 (611-649)||(35707907-35707945)
[»] chr5 (34 HSPs)
chr5 (438-603)||(23157807-23157976)
chr5 (494-650)||(19331497-19331651)
chr5 (551-656)||(16634089-16634195)
chr5 (448-645)||(16603590-16603785)
chr5 (487-655)||(26070453-26070621)
chr5 (490-655)||(20694622-20694787)
chr5 (487-655)||(20083445-20083614)
chr5 (443-524)||(25367555-25367636)
chr5 (520-648)||(24841765-24841894)
chr5 (551-649)||(18222536-18222635)
chr5 (549-653)||(11997863-11997968)
chr5 (490-656)||(17382010-17382168)
chr5 (537-650)||(17027556-17027670)
chr5 (477-527)||(18873118-18873168)
chr5 (591-656)||(11274296-11274361)
chr5 (537-655)||(19763860-19763976)
chr5 (495-649)||(7742843-7742997)
chr5 (523-649)||(15205658-15205785)
chr5 (521-655)||(24410897-24411031)
chr5 (487-532)||(22643955-22644000)
chr5 (489-619)||(24517335-24517466)
chr5 (578-651)||(25367664-25367737)
chr5 (537-650)||(25594664-25594778)
chr5 (453-654)||(30790726-30790922)
chr5 (577-649)||(22754963-22755036)
chr5 (549-581)||(4325399-4325431)
chr5 (527-606)||(24268574-24268654)
chr5 (527-606)||(24345203-24345283)
chr5 (574-648)||(26330043-26330116)
chr5 (537-619)||(25680625-25680708)
chr5 (611-649)||(25075285-25075323)
chr5 (611-649)||(25133254-25133292)
chr5 (551-647)||(29150882-29150977)
chr5 (537-649)||(22229833-22229946)
[»] chr1 (26 HSPs)
chr1 (537-656)||(25727875-25727995)
chr1 (537-656)||(25736283-25736403)
chr1 (440-655)||(52271212-52271426)
chr1 (517-654)||(30675493-30675631)
chr1 (487-655)||(15298837-15299005)
chr1 (520-656)||(26657488-26657625)
chr1 (551-656)||(25730537-25730643)
chr1 (519-649)||(23223422-23223554)
chr1 (490-600)||(25126462-25126573)
chr1 (487-649)||(30781739-30781902)
chr1 (487-655)||(26102036-26102204)
chr1 (487-647)||(50047160-50047321)
chr1 (495-653)||(19257773-19257931)
chr1 (487-648)||(31313531-31313692)
chr1 (486-650)||(11769966-11770131)
chr1 (487-655)||(18795160-18795328)
chr1 (490-656)||(34381690-34381859)
chr1 (492-569)||(21550933-21551010)
chr1 (595-649)||(8247630-8247684)
chr1 (549-620)||(15416975-15417047)
chr1 (551-638)||(25266329-25266417)
chr1 (622-656)||(25494454-25494488)
chr1 (520-603)||(12810334-12810418)
chr1 (537-648)||(18300977-18301089)
chr1 (622-650)||(23519740-23519768)
chr1 (622-650)||(23521701-23521729)
[»] scaffold1149 (1 HSPs)
scaffold1149 (448-649)||(1726-1926)
[»] scaffold0065 (2 HSPs)
scaffold0065 (438-595)||(12032-12189)
scaffold0065 (578-656)||(12315-12393)
[»] scaffold0337 (2 HSPs)
scaffold0337 (451-595)||(1609-1753)
scaffold0337 (578-649)||(1879-1950)
[»] chr6 (16 HSPs)
chr6 (451-595)||(24507612-24507756)
chr6 (537-646)||(17860424-17860534)
chr6 (496-603)||(14768287-14768395)
chr6 (505-651)||(9943121-9943267)
chr6 (578-649)||(24507415-24507486)
chr6 (490-647)||(26512753-26512910)
chr6 (490-647)||(26517869-26518026)
chr6 (490-655)||(32930440-32930605)
chr6 (519-656)||(16387221-16387352)
chr6 (595-648)||(15998599-15998652)
chr6 (519-606)||(13759467-13759555)
chr6 (487-587)||(13835580-13835680)
chr6 (487-528)||(9396694-9396735)
chr6 (487-647)||(14924393-14924553)
chr6 (519-587)||(13830870-13830938)
chr6 (550-649)||(16439501-16439599)
[»] scaffold0043 (1 HSPs)
scaffold0043 (487-606)||(58724-58844)
[»] scaffold0190 (1 HSPs)
scaffold0190 (490-620)||(11699-11830)
[»] scaffold0185 (1 HSPs)
scaffold0185 (487-651)||(1422-1586)
[»] scaffold0188 (1 HSPs)
scaffold0188 (571-657)||(26920-27007)
[»] scaffold0171 (1 HSPs)
scaffold0171 (537-655)||(21426-21545)
[»] scaffold1026 (1 HSPs)
scaffold1026 (441-655)||(1801-2013)
[»] scaffold0386 (2 HSPs)
scaffold0386 (578-656)||(13037-13116)
scaffold0386 (551-656)||(8675-8781)
[»] scaffold0011 (1 HSPs)
scaffold0011 (511-656)||(228152-228296)


Alignment Details
Target: chr3 (Bit Score: 461; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 105 - 656
Target Start/End: Original strand, 28422050 - 28422601
Alignment:
Q  105 gaggacaagaggtgcaaaccaatttcagtttacttatagagcatcaaaagtcaccaaaacattttttcgatctctaacaatagctaacaaacaccatgat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28422050 gaggacaagaggtgcaaaccaatttcagtttacttatagagcatcaaaagtcaccaaaacattttttcgatctctaacaatagctaacaaacaccatgat 28422149  T
Q  205 aatcaatatctaaaattcattgtttatgattttgggannnnnnnaaataactctaattgtgatgaattggttgattgattatgaaattagaaatataaaa 304  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28422150 aatcaatatctaaaattcattgtttatgattttgggatttttttaaataactctaattgtgatgaattggttgattgattatgaaattagaaatataaaa 28422249  T
Q  305 aatatattcgtattatgaannnnnnnnnnnnnnnnnnattgcctccttactctttgattactatttggtttcacaggtctacttttgtttgaacttcaac 404  Q
    |||||||| ||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28422250 aatatatttgtattatgaattttttttcgagttttttattgcctccttactctttgattactatttggtttcacaggtctacttttgtttgaacttcaac 28422349  T
Q  405 tattactagaaatttaagtatgttattatgaaaattgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaagga 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28422350 tattactagaaatttaagtatgttattatgaaaattgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaagga 28422449  T
Q  505 aaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatctaaatcatgcaac 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28422450 aaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgttttcattcgaatcattgtaattcacttttatctaaatcatgcaac 28422549  T
Q  605 tcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  28422550 tcaattggtgttttgaatgttttgtagtgagaaatcatgtagatcgacaaat 28422601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 487 - 655
Target Start/End: Original strand, 11474825 - 11474994
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||| || |||||||||| ||||||  ||| |||| | |||  | |||||||||| |||||||||| |||| |||||| || |||||||||| ||    
T  11474825 ttctttgcacttaaaggaaaattggaagtcgtttaaaggactagtcaatggtttgaggaactttttgtattattttcattcgactcgttgtaattcaatt 11474924  T
Q  587 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    ||||| ||||||||||||||  ||  ||||||||| | |||| |||||||||||||||||||||||||||    
T  11474925 ttatcctaaatcatgcaacttcatatgtgttttgagtcttttttagtgagaaatcatgtaaatcggcaaa 11474994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 28421957 - 28422018
Alignment:
Q  11 cagagaccttatatatcagaaatggcatcttaagaccaccacctatcatttgtaggcaccgg 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28421957 cagagaccttatatatcagaaatggcatcttaagaccaccacctatcatttgtaggcaccgg 28422018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 496 - 651
Target Start/End: Original strand, 18474159 - 18474313
Alignment:
Q  496 tttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaa 594  Q
    |||||||  |||||||||||||||||||||| || ||  | |||||||||| |  |||||||| ||| |||||| ||||||||||||||| |||| ||||    
T  18474159 tttgaagacaaattagaagtcaattagaggatttatcaatcgtttgaggaactgattgtattg-tttcattcgattcattgtaattcactgttatcctaa 18474257  T
Q  595 atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 651  Q
    |||||||||||| || |||||||||| | ||||  ||||||||||||||||||||||    
T  18474258 atcatgcaactccataggtgttttgagtctttt-cagtgagaaatcatgtaaatcgg 18474313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 489 - 620
Target Start/End: Complemental strand, 8402684 - 8402552
Alignment:
Q  489 ctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttt 588  Q
    ||||||||||||||| |||| ||| || | ||||||||||||||  | ||||||||||   ||||||||||||| |||||| || |||||||||| ||||    
T  8402684 ctttgcatttgaaggcaaataagatgtaatttagaggagttgtcaatggtttgaggaacaatttgtattgttttcattcgagtcgttgtaattcattttt 8402585  T
Q  589 atc-taaatcatgcaactcaattggtgttttga 620  Q
    ||| ||||||||||||||| || ||||||||||    
T  8402584 atcttaaatcatgcaactccataggtgttttga 8402552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 520 - 649
Target Start/End: Original strand, 13911277 - 13911407
Alignment:
Q  520 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgtttt 618  Q
    |||| ||||||||  | ||||||||||  | | |||||||||| | | |||||||||||||||||||||||| || |||||||||||  ||  |||||||    
T  13911277 tagaagagttgtcaatggtttgaggaacatatggtattgttttcacttgaatcattgtaattcacttttatcctagatcatgcaacttcatatgtgtttt 13911376  T
Q  619 gaatgttttgtagtgagaaatcatgtaaatc 649  Q
     | ||||||||||||||||||||||||||||    
T  13911377 tagtgttttgtagtgagaaatcatgtaaatc 13911407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 490 - 605
Target Start/End: Complemental strand, 21829265 - 21829149
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||  | ||||||||||  ||||||||| |||| ||| || || |||||||||| |||||    
T  21829265 tttgcatttgaaggaaaataagaggtcatttagaggagttgtcaatggtttgaggaacattttgtattattttcatttgagtcgttgtaattcagtttta 21829166  T
Q  590 t-ctaaatcatgcaact 605  Q
    | ||||||||| |||||    
T  21829165 tcctaaatcatacaact 21829149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 490 - 649
Target Start/End: Complemental strand, 26387977 - 26387818
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    |||||||||||||| ||||||||||| |||||||| |||||||  | ||||||| ||  ||||||||| |||| ||| |  || | |||||| | |||||    
T  26387977 tttgcatttgaaggcaaattagaagtaaattagagtagttgtcaatggtttgagaaacgttttgtattcttttcatttgtgtcgtagtaattaagtttta 26387878  T
Q  590 t-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    | |||||||||||||||| || | |||||||| | |||| || ||||||||||||||||||    
T  26387877 tcctaaatcatgcaactccatagatgttttgagtctttt-taatgagaaatcatgtaaatc 26387818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 505 - 605
Target Start/End: Original strand, 26297746 - 26297847
Alignment:
Q  505 aaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaa 603  Q
    ||||||||||||| |||||||||||||   | ||||||| || ||||| ||||||||| |||||| || |||||||||| |||||| |||||||||||||    
T  26297746 aaattagaagtcagttagaggagttgttaatggtttgagaaactttttatattgttttcattcgagtcgttgtaattcaattttatcctaaatcatgcaa 26297845  T
Q  604 ct 605  Q
    ||    
T  26297846 ct 26297847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 576 - 648
Target Start/End: Original strand, 27415236 - 27415309
Alignment:
Q  576 gtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaat 648  Q
    |||||||||||||||| ||||||||||||||  || |||||||||| ||||||||||| |||||||||||||||    
T  27415236 gtaattcacttttatcgtaaatcatgcaacttcataggtgttttgagtgttttgtagtaagaaatcatgtaaat 27415309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 464 - 650
Target Start/End: Complemental strand, 33914721 - 33914539
Alignment:
Q  464 tttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgttttt 563  Q
    ||||||||||| |||||||    |||||||||||| |||  |||| ||| |  | ||| ||||||||||    ||||||||||  | |||||||||||||    
T  33914721 tttttactatgtttttagtacttttctttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaacatattgtattgttttt 33914622  T
Q  564 attcgaatcattgtaattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcg 650  Q
    | |||| || ||||||||||| ||   | |||||||||||||| ||    ||||||| |||||||||||||||||||||||||||||    
T  33914621 actcgagtcgttgtaattcacgttatcccaaatcatgcaactctat----gttttgagtgttttgtagtgagaaatcatgtaaatcg 33914539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 476 - 591
Target Start/End: Complemental strand, 19546125 - 19546015
Alignment:
Q  476 ttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcatt 575  Q
    |||||||||| ||||||||||||||||| |||||||||||||||     |  || ||  | |||||||||| || |||||||||||||||| || |||||    
T  19546125 ttttagtgtatttctttgcatttgaaggcaaattagaagtcaat-----ggtttatcaatggtttgaggaacttattgtattgtttttatttgagtcatt 19546031  T
Q  576 gtaattcacttttatc 591  Q
    |||||||||| |||||    
T  19546030 gtaattcactattatc 19546015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 487 - 606
Target Start/End: Original strand, 25188737 - 25188856
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||  |||| ||| |||| |||||||| ||| |  | ||||| ||||| ||||  ||| || | |||||||||||||||||||||||    
T  25188737 ttctttgcatttgaagacaaataagaggtcatttagaggaattgacaatggtttgtggaatgttttaaatt-ttctcattcgaatcattgtaattcactt 25188835  T
Q  587 ttatc-taaatcatgcaactc 606  Q
    ||||| |||||||||||||||    
T  25188836 ttatcataaatcatgcaactc 25188856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 554 - 650
Target Start/End: Complemental strand, 2729687 - 2729590
Alignment:
Q  554 tattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcg 650  Q
    ||||||||| | |||| || |||||||||| ||||||| |||| |||||||||  ||  ||||||||| ||||||||||||| ||||| |||||||||    
T  2729687 tattgttttcactcgagtccttgtaattcatttttatcctaaaccatgcaacttcatatgtgttttgagtgttttgtagtgataaatcttgtaaatcg 2729590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 649
Target Start/End: Original strand, 12573319 - 12573432
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 635  Q
    |||||||||||  ||||||||||||| | ||||  | |||||||||| ||||||| || |||||||| |||  | ||| |||| | ||||||||||||||    
T  12573319 gtttgaggaatgctttgtattgttttcactcgagacgttgtaattcatttttatcctagatcatgcagctccgtaggtttttttagtgttttgtagtgag 12573418  T
Q  636 aaatcatgtaaatc 649  Q
     |||||||||||||    
T  12573419 gaatcatgtaaatc 12573432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 649
Target Start/End: Original strand, 13549783 - 13549896
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 635  Q
    |||||||||||  ||||||||||||| | ||||  | |||||||||| ||||||| || |||||||| |||  | ||| |||| | ||||||||||||||    
T  13549783 gtttgaggaatgctttgtattgttttcactcgagacgttgtaattcatttttatcctagatcatgcagctccgtaggtttttttagtgttttgtagtgag 13549882  T
Q  636 aaatcatgtaaatc 649  Q
     |||||||||||||    
T  13549883 gaatcatgtaaatc 13549896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 649
Target Start/End: Complemental strand, 19219260 - 19219184
Alignment:
Q  574 ttgtaattcacttttatctaaa-tcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||||||||||| ||| ||||||||| | ||   |||||||| |||||||||||||| |||||||||||||    
T  19219260 ttgtaattcacttttatccaaaatcatgcaacaccataaatgttttgagtgttttgtagtgaggaatcatgtaaatc 19219184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 646
Target Start/End: Original strand, 21017856 - 21018016
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    |||||||||||||||| ||||| ||| |  | |||||||||||| |  |  |||||||||  | || |||| |||| |  ||| || |||||||||| ||    
T  21017856 ttctttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgaggaacatattatattattttcaaccgagtcgttgtaattcagtt 21017955  T
Q  587 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaa 646  Q
    ||||| || |||||||||||| |   ||||||||| ||||||||| |||||||||||||||    
T  21017956 ttatcctagatcatgcaactctaaatgtgttttgagtgttttgtattgagaaatcatgtaa 21018016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 538 - 648
Target Start/End: Complemental strand, 30493349 - 30493238
Alignment:
Q  538 tttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgag- 635  Q
    |||||| || ||||||||||||||| |||||| || ||||| || | |||||| ||||||||||||| || || |||||||||| | |||| |||||||     
T  30493349 tttgagaaactttttgtattgttttcattcgagtcgttgtagtttagttttatcctaaatcatgcaaatccatgggtgttttgagtctttt-tagtgaga 30493251  T
Q  636 aaatcatgtaaat 648  Q
    |||||||||||||    
T  30493250 aaatcatgtaaat 30493238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 575 - 649
Target Start/End: Original strand, 11521206 - 11521281
Alignment:
Q  575 tgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    ||||||||| ||||||| || ||||||||| || || | |||||||| |||||||||||||| |||||||||||||    
T  11521206 tgtaattcagttttatcctagatcatgcaagtccatagttgttttgagtgttttgtagtgaggaatcatgtaaatc 11521281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 549 - 655
Target Start/End: Original strand, 33577775 - 33577881
Alignment:
Q  549 ttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 647  Q
    |||||||||||||||||| || ||||||||||||| || ||| ||||||||||||||   ||||||| ||||| | |||| ||  || ||| ||||||||    
T  33577775 ttttgtattgtttttatttgattcattgtaattcatttatatcctaaatcatgcaacctcattggtggtttgagtctttt-taaagaaaaaacatgtaaa 33577873  T
Q  648 tcggcaaa 655  Q
    ||||||||    
T  33577874 tcggcaaa 33577881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 542 - 619
Target Start/End: Complemental strand, 5632614 - 5632536
Alignment:
Q  542 aggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttg 619  Q
    ||||| ||||||| ||||||| ||| || || |||||||||||||||||| | ||||||||||||| || |||||||||    
T  5632614 aggaagtttttgtgttgttttcatttgattcgttgtaattcacttttatcttgaatcatgcaactccataggtgttttg 5632536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 605
Target Start/End: Complemental strand, 27374537 - 27374468
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaact 605  Q
    |||| ||||| ||||||||||||||| |||||| ||||| |||| || |||||| |||||||||||||||    
T  27374537 gtttaaggaagtttttgtattgttttcattcgagtcattataatccagttttatcctaaatcatgcaact 27374468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 492 - 588
Target Start/End: Original strand, 19285084 - 19285179
Alignment:
Q  492 tgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttt 588  Q
    ||||||||| || ||||||||||||| ||||||||||||||  | || ||| |||  ||||||||| |||| |||||| || |||||||||| ||||    
T  19285084 tgcatttgagggtaaattagaagtcatttagaggagttgtcaatagtatga-gaaaattttgtattattttcattcgagtcgttgtaattcaatttt 19285179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 622 - 655
Target Start/End: Complemental strand, 5632542 - 5632509
Alignment:
Q  622 tgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    ||||||||||||||||||||||||||||| ||||    
T  5632542 tgttttgtagtgagaaatcatgtaaatcgacaaa 5632509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 538 - 630
Target Start/End: Complemental strand, 23007150 - 23007057
Alignment:
Q  538 tttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgta 630  Q
    |||||||||| | ||||||||||||   |||| ||||| ||| |||||||||| ||||||||| |||||| || | |||||||| |||| ||||    
T  23007150 tttgaggaatatattgtattgttttccctcgagtcattataaatcacttttatcctaaatcatacaactccatagatgttttgagtgttatgta 23007057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 655
Target Start/End: Complemental strand, 23908354 - 23908238
Alignment:
Q  539 ttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaa 637  Q
    ||||||||  |||||||||||||| |||||| || ||||||||| ||||||| | |||| |||||| |  || |||| ||||| |  ||| ||| |||||    
T  23908354 ttgaggaacattttgtattgttttcattcgattcgttgtaattcccttttatccaaaataatgcaatttcataggtgctttgagt-ctttctagggagaa 23908256  T
Q  638 atcatgtaaatcggcaaa 655  Q
    |||||||||| |||||||    
T  23908255 atcatgtaaagcggcaaa 23908238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 619
Target Start/End: Complemental strand, 25919534 - 25919465
Alignment:
Q  551 ttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttg 619  Q
    |||| ||||||||| | || |||| ||||||||||||||| |||||||||||||||| || | |||||||    
T  25919534 ttgtgttgtttttacttgagtcatcgtaattcacttttatcctaaatcatgcaactccatagatgttttg 25919465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 649
Target Start/End: Complemental strand, 1475384 - 1475252
Alignment:
Q  519 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgt-t 616  Q
    ||||||||||| ||  | ||||||||||| | ||||||| |||| | |||| || |||||||||| || ||| ||| |||||||||||| || ||| | |    
T  1475384 ttagaggagttttcaatggtttgaggaatatattgtattattttcactcgagtcgttgtaattcaattatatcctagatcatgcaactccatgggtatat 1475285  T
Q  617 ttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||| ||||| |||||||  ||| |||||||||    
T  1475284 ttgagtgtttcgtagtgaagaataatgtaaatc 1475252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 440 - 655
Target Start/End: Original strand, 30405528 - 30405741
Alignment:
Q  440 tgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtt 539  Q
    ||||||| ||||||||||| || |||||| ||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||   | |||    
T  30405528 tgatgatggaataacatatgatattttttgctatgtttctagtgtaattctttgcatttgaaggtaaattagaagtcaattagaggagttgttaatggtt 30405627  T
Q  540 tgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaat 639  Q
    ||||||| ||||||||||||||||||| || |||||||||||||||||   ||||| |||||||||| || ||||||||||  ||||| |||||||||||    
T  30405628 tgaggaactttttgtattgtttttatttgactcattgtaattcactttatcctaaaccatgcaactccataggtgttttga--gttttttagtgagaaat 30405725  T
Q  640 catgtaaatcggcaaa 655  Q
    ||||||||||||||||    
T  30405726 catgtaaatcggcaaa 30405741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 476 - 656
Target Start/End: Complemental strand, 7372709 - 7372531
Alignment:
Q  476 ttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcatt 575  Q
    |||||||||||||||||||||||||||| |||||||||    ||||||||||||||| || |||||| ||| ||||||||||||||| |||||| || ||    
T  7372709 ttttagtgtaattctttgcatttgaaggtaaattagaa----attagaggagttgtcattggtttgatgaactttttgtattgttttcattcgagtcgtt 7372614  T
Q  576 gtaattcacttttat--ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    |||||||| ||||||  | |||||||||||||  || |||||||| | |||||| |||||||||||| |||||||| ||||||    
T  7372613 gtaattcaattttatcacgaaatcatgcaacttcataggtgttttcagtgttttttagtgagaaatcttgtaaatcagcaaat 7372531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 469 - 649
Target Start/End: Complemental strand, 7361787 - 7361605
Alignment:
Q  469 actatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcg 568  Q
    |||||| || |||||||||||||||||||| |||| |||||| || || ||||||||||||||| || ||| || ||| |||||||| |||||| |||||    
T  7361787 actatgtttctagtgtaattctttgcattttaaggcaaattaaaaatctattagaggagttgtcattggttcgatgaactttttgtaatgttttcattcg 7361688  T
Q  569 aatcattgtaattcacttttat--ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    | ||||||||| ||||||||||  ||||||||||||||||  | | |||||||| ||||||||||||| |||| |||||||||    
T  7361687 agtcattgtaactcacttttatcactaaatcatgcaactccgtagatgttttgagtgttttgtagtgaaaaattatgtaaatc 7361605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 439 - 606
Target Start/End: Original strand, 4828722 - 4828890
Alignment:
Q  439 ttgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgt 538  Q
    |||||||| ||||||||||| || |||||  || |  ||||||||||||| ||||||||||||||||||||  ||||| ||| |||||||| ||  | ||    
T  4828722 ttgatgatggaataacatatgatatttttagctttatttttagtgtaattatttgcatttgaaggaaaattgaaagtctatttgaggagttttcaatggt 4828821  T
Q  539 ttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactc 606  Q
    |||||||| |||||||||| |||||| |||| ||||||||||| |||||||| ||||||||||||||||    
T  4828822 ttgaggaactttttgtattctttttaatcgattcattgtaatttacttttatcctaaatcatgcaactc 4828890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 490 - 651
Target Start/End: Complemental strand, 17881631 - 17881470
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    |||||||||||||| ||||||||||||| ||| ||||||||||  |  ||| ||||| |||||||||| |||| |||||||||||||||||| | |||||    
T  17881631 tttgcatttgaaggcaaattagaagtcatttaaaggagttgtcaatgattttaggaactttttgtattattttcattcgaatcattgtaatttaatttta 17881532  T
Q  590 tc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 651  Q
    || |||||||||||||| ||| ||| |||||| | |||| ||||||||| |||||||||||||    
T  17881531 tcataaatcatgcaacttaataggtattttgagtctttt-tagtgagaagtcatgtaaatcgg 17881470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 439 - 619
Target Start/End: Original strand, 37144851 - 37145032
Alignment:
Q  439 ttgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgt 538  Q
    |||||||| ||||||||||| |||| ||| |||||| ||||||| |||||||||| ||||||||| ||||| |||||||||||||||||||||| ||  |    
T  37144851 ttgatgatggaataacatatgatgtatttaactatgtttttagtataattctttggatttgaaggcaaatttgaagtcaattagaggagttgtcattgtt 37144950  T
Q  539 ttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttg 619  Q
    ||||  || |||||||||| |||| |||| | || |||||||  | |||||| ||||||||||||||||  | |||||||||    
T  37144951 ttgaaaaactttttgtattattttcattcaagtcgttgtaatatatttttatcctaaatcatgcaactccgtaggtgttttg 37145032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 491 - 655
Target Start/End: Complemental strand, 24597135 - 24596971
Alignment:
Q  491 ttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat 590  Q
    ||||||||||||||||||||||||||||||||| ||||||||  | |||||| | | |||||| |||||||| ||  || || |||||||||| ||||||    
T  24597135 ttgcatttgaaggaaaattagaagtcaattagaagagttgtcaatggtttgatggagtttttgcattgttttgatctgagtcgttgtaattcaattttat 24597036  T
Q  591 -ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
     ||||||||||||||||  | |||||||| | | |||| |||||||||||| ||||||||||||||    
T  24597035 cctaaatcatgcaactccgtaggtgttttaagtctttt-tagtgagaaatcgtgtaaatcggcaaa 24596971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 491 - 648
Target Start/End: Complemental strand, 4977952 - 4977794
Alignment:
Q  491 ttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat 590  Q
    |||||||| |||| |||||| |||||||||| |||||||||| || |||||| |||||||||||||| || | |||| | || |||||||||||||||||    
T  4977952 ttgcatttaaaggtaaattataagtcaattaaaggagttgtcattggtttgaagaattttttgtatttttatcattcaagtcgttgtaattcacttttat 4977853  T
Q  591 -ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaat 648  Q
     |||||| ||||||||  || |  ||| |||  | ||| ||||||||||||||||||||    
T  4977852 cctaaattatgcaacttcatagaggttgtgagcggtttatagtgagaaatcatgtaaat 4977794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 519 - 649
Target Start/End: Complemental strand, 1255317 - 1255186
Alignment:
Q  519 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttt 617  Q
    ||||||||||||||  | |||||||||||   |||||||||||| | |||| ||||||||||||| |||||| |||||||||||||||  || |||||||    
T  1255317 ttagaggagttgtcaatggtttgaggaataaattgtattgttttcactcgagtcattgtaattcatttttatcctaaatcatgcaacttcataggtgttt 1255218  T
Q  618 tgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    ||| ||||||||| ||| |||| || ||||||    
T  1255217 tgagtgttttgtaatgaaaaattatttaaatc 1255186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 574 - 656
Target Start/End: Original strand, 7142164 - 7142247
Alignment:
Q  574 ttgtaattcacttttatctaa-atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    |||||||||||||||||| || |||||||||||| || |||||||| | ||||||||||||||||||||||||||||| |||||    
T  7142164 ttgtaattcacttttatccaagatcatgcaactccataggtgttttaagtgttttgtagtgagaaatcatgtaaatcgacaaat 7142247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 490 - 655
Target Start/End: Complemental strand, 3269098 - 3268933
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    |||||||||||| |||| | ||| || | |||||||||||||| || ||||||| ||  ||||||||||||||  || || |  ||||||||||||||||    
T  3269098 tttgcatttgaaagaaactaagaggttatttagaggagttgtcattggtttgagtaacattttgtattgttttcgtttgagttgttgtaattcactttta 3268999  T
Q  590 t-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    | |||||||||||||||   |  ||||||| | | |||| |||||||||||||||||||||||||||    
T  3268998 tcctaaatcatgcaacttcgtatgtgttttaagtctttt-tagtgagaaatcatgtaaatcggcaaa 3268933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 487 - 620
Target Start/End: Original strand, 18496544 - 18496678
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    |||||||||||||||||||||  ||  |  | |||||| |||||||  |||||||||||| | |||| |||||||| |||||||||||||||||||| ||    
T  18496544 ttctttgcatttgaaggaaaacaagttgcaatttagagaagttgtcaattgtttgaggaactatttgaattgttttcattcgaatcattgtaattcattt 18496643  T
Q  587 ttat-ctaaatcatgcaactcaattggtgttttga 620  Q
    |||| ||||||||||| |||  || ||||||||||    
T  18496644 ttatcctaaatcatgcgacttcataggtgttttga 18496678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 491 - 591
Target Start/End: Original strand, 9800579 - 9800679
Alignment:
Q  491 ttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat 590  Q
    |||||||||||||||||||| ||||||||||||||| |||||  | ||||||||||  ||||||||| |||| | |||| || |||||||| ||||||||    
T  9800579 ttgcatttgaaggaaaattataagtcaattagaggaattgtcactagtttgaggaacgttttgtatttttttcactcgagtcgttgtaatttacttttat 9800678  T
Q  591 c 591  Q
    |    
T  9800679 c 9800679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 551 - 650
Target Start/End: Original strand, 23124943 - 23125043
Alignment:
Q  551 ttgtattgtttttattcgaatcattgtaattcacttttatctaaa-tcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||||| | |||| || ||||||||||| |||||| ||| |||| |||||| || |||||||||| |||||| |||||||||||||||||||||    
T  23124943 ttgtattgttttcactcgagtcgttgtaattcacatttatccaaaatcatacaactctataggtgttttgagtgttttctagtgagaaatcatgtaaatc 23125042  T
Q  650 g 650  Q
    |    
T  23125043 g 23125043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 440 - 591
Target Start/End: Original strand, 9755732 - 9755883
Alignment:
Q  440 tgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtt 539  Q
    |||||||  |||||||||| || ||| |  ||||| ||||||| || ||  ||||||||||||| |||||| ||||||||||||||| |||||  | |||    
T  9755732 tgatgatgaaataacatatgatatttgtagctatgtttttagtatattttcttgcatttgaaggcaaattataagtcaattagaggaattgtcactagtt 9755831  T
Q  540 tgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc 591  Q
    |||||||  ||||||||| |||| | |||| || |||||||| |||||||||    
T  9755832 tgaggaacgttttgtatttttttcactcgagtcgttgtaatttacttttatc 9755883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 550 - 655
Target Start/End: Complemental strand, 5312858 - 5312753
Alignment:
Q  550 tttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaat 648  Q
    ||||||||||||| ||| || || |||||||||||||||||| || | |||||||||| || |||||||||| | |||| |||||| |||||||||||||    
T  5312858 tttgtattgttttcatttgagtcgttgtaattcacttttatcttatagcatgcaactccataggtgttttgagtctttt-tagtgataaatcatgtaaat 5312760  T
Q  649 cggcaaa 655  Q
    |||||||    
T  5312759 cggcaaa 5312753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 487 - 655
Target Start/End: Original strand, 29544498 - 29544667
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||  |||| ||| |  | ||||||||||||||  | ||||||||||  | |||||||||||| | |||| || |||||||||||||    
T  29544498 ttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaacatattgtattgttttcactcgagtcgttgtaattcactt 29544597  T
Q  587 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    || | ||||||  ||||| || ||  ||||||||| |||||| |||| || |||||||||||||| ||||    
T  29544598 ttctcctaaattgtgcaattccataagtgttttgagtgttttttagtaaggaatcatgtaaatcgacaaa 29544667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 649
Target Start/End: Original strand, 7815389 - 7815465
Alignment:
Q  574 ttgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||| |||||| |||||||||||||||  || |||||||||| |||||||||||||  |||||||||||||    
T  7815389 ttgtaattcagttttattctaaatcatgcaacttcataggtgttttgagtgttttgtagtgatgaatcatgtaaatc 7815465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 439 - 579
Target Start/End: Original strand, 8606001 - 8606140
Alignment:
Q  439 ttgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgt 538  Q
    |||||||| ||||||||||| |||||||   ||||| |||||||    || ||||| ||| |||||||||||||| ||||||||||||||| ||  | ||    
T  8606001 ttgatgatggaataacatatgatgttttag-ctatgtttttagttattttatttgcgtttaaaggaaaattagaaatcaattagaggagttttcaatggt 8606099  T
Q  539 ttgaggaattttttgtattgtttttattcgaatcattgtaa 579  Q
    |||||||| |||| | |||||||| |||||| || ||||||    
T  8606100 ttgaggaacttttggcattgttttcattcgagtcgttgtaa 8606140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 519 - 648
Target Start/End: Original strand, 1074463 - 1074593
Alignment:
Q  519 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttt 617  Q
    ||||||||||||||  | ||||||||||    ||||||| |||| |||||| |||||||||||  |||||||| ||||| || |||||| ||  ||||||    
T  1074463 ttagaggagttgtcaatggtttgaggaaccaattgtattattttcattcgattcattgtaatttgcttttatcctaaattatacaactccataagtgttt 1074562  T
Q  618 tgaatgttttgtagtgagaaatcatgtaaat 648  Q
    ||  | |||| ||||||||||||||||||||    
T  1074563 tgtgtcttttttagtgagaaatcatgtaaat 1074593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 520 - 651
Target Start/End: Complemental strand, 12358864 - 12358733
Alignment:
Q  520 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgtttt 618  Q
    |||||||||||||   |||||||| ||| ||||||||| || | ||| || || |||||||||| |||||| ||||||||| |||||  || ||||||||    
T  12358864 tagaggagttgtccaatgtttgagaaatattttgtatttttctcatttgagtcgttgtaattcatttttatcctaaatcattcaacttcataggtgtttt 12358765  T
Q  619 gaatgttttgtagtgagaaatcatgtaaatcgg 651  Q
    || | |||| ||||||||||| || ||||||||    
T  12358764 gagtctttt-tagtgagaaataatataaatcgg 12358733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 524 - 655
Target Start/End: Complemental strand, 20461746 - 20461615
Alignment:
Q  524 ggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaat 622  Q
    |||||||||  | ||||||||||   ||||||||||||| |||||| || |||||| ||| ||| ||| ||||||| |||||   || ||||||| || |    
T  20461746 ggagttgtcaatggtttgaggaacaatttgtattgttttcattcgagtcgttgtaactcaatttcatcctaaatcacgcaacatgataggtgtttcgagt 20461647  T
Q  623 gttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
     |||| |||||||||||||||||||||||||||    
T  20461646 ctttt-tagtgagaaatcatgtaaatcggcaaa 20461615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 642
Target Start/End: Complemental strand, 22067939 - 22067784
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    |||||||||||||  |||| ||| |  | ||| ||||||||||  | ||||||||||  |  ||||||||||| | |||| ||||||||||||| |||||    
T  22067939 tttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaacataatgtattgttttcactcgagtcattgtaattcaatttta 22067840  T
Q  590 t-ctaaatcatgcaactcaattgg--tgttttgaatgttttgtagtgagaaatcat 642  Q
    | ||| |||||||||||| || ||  | |||||| |||||||||||||| ||||||    
T  22067839 tcctagatcatgcaactccataggtattttttgagtgttttgtagtgaggaatcat 22067784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 649
Target Start/End: Original strand, 10292797 - 10292896
Alignment:
Q  551 ttgtattgtttttattcgaatcattgtaattcacttttatctaa-atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    ||||||| |||| | |||| || |||||||||| ||||||| || |||||||||| | || ||||||| || | |||||||||||| |||||||||||||    
T  10292797 ttgtatttttttcaatcgagtcgttgtaattcagttttatccaagatcatgcaacaccataggtgtttagactattttgtagtgaggaatcatgtaaatc 10292896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 595 - 649
Target Start/End: Original strand, 21471884 - 21471938
Alignment:
Q  595 atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    ||||||||| || || |||||||||| |||||||||||||| |||||||||||||    
T  21471884 atcatgcaattccataggtgttttgagtgttttgtagtgaggaatcatgtaaatc 21471938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 655
Target Start/End: Complemental strand, 8309103 - 8308999
Alignment:
Q  551 ttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||||| ||| || ||||||| ||| | ||||||| ||||||||||||||| ||   |||||||| | |||| |||| ||||||||||||||||    
T  8309103 ttgtattgttttcatttgagtcattgtgatttagttttatcctaaatcatgcaactccatacatgttttgagtctttt-tagtaagaaatcatgtaaatc 8309005  T
Q  650 ggcaaa 655  Q
     |||||    
T  8309004 agcaaa 8308999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 517 - 656
Target Start/End: Complemental strand, 20470916 - 20470776
Alignment:
Q  517 aattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgt 615  Q
    ||||||||||||||||  | ||||||||||  | || ||||||||| | |  | || |||||||||||||| | | ||||||||||| ||  || | |||    
T  20470916 aattagaggagttgtcaatggtttgaggaacatattatattgttttcacttaagtcgttgtaattcactttcagcctaaatcatgcatctgcatagctgt 20470817  T
Q  616 tttgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    ||||| |||||| |||||| ||| ||||||||||| |||||    
T  20470816 tttgagtgttttatagtgataaagcatgtaaatcgacaaat 20470776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 656
Target Start/End: Complemental strand, 9761464 - 9761381
Alignment:
Q  574 ttgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    |||||||||||||||||| || || |||||| || || |||||||||| | |||  |||||| ||||||||||||||| |||||    
T  9761464 ttgtaattcacttttatcctagattatgcaattccataggtgttttgagtttttaatagtgataaatcatgtaaatcgacaaat 9761381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 656
Target Start/End: Complemental strand, 9801923 - 9801840
Alignment:
Q  574 ttgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    |||||||||||||||||| || || |||||| || || |||||||||| | |||  |||||| ||||||||||||||| |||||    
T  9801923 ttgtaattcacttttatcctagattatgcaattccataggtgttttgagtttttaatagtgataaatcatgtaaatcgacaaat 9801840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 503
Target Start/End: Complemental strand, 21543126 - 21543071
Alignment:
Q  448 gaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaagg 503  Q
    ||||||||||| ||||||||  ||||| ||||||||||||| ||| ||||||||||    
T  21543126 gaataacatatgatgtttttagctatgtttttagtgtaattattttcatttgaagg 21543071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 529
Target Start/End: Complemental strand, 16536710 - 16536668
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagtt 529  Q
    ||||||||||||||||  ||||||||||||| |||||||||||    
T  16536710 ttctttgcatttgaagacaaattagaagtcatttagaggagtt 16536668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 529
Target Start/End: Complemental strand, 16577408 - 16577366
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagtt 529  Q
    ||||||||||||||||  ||||||||||||| |||||||||||    
T  16577408 ttctttgcatttgaagacaaattagaagtcatttagaggagtt 16577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 529
Target Start/End: Original strand, 16588254 - 16588296
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagtt 529  Q
    ||||||||||||||||  ||||||||||||| |||||||||||    
T  16588254 ttctttgcatttgaagacaaattagaagtcatttagaggagtt 16588296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 487 - 529
Target Start/End: Original strand, 16628952 - 16628994
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagtt 529  Q
    ||||||||||||||||  ||||||||||||| |||||||||||    
T  16628952 ttctttgcatttgaagacaaattagaagtcatttagaggagtt 16628994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 605
Target Start/End: Complemental strand, 21545885 - 21545816
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaact 605  Q
    ||||||||||  | |||||||||||| | |||| || |||||| |||||||||| |||||||||||||||    
T  21545885 gtttgaggaacatattgtattgttttcactcgagtcgttgtaactcacttttatcctaaatcatgcaact 21545816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 1e-52; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 476 - 648
Target Start/End: Complemental strand, 24584871 - 24584698
Alignment:
Q  476 ttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcatt 575  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |  |||||||||||||||||||||||||| |||||| |||||    
T  24584871 ttttagtataattctttgtatttgaaggcaaattagaagtcaattagaggagttgtcatcggtttgaggaattttttgtattgttttcattcgagtcatt 24584772  T
Q  576 gtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaat 648  Q
    |||||||| ||||||| ||||||||||||||| || ||| |||||| | ||||||||||||||||| |||||||    
T  24584771 gtaattcatttttatcataaatcatgcaactctataggtattttgagttttttgtagtgagaaatcttgtaaat 24584698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 487 - 655
Target Start/End: Original strand, 10866967 - 10867135
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||| ||| ||||| |||| ||| |||| |||||| |||||||  | ||||||||||| |||||||||||||| ||| || || |||||||||| ||    
T  10866967 ttctttgaattcgaaggcaaataagaggtcatttagagtagttgtcaatggtttgaggaatattttgtattgttttcatttgagtcgttgtaattcagtt 10867066  T
Q  587 ttatct-aaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    |||||| |||||||||||||| |  |||| ||||||| |||| |||||||||||||||||| ||||||||    
T  10867067 ttatctcaaatcatgcaactccaaaggtgctttgaatctttt-tagtgagaaatcatgtaagtcggcaaa 10867135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 495 - 655
Target Start/End: Complemental strand, 14424940 - 14424780
Alignment:
Q  495 atttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-cta 593  Q
    ||||||||||||||||||||| | |||||| ||| |||  | |||||||||| ||||| ||| ||||| |||||| || |||||||||| |||||| |||    
T  14424940 atttgaaggaaaattagaagtaatttagagaagtagtcaatggtttgaggaactttttatatggttttcattcgagtcgttgtaattcagttttatccta 14424841  T
Q  594 aatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    ||||||||||||| || |||||||| |   |||| |||||||||||||||||||||||||||    
T  14424840 aatcatgcaactccataggtgtttt-aggtttttttagtgagaaatcatgtaaatcggcaaa 14424780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 495 - 649
Target Start/End: Complemental strand, 30851227 - 30851073
Alignment:
Q  495 atttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-cta 593  Q
    ||||||||||||||||||||||| ||| | ||||||| | | |||||||||| ||||| |||| |||| ||||||||| ||||||||||  ||||| |||    
T  30851227 atttgaaggaaaattagaagtcatttataagagttgttgatggtttgaggaagtttttatattattttcattcgaatcgttgtaattcagatttatccta 30851128  T
Q  594 aatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||||||||| ||||||||| ||  | | |||||||||||| ||||||||    
T  30851127 aatcatgcaactcaataggtgttttggat-ctatctagtgagaaatcgtgtaaatc 30851073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 439 - 655
Target Start/End: Original strand, 11437350 - 11437566
Alignment:
Q  439 ttgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgt 538  Q
    |||||| | ||||||||| | ||||||||  |||||||||||||    ||||||| |||| |||| ||||| ||||||||||||||||||| ||  | ||    
T  11437350 ttgatgttggaataacatttgatgtttttacctatgcttttagttattttctttgtatttaaaggcaaattggaagtcaattagaggagttttcaatggt 11437449  T
Q  539 ttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaa 637  Q
    | || ||| ||||||| ||||||| |||||| || || ||||||| ||| ||| ||  ||||||||||| ||  || |||||| | |||| |||||||||    
T  11437450 tcgaagaaatttttgtgttgttttcattcgagtcgttataattcagtttcatcataggtcatgcaactccatatgtattttgagtctttt-tagtgagaa 11437548  T
Q  638 atcatgtaaatcggcaaa 655  Q
    ||||||||||||||||||    
T  11437549 atcatgtaaatcggcaaa 11437566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 487 - 655
Target Start/End: Original strand, 29291750 - 29291917
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    |||||| |||||||||| |||||||||||||  |||||||||| ||  | |||||||||||||||| |||| |||| ||| || || ||||||| || ||    
T  29291750 ttcttttcatttgaaggcaaattagaagtcatatagaggagttatcaatggtttgaggaattttttatatt-ttttcatttgagtcgttgtaatgcagtt 29291848  T
Q  587 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    |||| |||||||||||||||  ||  || |||||| | |||| |||| ||||||||||||||||||||||    
T  29291849 ttatcctaaatcatgcaactttataagtattttgagtctttt-tagtaagaaatcatgtaaatcggcaaa 29291917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 517 - 648
Target Start/End: Original strand, 32239296 - 32239428
Alignment:
Q  517 aattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatct-aaatcatgcaactcaattggtgt 615  Q
    ||||||||||||||||  | ||||||| ||  | |||||||||||||| | || || ||| ||||||||||||||| |||||||||||||| ||   |||    
T  32239296 aattagaggagttgtcaatggtttgagtaacatattgtattgtttttacttgagtcgttgcaattcacttttatcttaaatcatgcaactccataaatgt 32239395  T
Q  616 tttgaatgttttgtagtgagaaatcatgtaaat 648  Q
    ||||| ||||||||||||||||||| |||||||    
T  32239396 tttgagtgttttgtagtgagaaatcgtgtaaat 32239428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 490 - 655
Target Start/End: Original strand, 5153740 - 5153905
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    |||| ||||||||  ||||||||||| | ||||||||||||||  |  ||| || ||   |||||||| |||| |||||| ||||||||||||| |||||    
T  5153740 tttgtatttgaagataaattagaagttatttagaggagttgtcaatgattttagaaaaaatttgtattattttcattcgagtcattgtaattcagtttta 5153839  T
Q  590 tc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    || |||||||| |||||| || |||||||||| | |||| |||| ||||||||||||||| ||||||    
T  5153840 tcttaaatcattcaactcgataggtgttttgagtctttt-tagtaagaaatcatgtaaataggcaaa 5153905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 440 - 651
Target Start/End: Original strand, 30543695 - 30543904
Alignment:
Q  440 tgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtt 539  Q
    ||||||| ||| ||| ||| || |||||  ||||| ||||||| |  || |||||||||||||  |||||| |||| ||||||||||||| ||   ||||    
T  30543695 tgatgatggaaaaacttatgatatttttagctatgtttttagtatttttttttgcatttgaagacaaattaaaagttaattagaggagttctc-aatgtt 30543793  T
Q  540 tgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaa 638  Q
    ||| |||  |||||||||||||| ||| || |  ||||||||||||||||| ||||||||||||| |  || |||||||||| | |||| | ||||||||    
T  30543794 tgatgaa-cttttgtattgttttcatttgagttgttgtaattcacttttatcctaaatcatgcaattatataggtgttttgagtctttt-tggtgagaaa 30543891  T
Q  639 tcatgtaaatcgg 651  Q
    |||||||||||||    
T  30543892 tcatgtaaatcgg 30543904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 492 - 649
Target Start/End: Original strand, 31436463 - 31436620
Alignment:
Q  492 tgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat- 590  Q
    |||||||||||| |||| ||| || | ||||||||||||||  |  ||||||||||    | |||| |||| |||||| ||| ||||||| | ||||||     
T  31436463 tgcatttgaaggcaaataagatgtaatttagaggagttgtcaatgatttgaggaataaactatatttttttcattcgagtcagtgtaatttagttttatc 31436562  T
Q  591 ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||||||||  || |||||||||||| |||| |||||||||||||||||||||    
T  31436563 ctaaatcatgcaactacataggtgttttgaatctttt-tagtgagaaatcatgtaaatc 31436620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 487 - 619
Target Start/End: Original strand, 12956468 - 12956601
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||  |||| ||| |  | ||||||||||||||  | ||||||||||  | |||||||||||| | |||| |||| |||||||||||    
T  12956468 ttctttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaaatattgtattgttttcactcgagtcatcgtaattcactt 12956567  T
Q  587 ttat-ctaaatcatgcaactcaattggtgttttg 619  Q
    |||| |||||||||| ||||| || |||||||||    
T  12956568 ttatcctaaatcatgtaactctataggtgttttg 12956601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 495 - 599
Target Start/End: Complemental strand, 13583637 - 13583532
Alignment:
Q  495 atttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-cta 593  Q
    |||| |||| |||||||||||||||||||||||||||   | || |||||||  |||| |||||||||||||||| || |||||||||| |||||| |||    
T  13583637 attttaaggtaaattagaagtcaattagaggagttgttaatagtctgaggaaccttttctattgtttttattcgagtctttgtaattcagttttatccta 13583538  T
Q  594 aatcat 599  Q
    ||||||    
T  13583537 aatcat 13583532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 592 - 649
Target Start/End: Complemental strand, 16052307 - 16052250
Alignment:
Q  592 taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  16052307 taaatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatctaaatc 16052250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 519 - 606
Target Start/End: Complemental strand, 14977211 - 14977122
Alignment:
Q  519 ttagaggagttgtcgtttgtttgaggaattttttgtattgttttt-attcgaatcattgtaattcacttttat-ctaaatcatgcaactc 606  Q
    ||||||||||||||  | ||||||||||  | ||||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||    
T  14977211 ttagaggagttgtcaatggtttgaggaacatattgtattgtttttcactcgagtcattgtaattcacttttatcctaaatcatgcaactc 14977122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 548 - 648
Target Start/End: Original strand, 28074554 - 28074653
Alignment:
Q  548 tttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaa 646  Q
    ||||||||||||||| ||| || || ||| |||||||||||||| ||||||||||||||| || ||||||| || | |||| ||||||||||||||||||    
T  28074554 tttttgtattgttttcatt-gagtcgttgcaattcacttttatcctaaatcatgcaactccataggtgtttcgagtctttt-tagtgagaaatcatgtaa 28074651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 487 - 606
Target Start/End: Complemental strand, 35135558 - 35135438
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||| ||||||||| |||| | |||||| | | ||||||||||    |||| ||| |  |||||||||||||||| |||| ||||||||||||| ||    
T  35135558 ttctttgtatttgaaggtaaataaaaagtcattcaaaggagttgtcaaaggttttaggtacattttgtattgtttttactcgagtcattgtaattcattt 35135459  T
Q  587 ttat-ctaaatcatgcaactc 606  Q
    |||| ||||||||||||||||    
T  35135458 ttatcctaaatcatgcaactc 35135438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 519 - 649
Target Start/End: Original strand, 16054305 - 16054436
Alignment:
Q  519 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttt 617  Q
    ||||||||||||||  |  ||| |||||  |||||||||||||| | |||| |  |||||||||| ||||||| || |||||  ||||| || | |||||    
T  16054305 ttagaggagttgtcaatgatttaaggaacattttgtattgttttcactcgagttgttgtaattcatttttatcctagatcataaaactccatagatgttt 16054404  T
Q  618 tgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    ||| |||||||||||||| |||||||||||||    
T  16054405 tgattgttttgtagtgaggaatcatgtaaatc 16054436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 551 - 649
Target Start/End: Original strand, 28902132 - 28902231
Alignment:
Q  551 ttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||||| |||||| || ||||||||||||||||| ||| | || |||| || ||  ||||||| | ||||| ||||||||||||||||||||||    
T  28902132 ttgtattgttttcattcgagtcgttgtaattcacttttatcctataccacgcaaatccataagtgtttttagtgtttagtagtgagaaatcatgtaaatc 28902231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 595 - 649
Target Start/End: Original strand, 26882496 - 26882550
Alignment:
Q  595 atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||||| || |||||||||| |||||||||||||| |||||||||||||    
T  26882496 atcatgcaactccataggtgttttgattgttttgtagtgaggaatcatgtaaatc 26882550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 566 - 650
Target Start/End: Complemental strand, 22894587 - 22894502
Alignment:
Q  566 tcgaatcattgtaattcacttttatctaa-atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcg 650  Q
    |||||||||||| |||||||||||||| | ||||| |||||| || ||| |||| | |||| | ||||||||||||||||||||||    
T  22894587 tcgaatcattgtgattcacttttatcttagatcattcaactccataggtatttttagtgttctatagtgagaaatcatgtaaatcg 22894502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 649
Target Start/End: Complemental strand, 29047391 - 29047292
Alignment:
Q  551 ttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||||| | |||| ||| ||||||||| ||||||  |  |||||||||||| ||   |||||||| |||||||||||||| |||||||||||||    
T  29047391 ttgtattgttttcactcgagtcactgtaattcaattttataatggatcatgcaactccatatatgttttgagtgttttgtagtgaggaatcatgtaaatc 29047292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 651
Target Start/End: Complemental strand, 13530242 - 13530077
Alignment:
Q  486 attctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcact 585  Q
    |||||||||| ||||||  |||| ||| |||| ||||||||| ||||| | ||||||||||  |||||||||||||| |||| | || ||| |||||| |    
T  13530242 attctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaacattttgtattgttttcattcaagtctttgaaattcaat 13530143  T
Q  586 tt-tatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 651  Q
    || | ||  ||||||||||||| ||  || |||| ||  |||| || ||| ||||||||||||||||    
T  13530142 ttatttcctaatcatgcaactccatatgtatttt-aagcttttttattgaaaaatcatgtaaatcgg 13530077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 651
Target Start/End: Complemental strand, 13619781 - 13619616
Alignment:
Q  486 attctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcact 585  Q
    |||||||||| ||||||  |||| ||| |||| ||||||||| ||||| | ||||||||||  |||||||||||||| |||| | || ||| |||||| |    
T  13619781 attctttgcaattgaagacaaataagaggtcatttagaggagatgtcgatggtttgaggaacattttgtattgttttcattcaagtctttgaaattcaat 13619682  T
Q  586 tt-tatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 651  Q
    || | ||  ||||||||||||| ||  || |||| ||  |||| || ||| ||||||||||||||||    
T  13619681 ttatttcctaatcatgcaactccatatgtatttt-aagcttttttattgaaaaatcatgtaaatcgg 13619616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 649
Target Start/End: Complemental strand, 6888322 - 6888166
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    |||| ||||||||| |||| | | |||| ||||| ||||||||  | ||| ||| ||  ||||||||| |||| ||| || ||||||||||||| || ||    
T  6888322 tttgtatttgaaggtaaataaaaggtcatttagacgagttgtcaatggttagagaaacattttgtatt-ttttcatttgagtcattgtaattcagttcta 6888224  T
Q  590 tc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    || ||||||||||||||| |  |||||||||| |  ||| |||||||||||||||||||||    
T  6888223 tcctaaatcatgcaactcca--ggtgttttgagtcattt-tagtgagaaatcatgtaaatc 6888166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 538 - 656
Target Start/End: Complemental strand, 5570226 - 5570107
Alignment:
Q  538 tttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgaga 636  Q
    |||||||||  | |||||||||||| | |||| |  ||||||||||||||||| ||| |||||||||||   | |||||||||| |||||| ||||||      
T  5570226 tttgaggaacatattgtattgttttcactcgagttgttgtaattcacttttatcctatatcatgcaacttcgtaggtgttttgagtgttttctagtgatg 5570127  T
Q  637 aatcatgtaaatcggcaaat 656  Q
     || |||||||||| |||||    
T  5570126 cattatgtaaatcgacaaat 5570107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 655
Target Start/End: Complemental strand, 28260320 - 28260257
Alignment:
Q  591 ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    ||||||||||  |||| || |||||||||| | |||| ||||||||||||||||||||| |||||    
T  28260320 ctaaatcatgagactccataggtgttttgagtctttt-tagtgagaaatcatgtaaatcagcaaa 28260257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 487 - 587
Target Start/End: Complemental strand, 41505673 - 41505573
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||  |||| ||| |||| ||||  ||||| |    |||||||||||| ||||||||| |||| |||||| |  |||||||||||||    
T  41505673 ttctttgcatttgaagacaaataagaggtcatttaggagagttataccgtgtttgaggaatattttgtattattttcattcgagttgttgtaattcactt 41505574  T
Q  587 t 587  Q
    |    
T  41505573 t 41505573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 9e-44; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 476 - 649
Target Start/End: Original strand, 19601766 - 19601940
Alignment:
Q  476 ttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcatt 575  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| || |||||||||| ||||| |||| |||| |||| |||  ||    
T  19601766 ttttagtgtaattctttgcatttaaaggcaaattaaaagtcaattagaggagttgtcattggtttgaggaactttttctatttttttcattcaaattgtt 19601865  T
Q  576 gtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    ||||||||||||||| |||||||||||||||| || ||| |||| |  ||||| |||||||||||||||||||||    
T  19601866 gtaattcacttttatcctaaatcatgcaactccataggtatttttagcgttttctagtgagaaatcatgtaaatc 19601940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 440 - 654
Target Start/End: Original strand, 29437401 - 29437617
Alignment:
Q  440 tgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtt 539  Q
    |||||||| |||||||||| |||||||||    || |||||||    ||||||| ||||||||| ||||||||| ||||||||| ||||||||  | |||    
T  29437401 tgatgatataataacatatgatgttttttgggttgtttttagttattttctttgtatttgaaggcaaattagaactcaattagatgagttgtcaatagtt 29437500  T
Q  540 tgaggaattttttg--tattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgaga 636  Q
    ||||||||||||||  | || |||| |||||| |  | |||||||| |||||| |||||||||||||||  || | |||||||| | |||| || |||||    
T  29437501 tgaggaattttttgattttttttttcattcgagtattcgtaattcagttttatcctaaatcatgcaacttcatagctgttttgagtctttt-taatgaga 29437599  T
Q  637 aatcatgtaaatcggcaa 654  Q
    ||||||||||||||||||    
T  29437600 aatcatgtaaatcggcaa 29437617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 487 - 651
Target Start/End: Original strand, 10576432 - 10576596
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    |||||| ||||||||||||||| |||  ||| |||||| |||||||  | |||||| |||  |||||||||||||| |||||| ||||||||||||||||    
T  10576432 ttctttccatttgaaggaaaataagagatcatttagagaagttgtccatggtttgaagaacattttgtattgttttcattcgagtcattgtaattcactt 10576531  T
Q  587 tta-tctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 651  Q
    ||| ||||||| || |||||  || ||||||||| ||  ||| ||||||||||| |||||||||||    
T  10576532 ttattctaaattatacaacttcataggtgttttg-attctttctagtgagaaattatgtaaatcgg 10576596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 487 - 655
Target Start/End: Original strand, 21077212 - 21077380
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||  | ||||||| ||  ||||||||| ||||||||||| || ||||| |||| ||    
T  21077212 ttctttgcatttgaaggcaaattagaagtcatttagaggagttgtcaatggtttgagaaaccttttgtattatttttattcgagtcgttgtagttcaatt 21077311  T
Q  587 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    |||||  |||||||  || || || ||||||||   | |||| |||||| ||||||||||||| ||||||    
T  21077312 ttatcacaaatcatcaaattccataggtgtttttggtctttt-tagtgaaaaatcatgtaaattggcaaa 21077380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 490 - 655
Target Start/End: Original strand, 23353605 - 23353769
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    |||||||||||||  | ||||||||||| |||||| | || ||  | |||| ||||| ||||||||||||||| |||||| || |||||||||| |||||    
T  23353605 tttgcatttgaagtcagattagaagtcatttagagtaattatcaatggtttaaggaactttttgtattgttttcattcgagtcgttgtaattcaatttta 23353704  T
Q  590 tctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    | |||||| ||||  |  ||  ||||||||| | |||| |||||||||||||||||||||||||||    
T  23353705 tataaatcgtgcacattcatgagtgttttgagtctttt-tagtgagaaatcatgtaaatcggcaaa 23353769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 487 - 649
Target Start/End: Complemental strand, 9783119 - 9782956
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    |||||| |||||||||| |||| ||| |  | ||||||||||||||  | ||||||||||  | |||||||||||| | || | ||||||||||||| ||    
T  9783119 ttctttacatttgaaggcaaatgagatgagagttagaggagttgtcaatagtttgaggaacatattgtattgttttcactcaattcattgtaattcagtt 9783020  T
Q  587 tta-tctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    ||| | || |||||||||||| || ||| ||| || |||||||||||||| |||||||||||||    
T  9783019 ttattttagatcatgcaactccataggtttttagagtgttttgtagtgaggaatcatgtaaatc 9782956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 490 - 651
Target Start/End: Original strand, 21167711 - 21167872
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    ||||||||||||||||||| ||| |||| ||||||||||||||  |  ||| |||||  |||||||||||||| |||||| |  |||||||| |||||||    
T  21167711 tttgcatttgaaggaaaataagacgtcatttagaggagttgtccatgttttaaggaacattttgtattgttttcattcgagttgttgtaatttactttta 21167810  T
Q  590 t-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 651  Q
    | |||||  ||| ||||  || ||||||||||   |||| |||||||||||||||||||||||    
T  21167811 tcctaaaatatgtaacttcataggtgttttgagactttt-tagtgagaaatcatgtaaatcgg 21167872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 574 - 657
Target Start/End: Complemental strand, 17026745 - 17026661
Alignment:
Q  574 ttgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatt 657  Q
    |||||||||||||||||| || |||||||||||| || |||||||||| ||||||||||| | ||||||||||||||| ||||||    
T  17026745 ttgtaattcacttttatcctagatcatgcaactccataggtgttttgagtgttttgtagtcataaatcatgtaaatcgacaaatt 17026661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 519 - 656
Target Start/End: Complemental strand, 34864395 - 34864261
Alignment:
Q  519 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttt 617  Q
    ||||||||||||||  | ||||||||||  | |  ||||||||| | |||  ||||||||||||||||||||| ||||| ||| ||||| ||  ||||||    
T  34864395 ttagaggagttgtcaatggtttgaggaacgtatcatattgttttcactcg--tcattgtaattcacttttatcctaaattatgaaactccat--gtgttt 34864300  T
Q  618 tgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    ||| ||||||||||||||||||||||||||||| |||||    
T  34864299 tgagtgttttgtagtgagaaatcatgtaaatcgacaaat 34864261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 574 - 655
Target Start/End: Original strand, 15192269 - 15192351
Alignment:
Q  574 ttgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    |||||||||||||||||| || ||| |||| ||| || |||||||||| ||||||||||||||||||||||||||||| ||||    
T  15192269 ttgtaattcacttttatcctagatcgtgcagctccataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaa 15192351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 440 - 641
Target Start/End: Original strand, 22119578 - 22119779
Alignment:
Q  440 tgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtt 539  Q
    ||||||||||| | ||||| || |||| | ||||| |||||||    ||||||||||||||||| ||||||||||| | ||| ||||||||||  | |||    
T  22119578 tgatgatagaacatcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaattagaagttatttataggagttgtcaatggtt 22119677  T
Q  540 tgaggaattttttgtattgtttttattcgaatcattgtaattcactttta-tctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaa 638  Q
    |||||||    ||||| ||||||  ||||| ||||||||||| |||||||  | |||||||||||||  || ||| |||||| | |||| ||||||||||    
T  22119678 tgaggaacaaattgtaatgttttcgttcgagtcattgtaatttacttttacccaaaatcatgcaactacataggtattttgagtctttt-tagtgagaaa 22119776  T
Q  639 tca 641  Q
    |||    
T  22119777 tca 22119779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 487 - 656
Target Start/End: Original strand, 33519019 - 33519178
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||| |||| ||| || | |||| |||||||||| | ||||||||||| |||||||| ||||| ||||          |||||| ||    
T  33519019 ttctttgcatttgaaggcaaataagaggttatttaggggagttgtcgatagtttgaggaatattttgtatcgttttcattc----------aattcagtt 33519108  T
Q  587 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    ||||| ||||||||||||||   | |||||||||| | |||| |||||||||||||||| |||||||||||    
T  33519109 ttatcttaaatcatgcaacttcgtaggtgttttgagtctttt-tagtgagaaatcatgtgaatcggcaaat 33519178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 520 - 657
Target Start/End: Original strand, 27302790 - 27302927
Alignment:
Q  520 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgtttt 618  Q
    ||||| |||||||  | ||||||||||  |||||||||||||| | |||| ||||||||||||| || ||| ||| |||||||||||  | |||||||||    
T  27302790 tagagaagttgtcaatggtttgaggaacattttgtattgttttcactcgagtcattgtaattcaattatatactagatcatgcaacttca-tggtgtttt 27302888  T
Q  619 gaatgttttgtagtgagaaatcatgtaaatcggcaaatt 657  Q
     | | |||||||||||  |||||||||||||| ||||||    
T  27302889 tagtattttgtagtgatgaatcatgtaaatcgacaaatt 27302927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 487 - 606
Target Start/End: Original strand, 46647175 - 46647295
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||| |||||||||||||| |||    | |||||| |||||||  | |||| | |||| |||||||||||||| |||| | ||  ||||||||||||    
T  46647175 ttctttgtatttgaaggaaaataagagaaaatttagagaagttgtcaatggtttcaagaatattttgtattgttttcattctagtcggtgtaattcactt 46647274  T
Q  587 ttat-ctaaatcatgcaactc 606  Q
    |||| ||||||||||||||||    
T  46647275 ttatcctaaatcatgcaactc 46647295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 551 - 648
Target Start/End: Complemental strand, 10320291 - 10320193
Alignment:
Q  551 ttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaat 648  Q
    ||||||| |||| | |||| || |||||||||||||||||| || | |||||||||| || |||||||| |   |||||||||||||||||| ||||||    
T  10320291 ttgtattcttttcactcgagtcgttgtaattcacttttatcctagaccatgcaactccataggtgttttaagctttttgtagtgagaaatcaggtaaat 10320193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 656
Target Start/End: Complemental strand, 25315334 - 25315197
Alignment:
Q  520 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgtttt 618  Q
    |||||||||||||  |  |||||||||  | |||||||||||| | | || || |||||||| | ||||||| || |||||||||||| ||  | |||||    
T  25315334 tagaggagttgtcaatgctttgaggaacatattgtattgttttcacttgagtcgttgtaattaagttttatcctagatcatgcaactccatatgggtttt 25315235  T
Q  619 gaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    || |  ||||||||||| |||||||||||||| |||||    
T  25315234 gagtaatttgtagtgaggaatcatgtaaatcgacaaat 25315197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 605
Target Start/End: Original strand, 24925787 - 24925903
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    |||| ||||||||  |||| |||||||| ||| | ||||||||  | ||||||| ||  |||||||||||||| ||| || ||  |||||||||||||||    
T  24925787 tttgtatttgaagataaataagaagtcatttaaaagagttgtcaatcgtttgagtaacattttgtattgttttcatttgagtcgctgtaattcactttta 24925886  T
Q  590 tc-taaatcatgcaact 605  Q
    || ||||||||| ||||    
T  24925887 tcataaatcatgtaact 24925903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 655
Target Start/End: Complemental strand, 31859931 - 31859868
Alignment:
Q  591 ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    |||||||||||||||  || |||||||||| | |||| ||||||||||||||||||||| |||||    
T  31859931 ctaaatcatgcaactgcataggtgttttgagtctttt-tagtgagaaatcatgtaaatcagcaaa 31859868  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 622 - 656
Target Start/End: Original strand, 18898097 - 18898131
Alignment:
Q  622 tgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    ||||||||||||||||||||||||||||| |||||    
T  18898097 tgttttgtagtgagaaatcatgtaaatcgacaaat 18898131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 656
Target Start/End: Original strand, 13064466 - 13064574
Alignment:
Q  548 tttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaa 646  Q
    ||||| |||||||||||||| | ||||  ||| ||||||||||  |||||||||||| |  || |||||||||| |  ||| |||| |||||||||||||    
T  13064466 tttttttattgtttttattcaattcataataaatcacttttattataaatcatgcaattttataggtgttttgagtcattt-tagtaagaaatcatgtaa 13064564  T
Q  647 atcggcaaat 656  Q
    || |||||||    
T  13064565 attggcaaat 13064574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 622 - 650
Target Start/End: Complemental strand, 47024765 - 47024737
Alignment:
Q  622 tgttttgtagtgagaaatcatgtaaatcg 650  Q
    |||||||||||||||||||||||||||||    
T  47024765 tgttttgtagtgagaaatcatgtaaatcg 47024737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 9e-41; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 440 - 656
Target Start/End: Complemental strand, 27918165 - 27917949
Alignment:
Q  440 tgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtt 539  Q
    ||||||| ||||||||||| || |||||  ||||| ||||| |||||||||||||||||||||| ||||||||| |||| || |||||||||| || |||    
T  27918165 tgatgatggaataacatatgatatttttagctatg-ttttaatgtaattctttgcatttgaaggcaaattagaattcaactataggagttgtcattggtt 27918067  T
Q  540 tgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaa 638  Q
    |||||||  ||  |||||||||| ||| || || ||||||||||||||||| |||||||||||||||| || |||||||||| | || | |||| |||||    
T  27918066 tgaggaacgttgggtattgttttcatttgagtcgttgtaattcacttttatactaaatcatgcaactccataggtgttttgactattctatagtaagaaa 27917967  T
Q  639 tcatgtaaatcggcaaat 656  Q
    |||||| ||||| |||||    
T  27917966 tcatgtcaatcgacaaat 27917949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 440 - 592
Target Start/End: Complemental strand, 29647728 - 29647576
Alignment:
Q  440 tgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtt 539  Q
    ||||||| ||||||||||| ||||||||  ||||| | ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||  ||    
T  29647728 tgatgatggaataacatatgatgtttttagctatgttgttagtgtaattatttgcatttgaaggcaaattagaagtcaattagagtagttgtcattgatt 29647629  T
Q  540 tgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatct 592  Q
    ||||||| ||||| ||||||||| ||| || || |||||||||||||||||||    
T  29647628 tgaggaactttttatattgttttcatttgagtcgttgtaattcacttttatct 29647576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 487 - 655
Target Start/End: Original strand, 19541016 - 19541184
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||||||||||||| | |  || |||||||||   | |||||||||| ||||||||||  ||| | |||| ||||||||||||| ||    
T  19541016 ttctttgcatttgaaggaaaattagaatttatatataggagttgttaatggtttgaggaactttttgtatttatttcaatcgagtcattgtaattcagtt 19541115  T
Q  587 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    |||| |||||||||||||||| || |||||||||| |  ||| |||||||||||||||||||||||||||    
T  19541116 ttatcctaaatcatgcaactccataggtgttttgagt-ctttctagtgagaaatcatgtaaatcggcaaa 19541184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 519 - 655
Target Start/End: Original strand, 17152164 - 17152301
Alignment:
Q  519 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttt 617  Q
    ||||||||||||||  | ||||||||||| ||||||||| |||| |||||| || |||||||| ||||||||| ||| |||||||||||  |  ||||||    
T  17152164 ttagaggagttgtcaatggtttgaggaatattttgtattattttcattcgagtcgttgtaattaacttttatcgtaattcatgcaactctgtaagtgttt 17152263  T
Q  618 tgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    ||| | |||| |||| ||||||||||||||||||||||    
T  17152264 tgagttttttttagtaagaaatcatgtaaatcggcaaa 17152301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 487 - 606
Target Start/End: Complemental strand, 17415331 - 17415211
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    |||||| | |||||||||||||||||||||| ||||||||||||||  | | |||||||| ||||||||||||||| |||||| | ||||||||| | ||    
T  17415331 ttctttacttttgaaggaaaattagaagtcatttagaggagttgtcaatgggttgaggaaatttttgtattgttttcattcgattgattgtaatttagtt 17415232  T
Q  587 ttatc-taaatcatgcaactc 606  Q
    ||||| ||||| |||||||||    
T  17415231 ttatcgtaaataatgcaactc 17415211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 487 - 655
Target Start/End: Complemental strand, 22388888 - 22388725
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||  |  ||||||||| ||||| ||||||||| ||| || |||||||||| || ||    
T  22388888 ttctttgcatttgaaggcaaattagaagtcaattagaggagttgtcaataatttgaggaacttttt-tattgttttcatttgagtcattgtaatccagtt 22388790  T
Q  587 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    |||| || ||||||||||||  |||    |||||| | ||||  ||||||||||||||||||| ||||||    
T  22388789 ttatcctgaatcatgcaacttcatt----ttttgagtctttt-cagtgagaaatcatgtaaattggcaaa 22388725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 476 - 650
Target Start/End: Original strand, 22510915 - 22511088
Alignment:
Q  476 ttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcatt 575  Q
    ||||||||||||| |||||||||||||| |||||| |||| ||||||||||| |  | || |||| |||||  ||||||||| |||| |||||| ||  |    
T  22510915 ttttagtgtaattttttgcatttgaaggcaaattataagtaaattagaggagcttccattggttttaggaa-cttttgtatttttttcattcgagtcgct 22511013  T
Q  576 gtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcg 650  Q
    |||||| || ||||| ||||||  ||||||| |  | ||||||||| |||||||||||||||||||||||||||||    
T  22511014 gtaatttacgtttatcctaaattgtgcaact-atatagtgttttgattgttttgtagtgagaaatcatgtaaatcg 22511088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 487 - 620
Target Start/End: Complemental strand, 32276649 - 32276515
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    |||||||||||||||||||||| ||| |||| ||| ||||| ||||  | |||||| |||  ||||| ||||||||||||||| ||||||||||| |  |    
T  32276649 ttctttgcatttgaaggaaaataagaggtcatttaaaggagatgtcaatggtttgaagaacattttgcattgtttttattcgagtcattgtaattgaagt 32276550  T
Q  587 tta-tctaaatcatgcaactcaattggtgttttga 620  Q
    ||| |||||||||| |||||| || ||||||||||    
T  32276549 ttattctaaatcattcaactccatgggtgttttga 32276515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 490 - 606
Target Start/End: Original strand, 24047364 - 24047481
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    ||||||||||||||||||| ||| || | |||||| | |||||  | |||| |||||  |||||||||||||| |||||| |||||||||||||||||||    
T  24047364 tttgcatttgaaggaaaataagaggttatttagagaaattgtcaatggtttaaggaacattttgtattgttttcattcgagtcattgtaattcactttta 24047463  T
Q  590 t-ctaaatcatgcaactc 606  Q
    | |||||| |||||||||    
T  24047464 tcctaaattatgcaactc 24047481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 581 - 656
Target Start/End: Complemental strand, 27417305 - 27417229
Alignment:
Q  581 tcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    ||||||||||| ||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||| |||||    
T  27417305 tcacttttatcctaaatcatgcaactccataggtgttttaagtgttttgtagtgagaaatcatgtaaatcgacaaat 27417229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 470 - 650
Target Start/End: Complemental strand, 21505292 - 21505111
Alignment:
Q  470 ctatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcga 569  Q
    ||||| ||||||| |  ||||||||||||||||  |||| ||| |  | |||||| |||||||  | |||||||||   | |||||||||||| | ||||    
T  21505292 ctatgtttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtttgaggagcatattgtattgttttcactcga 21505193  T
Q  570 atcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcg 650  Q
     || || ||||| ||||||||| ||||||||||||||   | | |||||||| |||||||||||||| ||||||||||||||    
T  21505192 gtctttataatttacttttatcctaaatcatgcaacttcttagatgttttgagtgttttgtagtgaggaatcatgtaaatcg 21505111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 487 - 618
Target Start/End: Complemental strand, 21843138 - 21843006
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||  |||| ||  || | |||||||||||| |  | |||| |||||  | |||||||||||| |||||| ||||||||||| ||||    
T  21843138 ttctttgcatttgaagacaaataagttgtaatttagaggagttgccaatggttttaggaacatgttgtattgttttcattcgagtcattgtaatttactt 21843039  T
Q  587 ttat-ctaaatcatgcaactcaattggtgtttt 618  Q
    |||| |||||||||||||||| || ||||||||    
T  21843038 ttatcctaaatcatgcaactctataggtgtttt 21843006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 537 - 650
Target Start/End: Original strand, 24187995 - 24188112
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaa---tcatgcaactcaattggtgttttgaatgttttgtagt 632  Q
    |||| ||||| |||||||||||| || |||||| ||||||| |||||||||||| |||||   |||| |||||| |   ||||||||| | |||||||||    
T  24187995 gtttaaggaactttttgtattgtattcattcgagtcattgtgattcacttttatcctaaatattcattcaactccaaatgtgttttgagtattttgtagt 24188094  T
Q  633 gagaaatcatgtaaatcg 650  Q
    ||||||||||||||||||    
T  24188095 gagaaatcatgtaaatcg 24188112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 549 - 655
Target Start/End: Original strand, 18117024 - 18117129
Alignment:
Q  549 ttttgtattgtttttattcgaatcattgtaattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaat 648  Q
    |||||||||||||| ||| || ||||||||||||||||| ||| |||| ||||||||   |||||||||||||| |||| ||   | |||||||||||||    
T  18117024 ttttgtattgttttcatttgagtcattgtaattcactttaatccaaataatgcaactaggttggtgttttgaatctttt-taacaaaaaatcatgtaaat 18117122  T
Q  649 cggcaaa 655  Q
    |||||||    
T  18117123 cggcaaa 18117129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 487 - 655
Target Start/End: Complemental strand, 34063975 - 34063808
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    |||||||||||| |||| |||||| |||||||||||||      ||  | ||||| |||| ||||||||||||||| |||||| |  ||||||||||||     
T  34063975 ttctttgcatttcaaggcaaattaaaagtcaattagag------tcaatggtttgtggaactttttgtattgttttcattcgagttgttgtaattcacta 34063882  T
Q  587 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgt----agtgagaaatcatgtaaatcggcaaa 655  Q
    |||| |||||||||||||||| |   ||||||||| | |||| |    |||||||| |||||||||||||||||    
T  34063881 ttatcctaaatcatgcaactccacaagtgttttgagtttttttttttgagtgagaattcatgtaaatcggcaaa 34063808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 537 - 651
Target Start/End: Complemental strand, 21849158 - 21849045
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 635  Q
    ||||||||||  ||||||||||||||  || || ||||||||||||| ||||||| ||||||||||||||| || ||  |||||| | |||| |||||||    
T  21849158 gtttgaggaacattttgtattgttttcttt-gagtcattgtaattcagttttatcataaatcatgcaactccataggatttttgagtctttt-tagtgag 21849061  T
Q  636 aaatcatgtaaatcgg 651  Q
    |||| |||||||||||    
T  21849060 aaataatgtaaatcgg 21849045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 549 - 655
Target Start/End: Original strand, 39730488 - 39730594
Alignment:
Q  549 ttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 647  Q
    |||| ||| |||||||||| | || ||||||||||||||||| ||||||||||||||||    |||||||||| | |||| |||||||||||||| ||||    
T  39730488 ttttctatagtttttattcaagtcgttgtaattcacttttatcctaaatcatgcaactctgcaggtgttttgagtatttt-tagtgagaaatcatataaa 39730586  T
Q  648 tcggcaaa 655  Q
    || |||||    
T  39730587 tcagcaaa 39730594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 554 - 655
Target Start/End: Complemental strand, 18236371 - 18236270
Alignment:
Q  554 tattgtttttattcgaatcattgtaattcacttttatct-aaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggc 652  Q
    ||||||||| |||||| |  || |||||||||||||||| |||||||||||||| ||  || |||||| | |||| |||||||||||||||||| |||||    
T  18236371 tattgttttcattcgagttgttataattcacttttatcttaaatcatgcaactccataagtattttgagtctttt-tagtgagaaatcatgtaactcggc 18236273  T
Q  653 aaa 655  Q
    |||    
T  18236272 aaa 18236270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 440 - 532
Target Start/End: Complemental strand, 22525836 - 22525743
Alignment:
Q  440 tgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgca-tttgaaggaaaattagaagtcaattagaggagttgtc 532  Q
    ||||||||||||||||||| |||| |||   |||| |||||||    ||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  22525836 tgatgatagaataacatatgatgtgtttatatatgtttttagttattttctttgcaatttgaaggcaaattagaagtcatttagaggagttgtc 22525743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 520 - 648
Target Start/End: Original strand, 35031714 - 35031843
Alignment:
Q  520 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgtttt 618  Q
    ||||||||||||   | ||||||||||  | |||||||||||| | |||| || |||||| | ||||||||| || ||||||||| || || ||||||||    
T  35031714 tagaggagttgttaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaacttacttttatcctagatcatgcaattccataggtgtttt 35031813  T
Q  619 gaatgttttgtagtgagaaatcatgtaaat 648  Q
    || ||||||||||| || |||||| |||||    
T  35031814 gagtgttttgtagtcaggaatcatataaat 35031843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 487 - 605
Target Start/End: Complemental strand, 21844765 - 21844646
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||  |||| ||  || | ||||||||||||||  | |||| |||||  | || ||||||||| |||||| ||||||||||| |||     
T  21844765 ttctttgcatttgaagacaaataagttgtaatttagaggagttgtcaatggttttaggaacatgttatattgttttcattcgagtcattgtaatttactc 21844666  T
Q  587 ttat-ctaaatcatgcaact 605  Q
    |||| |||||||||||||||    
T  21844665 ttatcctaaatcatgcaact 21844646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 575 - 649
Target Start/End: Original strand, 25474104 - 25474179
Alignment:
Q  575 tgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    ||||||||| | ||||| || |||||||||||| |  |||||||||| |||||||||||||| |||||||||||||    
T  25474104 tgtaattcagtattatcctagatcatgcaactccaaaggtgttttgactgttttgtagtgaggaatcatgtaaatc 25474179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 519 - 656
Target Start/End: Original strand, 30998782 - 30998920
Alignment:
Q  519 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttt 617  Q
    ||||| ||||||||  | ||||||||||  | |||||||||||| | | || || ||||| |||| ||||||| || ||||| |||||| || |||||||    
T  30998782 ttagatgagttgtcaatggtttgaggaacatattgtattgttttcacttgagtcgttgtacttcagttttatcctagatcatacaactccataggtgttt 30998881  T
Q  618 tgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    ||| |||||||||||||  | | |||||||||| |||||    
T  30998882 tgagtgttttgtagtgaagagtgatgtaaatcgacaaat 30998920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 649
Target Start/End: Complemental strand, 16593796 - 16593723
Alignment:
Q  577 taattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    ||||||| ||||||| || |||||||||||| || |||||| ||| |||||||||||||  |||||||||||||    
T  16593796 taattcagttttatcctagatcatgcaactccataggtgttctgagtgttttgtagtgaagaatcatgtaaatc 16593723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 649
Target Start/End: Complemental strand, 28278559 - 28278396
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||| |||| |||||  | |||||||| || ||  | |||||| |||  |  |||||| |||| | | || || |||||||||||||    
T  28278559 ttctttgcatttgaaggcaaataagaagagagttagaggatttctcaatggtttgaagaacatagtgtattattttcacttgagtcgttgtaattcactt 28278460  T
Q  587 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    ||||| || |||||||||||| || | | |||| | |||||||| || ||||| ||||||||||    
T  28278459 ttatcctagatcatgcaactccatagatattttaagtgttttgtggtaagaaagcatgtaaatc 28278396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 490 - 655
Target Start/End: Original strand, 31449939 - 31450104
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttt-t 588  Q
    |||||||||||||  || ||| |||||| ||||||||||||| | | |||| |||||| ||||||||| |||| ||| || ||||| ||| ||| ||| |    
T  31449939 tttgcatttgaagacaatttataagtcatttagaggagttgtagatggttttaggaatattttgtatttttttcattagagtcattataaatcagtttat 31450038  T
Q  589 atctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
      || ||| ||||||||  || |||||||||| | |||| || ||| ||||||||| | ||||||||    
T  31450039 tccttaattatgcaactttataggtgttttgagtatttt-tattgataaatcatgtgattcggcaaa 31450104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 649
Target Start/End: Original strand, 35707907 - 35707945
Alignment:
Q  611 ggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  35707907 ggtgttttgagtgttttgtagtgaggaatcatgtaaatc 35707945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 438 - 603
Target Start/End: Complemental strand, 23157976 - 23157807
Alignment:
Q  438 attgatgatagaataacatattatgttttttactatgctttt---agtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgt 534  Q
    ||||||||| ||||||||||| ||||||||| ||||| ||||   |||    ||||||||||||||||||||||||||||||||||||||||||||||      
T  23157976 attgatgatggaataacatatgatgttttttgctatgttttttttagttattttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcaa 23157877  T
Q  535 ttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaa 603  Q
    | |||||||||| |||| |||||||||| ||| || || |||||||||||||||||| ||||||||||||    
T  23157876 tggtttgaggaacttttggtattgttttcatttgagtcgttgtaattcacttttatcataaatcatgcaa 23157807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 494 - 650
Target Start/End: Original strand, 19331497 - 19331651
Alignment:
Q  494 catttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ct 592  Q
    |||||||||||||||||||| ||||||||||||||||||  ||||||||| || |||||||||||| || |||||| || |||||||| | |||||| ||    
T  19331497 catttgaaggaaaattagaattcaattagaggagttgtcaattgtttgagaaactttttgtattgtgttcattcgagtcgttgtaatttagttttatcct 19331596  T
Q  593 aaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcg 650  Q
    ||||||||||| || ||  ||||||||| | |||| | ||||||||||||||||||||    
T  19331597 aaatcatgcaattccat--gtgttttgagtctttt-ttgtgagaaatcatgtaaatcg 19331651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 551 - 656
Target Start/End: Original strand, 16634089 - 16634195
Alignment:
Q  551 ttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||||| | |||| || ||||||||||||||||| |||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||||    
T  16634089 ttgtattgttttcactcgagtcgttgtaattcacttttattctaaatcatgcaactctataggtgttttgaatgttttgcagtgagaaatcatataaatc 16634188  T
Q  650 ggcaaat 656  Q
    | |||||    
T  16634189 gacaaat 16634195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 448 - 645
Target Start/End: Complemental strand, 16603785 - 16603590
Alignment:
Q  448 gaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaat 547  Q
    ||||||||||| |||||||| ||| || |||||||||| ||| ||| ||||||||| ||||||||||| ||||||||   |||||| |  |||||||||     
T  16603785 gaataacatatgatgtttttaact-tgtttttagtgtatttccttgtatttgaaggtaaattagaagtgaattagag---ttgtcgatgatttgaggaac 16603690  T
Q  548 t-ttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgta 645  Q
    | |||| ||||||||| |||||| || |||||||| | ||||| | |||||||||||| |  || |||||||||| |||||| |||||||||||||||||    
T  16603689 tcttttttattgttttgattcgagtcgttgtaattaaattttagcctaaatcatgcaatttcataggtgttttgagtgttttctagtgagaaatcatgta 16603590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 487 - 655
Target Start/End: Original strand, 26070453 - 26070621
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    |||||||||||| |||| |||| ||| |||| ||||||||||||||  |  |||||||||  ||| |||||||||| |||||| | | ||||||||| ||    
T  26070453 ttctttgcattttaaggcaaataagaggtcatttagaggagttgtcaatcatttgaggaaaatttagtattgttttcattcgagttaatgtaattcagtt 26070552  T
Q  587 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    ||||| ||||||||||||||| ||  ||||||||| | |||| |||||||||||||||||||| ||||||    
T  26070553 ttatcataaatcatgcaactccataagtgttttgagtctttt-tagtgagaaatcatgtaaattggcaaa 26070621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 490 - 655
Target Start/End: Original strand, 20694622 - 20694787
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    ||||||||| ||||||||||| |||  | |||||||| |||||  | |||||||||| ||||||||||||||| |||||| ||||||||||||| |||||    
T  20694622 tttgcatttaaaggaaaattaaaagatatttagaggatttgtcaatggtttgaggaactttttgtattgttttcattcgagtcattgtaattcagtttta 20694721  T
Q  590 t-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    | | |||| || |||||  ||  ||||||||| | |||| |||| ||||||||||||||||||||||    
T  20694722 tcccaaattattcaactgcatatgtgttttgagtctttt-tagtaagaaatcatgtaaatcggcaaa 20694787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 487 - 655
Target Start/End: Original strand, 20083445 - 20083614
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||| |||||| || | | ||||||||||||||  | ||||||||||  |||| |||||||||||||||| |  |||||||||| ||    
T  20083445 ttctttgcatttgaaggcaaattaaaaatta-ttagaggagttgtcaatagtttgaggaacattttttattgtttttattcgagtatttgtaattcagtt 20083543  T
Q  587 ttat-ctaaatcatgcaactcaattggtgttttgaat-gttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
     ||| ||||||||||||| || || |||||||||| |  |||| |||||| |||| |||||||||||||||    
T  20083544 ctatcctaaatcatgcaattccataggtgttttgagtctttttttagtgaaaaattatgtaaatcggcaaa 20083614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 443 - 524
Target Start/End: Original strand, 25367555 - 25367636
Alignment:
Q  443 tgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagag 524  Q
    |||| ||||||||||| | |||||| |||||| ||||||| || ||||||||||||||||||||||||||||||||||||||    
T  25367555 tgatggaataacatatgacgtttttaactatgtttttagtatatttctttgcatttgaaggaaaattagaagtcaattagag 25367636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 520 - 648
Target Start/End: Original strand, 24841765 - 24841894
Alignment:
Q  520 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgtttt 618  Q
    |||||||||| ||  | ||||||||||  | |||||||||||| | |||| || |||||| ||||||||||| || |||||| ||||| || ||||||||    
T  24841765 tagaggagttttcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaagtcacttttatcctagatcatggaactccataggtgtttt 24841864  T
Q  619 gaatgttttgtagtgagaaatcatgtaaat 648  Q
     | |||||||||||||||||||||||||||    
T  24841865 tagtgttttgtagtgagaaatcatgtaaat 24841894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 551 - 649
Target Start/End: Original strand, 18222536 - 18222635
Alignment:
Q  551 ttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||||| | |||| |||||||||||||||||||| ||||||||||||| || || |||||||||| |||||| |||| || ||| |||||||||    
T  18222536 ttgtattgttttaactcgagtcattgtaattcacttttatcctaaatcatgcaaatccataggtgttttgagtgttttatagtaagtaattatgtaaatc 18222635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 549 - 653
Target Start/End: Complemental strand, 11997968 - 11997863
Alignment:
Q  549 ttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 647  Q
    |||||||||||||||||||   |||||| ||||  ||||||| |||||||||||||||  || |||||||||| | |||| |||||||||| ||||||||    
T  11997968 ttttgtattgtttttattcaggtcattgcaatttccttttatactaaatcatgcaacttcataggtgttttgagttttttttagtgagaaaacatgtaaa 11997869  T
Q  648 tcggca 653  Q
    ||||||    
T  11997868 tcggca 11997863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 490 - 656
Target Start/End: Complemental strand, 17382168 - 17382010
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    |||||||||||||  |||| ||| |  | ||||||||||||||  | ||||||||||  | |||||||||||| | || |||| ||||| ||||||||||    
T  17382168 tttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtattgttttcactcaaatcgttgtatttcactttta 17382069  T
Q  590 t-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    | |||||||||||||||         || ||| ||||||||||||||||||||||||||||| |||||    
T  17382068 tcctaaatcatgcaact---------ttatgagtgttttgtagtgagaaatcatgtaaatcgtcaaat 17382010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 537 - 650
Target Start/End: Original strand, 17027556 - 17027670
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 635  Q
    ||||||||||  | ||| |||||||| | | || || |||||||||||||||||| ||||||| ||||||| || |||||||||| |||||||   ||||    
T  17027556 gtttgaggaacatattgaattgttttcacttgagtcgttgtaattcacttttatcctaaatcacgcaactccataggtgttttgactgttttgccatgag 17027655  T
Q  636 aaatcatgtaaatcg 650  Q
    |||||||||||||||    
T  17027656 aaatcatgtaaatcg 17027670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 477 - 527
Target Start/End: Complemental strand, 18873168 - 18873118
Alignment:
Q  477 tttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggag 527  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  18873168 tttagtataattctttgcatttgaaggaaaattagaagtcaattggaggag 18873118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 591 - 656
Target Start/End: Complemental strand, 11274361 - 11274296
Alignment:
Q  591 ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    |||||||||||||||| || |||||||||| ||||||||||| |||||||||||| |||| |||||    
T  11274361 ctaaatcatgcaactccataggtgttttgagtgttttgtagtaagaaatcatgtatatcgacaaat 11274296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 537 - 655
Target Start/End: Complemental strand, 19763976 - 19763860
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 635  Q
    ||||| |||| ||||||||||||||| ||| ||  || |||| |||| ||||||| ||||||||||||||  ||  ||||||||| | |||| |||||||    
T  19763976 gtttgtggaactttttgtattgttttcatttgaggcaatgtagttcagttttatcctaaatcatgcaacttcat--gtgttttgagtctttt-tagtgag 19763880  T
Q  636 aaatcatgtaaatcggcaaa 655  Q
    ||||||||||||||||||||    
T  19763879 aaatcatgtaaatcggcaaa 19763860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 649
Target Start/End: Complemental strand, 7742997 - 7742843
Alignment:
Q  495 atttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-cta 593  Q
    ||||||||| | || |||||||| ||||| ||||||||  | |||||| |||  ||||||||||||||  ||||| || ||||||||||||||||| |||    
T  7742997 atttgaaggcagataagaagtcatttagacgagttgtcaatggtttgaagaacattttgtattgttttcgttcgagtctttgtaattcacttttatccta 7742898  T
Q  594 aatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    ||||||| ||    ||  ||||||||| | |||| || ||||||||||||||||||    
T  7742897 aatcatgtaaaatcatatgtgttttgagt-ttttttaatgagaaatcatgtaaatc 7742843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 523 - 649
Target Start/End: Original strand, 15205658 - 15205785
Alignment:
Q  523 aggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaa 621  Q
    ||||||||||  | ||||||||||  | |||||||||||| | |||| || |||||||||| |||| | ||| ||||||||| || || ||||||||||     
T  15205658 aggagttgtcagtggtttgaggaacatattgtattgttttcactcgagtcgttgtaattcagttttctcctagatcatgcaattccataggtgttttgag 15205757  T
Q  622 tgttttgtagtgagaaatcatgtaaatc 649  Q
    ||||||| |||||| ||| |||||||||    
T  15205758 tgttttgcagtgaggaataatgtaaatc 15205785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 521 - 655
Target Start/End: Complemental strand, 24411031 - 24410897
Alignment:
Q  521 agaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttg 619  Q
    ||||||||||||  | ||||||||||  |||||||||||||| ||| || || |||||||||| |||||| ||||||| |||||||     |||||||||    
T  24411031 agaggagttgtcaatggtttgaggaaaattttgtattgttttcatttgagtcgttgtaattcagttttatcctaaatcgtgcaacttgcgaggtgttttg 24410932  T
Q  620 aatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    | | |||| |||||||||||||||| ||| ||||||    
T  24410931 agtatttt-tagtgagaaatcatgtcaattggcaaa 24410897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 487 - 532
Target Start/End: Complemental strand, 22644000 - 22643955
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtc 532  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||    
T  22644000 ttctttgtatttgaaggaaaattagaagtcatttagaggagttgtc 22643955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 489 - 619
Target Start/End: Original strand, 24517335 - 24517466
Alignment:
Q  489 ctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttt 588  Q
    ||||||||||||||  |||| ||| |  ||||||||||||||||  | ||||||||||  | |||||||||||| |  ||| || ||||||||||| |||    
T  24517335 ctttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtattgttttcacccgagtcgttgtaattcacattt 24517434  T
Q  589 at-ctaaatcatgcaactcaattggtgttttg 619  Q
    || || ||||||| ||||| || |||||||||    
T  24517435 atccttaatcatgtaactccataggtgttttg 24517466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 578 - 651
Target Start/End: Original strand, 25367664 - 25367737
Alignment:
Q  578 aattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 651  Q
    |||||| ||||||| ||||||||||||||  || |||||||||| | |||| |||||||||||||||||||||||    
T  25367664 aattcagttttatcataaatcatgcaacttcataggtgttttgagtctttt-tagtgagaaatcatgtaaatcgg 25367737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 537 - 650
Target Start/End: Complemental strand, 25594778 - 25594664
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 635  Q
    ||||||||||  | |||||||||||| | | || |  ||||| |||| ||||||| ||||| ||||||||  ||  ||||||||| |||||| |||||||    
T  25594778 gtttgaggaacatattgtattgttttcactggagttgttgtatttcatttttatcctaaatgatgcaacttcatatgtgttttgagtgttttatagtgag 25594679  T
Q  636 aaatcatgtaaatcg 650  Q
    |||||||||||||||    
T  25594678 aaatcatgtaaatcg 25594664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 654
Target Start/End: Original strand, 30790726 - 30790922
Alignment:
Q  453 acatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaatttttt 552  Q
    |||||| || |||||| ||||| |||||||    || |||||||||||| | |||| |||||||||||||||||| ||||  | |||| || ||  ||||    
T  30790726 acatataatattttttgctatgtttttagttattttatttgcatttgaaagcaaataagaagtcaattagaggagatgtcaatggttttagtaacatttt 30790825  T
Q  553 gtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 651  Q
    ||     ||||||| || || || ||||||| ||||||| ||||| || |||||  ||||||||||||| | |||| |||||| |||| |||||||||||    
T  30790826 gt-----ttttatttgagtcgttataattcagttttatcctaaattatccaacttcattggtgttttgagtctttt-tagtgaaaaattatgtaaatcgg 30790919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 649
Target Start/End: Original strand, 22754963 - 22755036
Alignment:
Q  577 taattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    ||||||| ||||||| || || ||||||||  || |||||||||| ||||||| ||||||||||||||||||||    
T  22754963 taattcagttttatcctagattatgcaacttcataggtgttttgagtgttttgaagtgagaaatcatgtaaatc 22755036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 581
Target Start/End: Complemental strand, 4325431 - 4325399
Alignment:
Q  549 ttttgtattgtttttattcgaatcattgtaatt 581  Q
    |||||||||||||||||||||||||||||||||    
T  4325431 ttttgtattgtttttattcgaatcattgtaatt 4325399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 606
Target Start/End: Original strand, 24268574 - 24268654
Alignment:
Q  527 gttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactc 606  Q
    ||||||| | ||||||||||  | |||||||||||| | |||| ||||| |||||||||||||| ||| ||||||||||||    
T  24268574 gttgtcgatggtttgaggaacatcttgtattgttttcactcgagtcattataattcacttttatcctagatcatgcaactc 24268654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 606
Target Start/End: Original strand, 24345203 - 24345283
Alignment:
Q  527 gttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactc 606  Q
    ||||||| | ||||||||||  | |||||||||||| | |||| ||||| |||||||||||||| ||| ||||||||||||    
T  24345203 gttgtcgatggtttgaggaacatcttgtattgttttcactcgagtcattataattcacttttatcctagatcatgcaactc 24345283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 648
Target Start/End: Complemental strand, 26330116 - 26330043
Alignment:
Q  574 ttgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaat 648  Q
    ||||||||| |||||||| || |||||||||||  || |||||||||| |||||||||||  ||||||||||||||    
T  26330116 ttgtaattcccttttatcctagatcatgcaacttcataggtgttttgagtgttttgtagt--gaaatcatgtaaat 26330043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 619
Target Start/End: Original strand, 25680625 - 25680708
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta-tctaaatcatgcaactcaattggtgttttg 619  Q
    ||||||||||  | |||||||||||| | |||| || |||||||||| ||||| ||||||||||||||||  || |||||||||    
T  25680625 gtttgaggaacatattgtattgttttcactcgagtcgttgtaattcaattttattctaaatcatgcaacttcataggtgttttg 25680708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 649
Target Start/End: Complemental strand, 25075323 - 25075285
Alignment:
Q  611 ggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  25075323 ggtgttttgagtgttttgtagtaagaaatcatgtaaatc 25075285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 611 - 649
Target Start/End: Complemental strand, 25133292 - 25133254
Alignment:
Q  611 ggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  25133292 ggtgttttgagtgttttgtagtaagaaatcatgtaaatc 25133254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 647
Target Start/End: Complemental strand, 29150977 - 29150882
Alignment:
Q  551 ttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 647  Q
    ||||||| |||| | | |||||||||||||||| ||||||| |||||||||||| |  ||  |||||||||  ||||| |||||||||||| ||||||    
T  29150977 ttgtattattttcacttgaatcattgtaattcatttttatcttaaatcatgcaatttcataagtgttttga--gttttttagtgagaaatcttgtaaa 29150882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 649
Target Start/End: Original strand, 22229833 - 22229946
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 635  Q
    |||| |||||| | |||||||||||| | | || || |||||||||| ||||||| || | |||||||||| |   ||||||||  | ||||||||||||    
T  22229833 gtttaaggaatgtattgtattgttttcacttgagtcgttgtaattcagttttatcctagaccatgcaactccacaagtgttttgggtattttgtagtgag 22229932  T
Q  636 aaatcatgtaaatc 649  Q
     |||||||||||||    
T  22229933 gaatcatgtaaatc 22229946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 537 - 656
Target Start/End: Complemental strand, 25727995 - 25727875
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 635  Q
    |||| |||||| | |||||||||||| | || |||| |||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||    
T  25727995 gtttaaggaatgtattgtattgttttcactctaatcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgag 25727896  T
Q  636 aaatcatgtaaatcggcaaat 656  Q
    ||||||||||||||| |||||    
T  25727895 aaatcatgtaaatcgacaaat 25727875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 537 - 656
Target Start/End: Complemental strand, 25736403 - 25736283
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgag 635  Q
    |||| |||||| | |||||||||||| | || |||| |||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||    
T  25736403 gtttaaggaatgtattgtattgttttcactctaatcgttgtaattcacttttatcctaaatcatgcaactcaataggtgttttgagtgttttgtagtgag 25736304  T
Q  636 aaatcatgtaaatcggcaaat 656  Q
    ||||||||||||||| |||||    
T  25736303 aaatcatgtaaatcgacaaat 25736283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 440 - 655
Target Start/End: Complemental strand, 52271426 - 52271212
Alignment:
Q  440 tgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtt 539  Q
    ||||||| ||||||||||| |||||||| |||||| ||||||||||||||||||||||| |||| ||| ||| | |||| ||||||||||||| || |||    
T  52271426 tgatgatggaataacatatgatgtttttaactatgtttttagtgtaattctttgcatttaaaggcaaaataggattcaa-tagaggagttgtcattggtt 52271328  T
Q  540 tgaggaattttttgtattgtttttattcgaatcattgtaattcacttt-tatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaa 638  Q
    ||||||| ||| |||| | |||| |||  | || |||| ||||||||| |  |||||| ||||||||| || | |||||||| | |||| ||||||||||    
T  52271327 tgaggaaatttgtgtacttttttcatttaagtcgttgtcattcactttattcctaaattatgcaactccatagatgttttgagtctttt-tagtgagaaa 52271229  T
Q  639 tcatgtaaatcggcaaa 655  Q
    | |||||||||||||||    
T  52271228 ttatgtaaatcggcaaa 52271212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 517 - 654
Target Start/End: Original strand, 30675493 - 30675631
Alignment:
Q  517 aattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgt 615  Q
    ||||||||||||||||  | ||||||||||  | |||||||||||| | |||| || ||||||| ||||||| || || |||||||||||| || |||||    
T  30675493 aattagaggagttgtcaatggtttgaggaacatattgtattgttttcactcgagtcgttgtaatacacttttgtcctatatcatgcaactccataggtgt 30675592  T
Q  616 tttgaatgttttgtagtgagaaatcatgtaaatcggcaa 654  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  30675593 tttgagtgttttatagtgagaaatcatgtaaatcggcaa 30675631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 487 - 655
Target Start/End: Complemental strand, 15299005 - 15298837
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||| ||| ||||||||||||| ||| | ||||||||  | |||||||||| |||||||||||| || ||| |||||||||||||| | ||    
T  15299005 ttctttgcatttgcaggcaaattagaagtcatttacaagagttgtcaatggtttgaggaagtttttgtattgtattcatttgaatcattgtaattaagtt 15298906  T
Q  587 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    |||| | |||||||||||||  || |||||||||  | | || |||||| ||||||||||||||||||||    
T  15298905 ttatccaaaatcatgcaacttcataggtgttttgtgtctatt-tagtgataaatcatgtaaatcggcaaa 15298837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 520 - 656
Target Start/End: Original strand, 26657488 - 26657625
Alignment:
Q  520 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgtttt 618  Q
    |||||||||||||  | ||||||||||| |  ||||||||||| | |||| || |||||||||||||||||| || |||| ||||||| || ||||||||    
T  26657488 tagaggagttgtcaatggtttgaggaatataatgtattgttttcactcgattcgttgtaattcacttttatcctagatcacgcaactccataggtgtttt 26657587  T
Q  619 gaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    || ||||||||||||| ||||||||||||||| |||||    
T  26657588 gagtgttttgtagtgaaaaatcatgtaaatcgacaaat 26657625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 551 - 656
Target Start/End: Complemental strand, 25730643 - 25730537
Alignment:
Q  551 ttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||||| |||| |||||||| |||||| ||||||| ||||||||||||||  |  |||||||||| |||||||||| |||||||||||||||||    
T  25730643 ttgtattgttttcattcaaatcattgaaattcaattttatcctaaatcatgcaacttcacaggtgttttgagtgttttgtagcgagaaatcatgtaaatc 25730544  T
Q  650 ggcaaat 656  Q
    | |||||    
T  25730543 gacaaat 25730537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 519 - 649
Target Start/End: Original strand, 23223422 - 23223554
Alignment:
Q  519 ttagaggagttgtcgtttgtttgaggaattttttgtattgttttt-attcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgtt 616  Q
    ||||||||||||||  | ||||||||||    ||||||| ||||| | |||| || |||||||| ||||||||| ||||||||||||||| |  ||||||    
T  23223422 ttagaggagttgtcaatggtttgaggaacacattgtattttttttcactcgattcgttgtaatttacttttatcctaaatcatgcaactccaaaggtgtt 23223521  T
Q  617 ttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    || ||||||||||||||||||||||||||||||    
T  23223522 tttaatgttttgtagtgagaaatcatgtaaatc 23223554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 490 - 600
Target Start/End: Original strand, 25126462 - 25126573
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    |||||||||||||| ||| ||||||||| || |||||||||||  | ||||||| |||||||||||||||||||||| || || | |||||||| |||||    
T  25126462 tttgcatttgaaggcaaaatagaagtcatttggaggagttgtcaatggtttgagaaattttttgtattgtttttatttgagtcgtggtaattcagtttta 25126561  T
Q  590 t-ctaaatcatg 600  Q
    | ||||||||||    
T  25126562 tcctaaatcatg 25126573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 487 - 649
Target Start/End: Original strand, 30781739 - 30781902
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||  |||| ||| |  | ||||||||||||| | |  ||| || ||| | |||||||||||| | ||||  |||||||||||| ||    
T  30781739 ttctttgcatttgaagacaaataagatgagagttagaggagttgttgataattttagaaatatattgtattgttttcaatcgagacattgtaattcagtt 30781838  T
Q  587 ttatctaa-atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    ||||| || ||||| |||||| || |||||||||| |||||||||||||| |||||||||||||    
T  30781839 ttatccaagatcatacaactccataggtgttttgagtgttttgtagtgaggaatcatgtaaatc 30781902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 487 - 655
Target Start/End: Original strand, 26102036 - 26102204
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||| | |||| ||| |||| |||||| | || ||  | |||||||||   |||||||||||||| |||||| |  |||||||||||||    
T  26102036 ttctttgcatttgaacgcaaataagaggtcatttagagaatttatcaatggtttgaggaccattttgtattgttttcattcgagttgttgtaattcactt 26102135  T
Q  587 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    |||| |||||||||||||||| || |||||||||| | |||| |||||||| ||| || |||||| ||||    
T  26102136 ttatcctaaatcatgcaactccatgggtgttttgagtctttt-tagtgagatatcgtgcaaatcgacaaa 26102204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 487 - 647
Target Start/End: Original strand, 50047160 - 50047321
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||  |||| ||| |  || |||||||||||||  |  |||||| ||  | |||||||||||| | |||| |||| |||||||||||    
T  50047160 ttctttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatttgagaaacatattgtattgttttcactcgagtcatggtaattcactt 50047259  T
Q  587 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 647  Q
    ||||| |||||||| |||||| ||   |||||||| |||||||||| |||||||||||||||    
T  50047260 ttatcctaaatcatacaactccatatatgttttgagtgttttgtagcgagaaatcatgtaaa 50047321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 495 - 653
Target Start/End: Complemental strand, 19257931 - 19257773
Alignment:
Q  495 atttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-cta 593  Q
    |||||||| |||||||||| ||| ||||||  ||||||  |  ||||||||| ||| ||||||||||| |||| | ||||||||||||  |||||| |||    
T  19257931 atttgaagaaaaattagaattcatttagagaggttgtcaatgatttgaggaactttctgtattgttttcattctagtcattgtaattcgattttatccta 19257832  T
Q  594 aatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggca 653  Q
    |||||||||| ||  | |||||||||| | |||| |||||||||||| ||||||| ||||    
T  19257831 aatcatgcaagtccttaggtgttttgagtatttt-tagtgagaaatcgtgtaaattggca 19257773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 487 - 648
Target Start/End: Original strand, 31313531 - 31313692
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||| |||| |||  ||| |||||| |||||||  |   || |||||  ||||||||||||||  ||| | || |||||||||||||    
T  31313531 ttctttgcatttgaaggcaaataagagttcatttagagaagttgtcaatgtctttaggaacgttttgtattgttttcgttcaagtcgttgtaattcactt 31313630  T
Q  587 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaat 648  Q
    |||| |||||||||||||||  || |||||||||| | |||| |||| |||||||||||||||    
T  31313631 ttatcctaaatcatgcaacttcataggtgttttgagt-ttttttagtaagaaatcatgtaaat 31313692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 486 - 650
Target Start/End: Complemental strand, 11770131 - 11769966
Alignment:
Q  486 attctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcact 585  Q
    |||||||||||||||||  |||| ||| |  | |||||| | |||||  | |||| |||||  | |||||||||||| | |||  || ||||||||||||    
T  11770131 attctttgcatttgaagataaataagatgagagttagagaatttgtcaatggtttaaggaacatattgtattgttttcactcgtgtcgttgtaattcact 11770032  T
Q  586 tttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcg 650  Q
    |||||| ||||||||| ||||  || ||||| |||| ||||||| |||||||||||||||||||||    
T  11770031 tttatcctaaatcatgaaacttcatgggtgtgttgagtgttttgcagtgagaaatcatgtaaatcg 11769966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 487 - 655
Target Start/End: Original strand, 18795160 - 18795328
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    |||||||||||||||||||||| ||| |||| |||||||| || ||  | ||||||||||  |||||||| ||||| ||| || | ||||||||| ||||    
T  18795160 ttctttgcatttgaaggaaaataagaggtcatttagaggatttatcaatggtttgaggaacattttgtatcgttttcatttgagtaattgtaatttactt 18795259  T
Q  587 ttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    |||| |||| |||| || ||  || |||||||||| |  ||| |||||||||||| |||||||| |||||    
T  18795260 ttatcctaagtcatacagcttcataggtgttttgagtcattt-tagtgagaaatcgtgtaaatcagcaaa 18795328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 656
Target Start/End: Original strand, 34381690 - 34381859
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    |||||||||||||| |||| ||| || | |||||||||||||   | |||||| |||  | || ||||||||| |||||| || ||||||||||||| ||    
T  34381690 tttgcatttgaaggcaaataagatgtaatttagaggagttgttaatggtttgaagaacatattatattgttttcattcgagtcgttgtaattcacttcta 34381789  T
Q  590 -tctaaatcatgcaactcaattggtgttttgaatgttttg--tagtgagaaatcatgtaaatcggcaaat 656  Q
     ||||||||| ||||||  || |||||||||| | |||||  |||||| |||| |||||||||| |||||    
T  34381790 ttctaaatcacgcaacttcataggtgttttgagtattttgtatagtgaaaaataatgtaaatcgacaaat 34381859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 492 - 569
Target Start/End: Complemental strand, 21551010 - 21550933
Alignment:
Q  492 tgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcga 569  Q
    |||||||||||| |||| ||| |||||||||||||||||||  | ||||||||||  |||||||||||||| ||||||    
T  21551010 tgcatttgaaggcaaatcagaggtcaattagaggagttgtctatggtttgaggaacattttgtattgttttcattcga 21550933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 595 - 649
Target Start/End: Complemental strand, 8247684 - 8247630
Alignment:
Q  595 atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||||| || |||||||||| |||||||||||||| |||||||||||||    
T  8247684 atcatgcaactccataggtgttttgagtgttttgtagtgaggaatcatgtaaatc 8247630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 620
Target Start/End: Complemental strand, 15417047 - 15416975
Alignment:
Q  549 ttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttga 620  Q
    |||| ||||||||| |||| | ||||| ||||||||||||||| ||||||||||||||  || ||||||||||    
T  15417047 ttttttattgttttcattcaattcattttaattcacttttatcttaaatcatgcaactgtataggtgttttga 15416975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 638
Target Start/End: Complemental strand, 25266417 - 25266329
Alignment:
Q  551 ttgtattgtttttattcgaatcattgtaattcacttttatctaa-atcatgcaactcaattggtgttttgaatgttttgtagtgagaaa 638  Q
    |||||||||||| | |||| ||||||||||||| ||||||||   |||||| ||||  ||  ||||||||| |||||||||||||||||    
T  25266417 ttgtattgttttcactcgagtcattgtaattcatttttatcttggatcatggaacttcatatgtgttttgagtgttttgtagtgagaaa 25266329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 622 - 656
Target Start/End: Complemental strand, 25494488 - 25494454
Alignment:
Q  622 tgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    ||||||||||||||||||||||||||||| |||||    
T  25494488 tgttttgtagtgagaaatcatgtaaatcgacaaat 25494454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 520 - 603
Target Start/End: Original strand, 12810334 - 12810418
Alignment:
Q  520 tagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaa 603  Q
    |||||||||||||  | ||||||||||  | |||||||||||| |||| | || |||||||||| |||||| ||| |||||||||    
T  12810334 tagaggagttgtcaatggtttgaggaacatattgtattgttttcattcaagtcgttgtaattcatttttatcctagatcatgcaa 12810418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 648
Target Start/End: Complemental strand, 18301089 - 18300977
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatctaaa-tcatgcaactcaattggtgttttgaatgttttgtagtgag 635  Q
    ||||||||||| | ||||| ||||||  ||  | || |||||||| ||||||||| ||| ||||||||||  || |||||||||| ||||||  |||||     
T  18301089 gtttgaggaatatattgtactgttttctttaaagtcgttgtaattgacttttatcgaaaatcatgcaacttcataggtgttttgagtgttttaaagtgat 18300990  T
Q  636 aaatcatgtaaat 648  Q
     ||||||||||||    
T  18300989 gaatcatgtaaat 18300977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 622 - 650
Target Start/End: Complemental strand, 23519768 - 23519740
Alignment:
Q  622 tgttttgtagtgagaaatcatgtaaatcg 650  Q
    |||||||||||||||||||||||||||||    
T  23519768 tgttttgtagtgagaaatcatgtaaatcg 23519740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 622 - 650
Target Start/End: Complemental strand, 23521729 - 23521701
Alignment:
Q  622 tgttttgtagtgagaaatcatgtaaatcg 650  Q
    |||||||||||||||||||||||||||||    
T  23521729 tgttttgtagtgagaaatcatgtaaatcg 23521701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 448 - 649
Target Start/End: Original strand, 1726 - 1926
Alignment:
Q  448 gaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaat 547  Q
    ||||||||||| |||||||   ||||| ||||||  |||||||||||||||||||||| ||||||||||||||| |||| ||||| || |||||| |||     
T  1726 gaataacatatgatgttttgc-ctatgtttttagcctaattctttgcatttgaaggaatattagaagtcaattataggatttgtcattggtttgaagaac 1824  T
Q  548 tttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaa 646  Q
     ||||||||||||||  |||||  | ||||||||||| |||||| | ||||||||||||  | | ||||||||  ||||||||| | |||||||||||||    
T  1825 cttttgtattgttttcgttcgagccgttgtaattcac-tttatctttaatcatgcaacttcacttgtgttttgggtgttttgtaattagaaatcatgtaa 1923  T
Q  647 atc 649  Q
    |||    
T  1924 atc 1926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 438 - 595
Target Start/End: Original strand, 12032 - 12189
Alignment:
Q  438 attgatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttg 537  Q
    |||||| || || |||||||| |||| |||  ||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||| |||||  | |    
T  12032 attgataatggattaacatatgatgtctttagctatgtttttagtgtaattatttgcatttgaaggtaaattagaagtctattagaggaattgtcaatag 12131  T
Q  538 tttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatctaaa 595  Q
    ||||||||| ||||||||||||||| |||||  || || ||||||||  |||||||||    
T  12132 tttgaggaactttttgtattgttttcattcgtgtcgttttaattcacacttatctaaa 12189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 578 - 656
Target Start/End: Original strand, 12315 - 12393
Alignment:
Q  578 aattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    |||||||| |||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||| |||||    
T  12315 aattcactcttatctaaatcatgcaactccataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaat 12393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 451 - 595
Target Start/End: Original strand, 1609 - 1753
Alignment:
Q  451 taacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaatttt 550  Q
    |||||||| |||| |||  ||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||| |||||  | |||||||||| |||    
T  1609 taacatatgatgtctttagctatgtttttagtgtaattatttgcatttgaaggtaaattagaagtctattagaggaattgtcaatagtttgaggaacttt 1708  T
Q  551 ttgtattgtttttattcgaatcattgtaattcacttttatctaaa 595  Q
    |||||||||||| |||||  || || ||||||||  |||||||||    
T  1709 ttgtattgttttcattcgtgtcgttttaattcacacttatctaaa 1753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 578 - 649
Target Start/End: Original strand, 1879 - 1950
Alignment:
Q  578 aattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||| |||||||||||||||||||| || ||||||||||  |||||||||||||||||| ||||||||    
T  1879 aattcactcttatctaaatcatgcaactccataggtgttttgagagttttgtagtgagaaatcctgtaaatc 1950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 451 - 595
Target Start/End: Complemental strand, 24507756 - 24507612
Alignment:
Q  451 taacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaatttt 550  Q
    |||||||| |||| |||  ||||| ||||||||||||| |||||||||||||| |||||||||||| ||||||||| |||||  | |||||||||| |||    
T  24507756 taacatatgatgtctttagctatgtttttagtgtaattatttgcatttgaaggtaaattagaagtctattagaggaattgtcaatagtttgaggaacttt 24507657  T
Q  551 ttgtattgtttttattcgaatcattgtaattcacttttatctaaa 595  Q
    |||||||||||| |||||  || || ||||||||  |||||||||    
T  24507656 ttgtattgttttcattcgtgtcgttttaattcacacttatctaaa 24507612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 537 - 646
Target Start/End: Complemental strand, 17860534 - 17860424
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatct-aaatcatgcaactcaattggtgttttgaatgttttgtagtgag 635  Q
    ||||||||||  ||||||||| |||| | |||| ||||||| ||| |||||||||| |||||||||||||| ||  ||| ||||| ||||||||||||||    
T  17860534 gtttgaggaacattttgtattattttcactcgagtcattgtcatttacttttatcttaaatcatgcaactccatacgtgctttgagtgttttgtagtgag 17860435  T
Q  636 aaatcatgtaa 646  Q
    |||||||||||    
T  17860434 aaatcatgtaa 17860424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 496 - 603
Target Start/End: Complemental strand, 14768395 - 14768287
Alignment:
Q  496 tttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta-tctaa 594  Q
    |||||||| |||| |||  | |||||||||||||||| || |||||||||||||||||||||| ||| |||||| | |||||||||||| |||| |||||    
T  14768395 tttgaaggcaaatgagagattaattagaggagttgtcattggtttgaggaattttttgtattggtttcattcgagttattgtaattcacatttattctaa 14768296  T
Q  595 atcatgcaa 603  Q
    | |||||||    
T  14768295 aacatgcaa 14768287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 505 - 651
Target Start/End: Complemental strand, 9943267 - 9943121
Alignment:
Q  505 aaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaa 603  Q
    |||| ||| |||| ||||||||||||||  | ||||||||||| |||||||| ||| | |||| |    ||||||||||||||||| |||||||||||||    
T  9943267 aaataagaggtcatttagaggagttgtccatcgtttgaggaatattttgtatagttatcattcaagctgttgtaattcacttttatcctaaatcatgcaa 9943168  T
Q  604 ctcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 651  Q
    ||| || |||||||| | | |||| || ||||||||||||||||||||    
T  9943167 ctccataggtgtttttagtatttt-tattgagaaatcatgtaaatcgg 9943121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 578 - 649
Target Start/End: Complemental strand, 24507486 - 24507415
Alignment:
Q  578 aattcacttttatctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||| |||||||||||||||||||| || ||||||||||  |||||||||||||||||| ||||||||    
T  24507486 aattcactcttatctaaatcatgcaactccataggtgttttgagagttttgtagtgagaaatcctgtaaatc 24507415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 647
Target Start/End: Complemental strand, 26512910 - 26512753
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttt- 588  Q
    |||||||||||||| |||| ||| |||| ||||||||||||||  | ||||| | ||  |||||||||||||| |||||| || |||||||||||||||     
T  26512910 tttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttgtgtaacattttgtattgttttcattcgattcgttgtaattcactttta 26512811  T
Q  589 atctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 647  Q
    | ||| |||||||||| | || | |||||||| |  ||  |||||||||||||||||||    
T  26512810 acctagatcatgcaacccgatagctgttttgagt-cttcctagtgagaaatcatgtaaa 26512753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 490 - 647
Target Start/End: Complemental strand, 26518026 - 26517869
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttt- 588  Q
    |||||||||||||| |||| ||| |||| ||||||||||||||  | ||||| | ||  |||||||||||||| |||||| || |||||||||||||||     
T  26518026 tttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggtttgtgtaacattttgtattgttttcattcgattcgttgtaattcactttta 26517927  T
Q  589 atctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 647  Q
    | ||| |||||||||| | || | |||||||| |  ||  |||||||||||||||||||    
T  26517926 acctagatcatgcaacccgatagctgttttgagt-cttcctagtgagaaatcatgtaaa 26517869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 490 - 655
Target Start/End: Complemental strand, 32930605 - 32930440
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    |||||||||||||| |||| ||| |||| ||||||||||||||  | ||||| ||||  |||||| ||||||  ||  || || || |||||||||||||    
T  32930605 tttgcatttgaaggcaaataagatgtcatttagaggagttgtcaatggtttgcggaacattttgttttgtttccataagagtcgttttaattcactttta 32930506  T
Q  590 t-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaa 655  Q
    | || || ||||||| |  || | |||||||| | |||| |||||||||||||||||||| ||||||    
T  32930505 tccttaaacatgcaatttgatagatgttttgagtctttt-tagtgagaaatcatgtaaattggcaaa 32930440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 519 - 656
Target Start/End: Complemental strand, 16387352 - 16387221
Alignment:
Q  519 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatctaaa---tcatgcaactcaattggtgt 615  Q
    ||||| ||||||||  | ||||||||||||| |||||||||||||||||||  | |||||||||||  |||||| ||   |||||||||||             
T  16387352 ttagatgagttgtcaatggtttgaggaatttattgtattgtttttattcgagccgttgtaattcaccgttatcttaaatctcatgcaactc--------- 16387262  T
Q  616 tttgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    | | |||||||| |||| |||||||||||||||||||||||    
T  16387261 tataaatgttttatagtaagaaatcatgtaaatcggcaaat 16387221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 648
Target Start/End: Original strand, 15998599 - 15998652
Alignment:
Q  595 atcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaat 648  Q
    |||||||||||  || |||||||||| |||||||||||||| ||||||||||||    
T  15998599 atcatgcaacttcataggtgttttgagtgttttgtagtgaggaatcatgtaaat 15998652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 519 - 606
Target Start/End: Complemental strand, 13759555 - 13759467
Alignment:
Q  519 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta-tctaaatcatgcaactc 606  Q
    ||||||||||||||  | ||||||||||  | ||| |||||||| | ||||||| |||||||||| ||||| |||| ||||||||||||    
T  13759555 ttagaggagttgtcaatggtttgaggaacatattgaattgttttcactcgaatcgttgtaattcaattttattctatatcatgcaactc 13759467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 487 - 587
Target Start/End: Original strand, 13835580 - 13835680
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    |||||| ||| |||||  |||| |||||||| | |||||||||||| || ||||||||||  ||| || ||||||||||| || ||| | ||||||||||    
T  13835580 ttcttttcatatgaagacaaataagaagtcattaagaggagttgtccttggtttgaggaacatttggtgttgtttttatttgattcactataattcactt 13835679  T
Q  587 t 587  Q
    |    
T  13835680 t 13835680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 528
Target Start/End: Complemental strand, 9396735 - 9396694
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagt 528  Q
    |||||||||||||||||||||| ||| |||| ||||||||||    
T  9396735 ttctttgcatttgaaggaaaataagaggtcatttagaggagt 9396694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 647
Target Start/End: Complemental strand, 14924553 - 14924393
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    ||||||||||||||||| |||| | | || | ||||||||||||||  | ||||||||||   ||| |||  | || |||||| || |||||  ||||||    
T  14924553 ttctttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggtttgaggaacaatttatatcttattcattcgagtcgttgtacctcactt 14924454  T
Q  587 tta-tctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaa 647  Q
    ||| |||||||||||||| |  || || ||||||| | ||||  ||||||||||||||||||    
T  14924453 ttattctaaatcatgcaattatataggggttttgagtctttt-aagtgagaaatcatgtaaa 14924393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 587
Target Start/End: Complemental strand, 13830938 - 13830870
Alignment:
Q  519 ttagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttt 587  Q
    ||||| |||||||| || ||||||||||  ||| || ||||||||||| || ||| |||||||||||||    
T  13830938 ttagatgagttgtccttcgtttgaggaacatttggtgttgtttttatttgattcagtgtaattcacttt 13830870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 649
Target Start/End: Original strand, 16439501 - 16439599
Alignment:
Q  550 tttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaat 648  Q
    ||||||||||||||||| || || || ||||| ||||||||| ||||| ||||||||  |   ||||||||| | |||| ||||||||||||||||||||    
T  16439501 tttgtattgtttttatt-gagtcgttataattaacttttatcctaaataatgcaacttcacatgtgttttgagtctttt-tagtgagaaatcatgtaaat 16439598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 487 - 606
Target Start/End: Original strand, 58724 - 58844
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||  | |||||||||| ||||||||||||||| |||||  |||||||||| ||  |    
T  58724 ttctatgcatttgaaggcaaattagaagtcaatcagaggagttgtcaatggtttgaggaactttttgtattgttttcattcgggtcattgtaatccaggt 58823  T
Q  587 ttat-ctaaatcatgcaactc 606  Q
    |||| || |||||||||||||    
T  58824 ttatcctgaatcatgcaactc 58844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 490 - 620
Target Start/End: Complemental strand, 11830 - 11699
Alignment:
Q  490 tttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactttta 589  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||  |  ||||| ||| ||||||||| ||||| ||| ||||| |||||||||| ||||     
T  11830 tttgcatttgaaggcaaaatagaagtcatttagaggagttgtcaatgatttgatgaactttttgtatagttttcatttgaatcgttgtaattcagttttg 11731  T
Q  590 t-ctaaatcatgcaactcaattggtgttttga 620  Q
    | |||||||||||||||  || ||||||||||    
T  11730 tcctaaatcatgcaactacatgggtgttttga 11699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 487 - 651
Target Start/End: Original strand, 1422 - 1586
Alignment:
Q  487 ttctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcactt 586  Q
    |||||| ||| | ||||||||| ||| |||| ||||||||||||||  |  ||||||||   |||||||||||||| |||||| ||||| ||||||||||    
T  1422 ttcttttcatcttaaggaaaataagaggtcatttagaggagttgtcaatattttgaggagcattttgtattgttttcattcgattcattttaattcactt 1521  T
Q  587 ttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcgg 651  Q
    ||||| | |||||||||||||||  | ||||| || | |||| || ||| ||||||||||||||||    
T  1522 ttatcattaatcatgcaactcaaaagatgtttcgagtctttttta-tgaaaaatcatgtaaatcgg 1586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 571 - 657
Target Start/End: Complemental strand, 27007 - 26920
Alignment:
Q  571 tcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaatt 657  Q
    ||||||||||| ||||||||| |||||||| |||||  || |||||||||| ||||| ||||||||||||||||||||||| ||||||    
T  27007 tcattgtaatttacttttatcctaaatcatacaactacataggtgttttgagtgtttagtagtgagaaatcatgtaaatcgacaaatt 26920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 537 - 655
Target Start/End: Original strand, 21426 - 21545
Alignment:
Q  537 gtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgag 635  Q
    |||||||||| || |||||||||||| | |||| || ||||||||||||||||| |||||||||||||||  ||   |||||||  ||||||| ||||||    
T  21426 gtttgaggaacttattgtattgttttcactcgagtcgttgtaattcacttttatcctaaatcatgcaacttcataattgttttgggtgttttgcagtgag 21525  T
Q  636 aaatcatgtaaatcggcaaa 655  Q
     |||||||||||||| ||||    
T  21526 gaatcatgtaaatcgacaaa 21545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 441 - 655
Target Start/End: Complemental strand, 2013 - 1801
Alignment:
Q  441 gatgatagaataacatattatgttttttactatgcttttagtgtaattctttgcatttgaaggaaaattagaagtcaattagaggagttgtcgtttgttt 540  Q
    |||||| |||||  |||| |||||||| |||||| |||||||    |||||||||||| ||||||  |||||| | ||||||| ||||||||  |  |||    
T  2013 gatgatggaatataatatgatgtttttaactatgtttttagttattttctttgcatttaaaggaa--ttagaacttaattagatgagttgtcaatgattt 1916  T
Q  541 gaggaattttttgtattgtttttattcgaatcattgtaattcacttttat-ctaaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaat 639  Q
     ||||| ||||||||||||||| |||| | ||||||||||  | |||||| |||||| ||||||||   | |||  ||||||| |||| |||||||||||    
T  1915 aaggaaatttttgtattgttttcattctagtcattgtaatctagttttatcctaaattatgcaactttgtaggttatttgaatctttt-tagtgagaaat 1817  T
Q  640 catgtaaatcggcaaa 655  Q
    |||| |||| ||||||    
T  1816 catggaaattggcaaa 1801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 578 - 656
Target Start/End: Complemental strand, 13116 - 13037
Alignment:
Q  578 aattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
    |||||||||||||| ||||| ||||||||| |  |||||||||| |||||||||||||| |||||||||||||| |||||    
T  13116 aattcacttttatcctaaattatgcaactccacaggtgttttgagtgttttgtagtgaggaatcatgtaaatcgacaaat 13037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 551 - 656
Target Start/End: Complemental strand, 8781 - 8675
Alignment:
Q  551 ttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaattggtgttttgaatgttttgtagtgagaaatcatgtaaatc 649  Q
    |||||||||||| | |||| |  | |||||||||||||||| |||||  |||||||| ||   ||||||||||||||||||||||| |||||||||||||    
T  8781 ttgtattgttttcactcgacttgtagtaattcacttttatcctaaattgtgcaactccatatatgttttgaatgttttgtagtgaggaatcatgtaaatc 8682  T
Q  650 ggcaaat 656  Q
    | |||||    
T  8681 gacaaat 8675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 511 - 656
Target Start/End: Complemental strand, 228296 - 228152
Alignment:
Q  511 gaagtcaattagaggagttgtcgtttgtttgaggaattttttgtattgtttttattcgaatcattgtaattcacttttatc-taaatcatgcaactcaat 609  Q
    ||||||||||||||||||| || ||  |||| ||||  ||||  |||||||| |||||| || |||||||||| ||||||| ||||||||||||| | |     
T  228296 gaagtcaattagaggagttttcattgatttgtggaacattttaaattgttttcattcgagtcgttgtaattcatttttatcataaatcatgcaaccctaa 228197  T
Q  610 tggtgttttgaatgttttgtagtgagaaatcatgtaaatcggcaaat 656  Q
      |||  ||| ||||||| |||||||||||||||||||||| |||||    
T  228196 aagtg--ttgtatgttttatagtgagaaatcatgtaaatcgacaaat 228152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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