View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3022_low_3 (Length: 377)
Name: NF3022_low_3
Description: NF3022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3022_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 3421742 - 3422026
Alignment:
| Q |
12 |
accacagatcacagtgacatttgttaacggtgtggaagaagcgtttgatgcaacatcaacaccggttcaccgtataacgaagatgattctggaaaagggc |
111 |
Q |
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| T |
3421742 |
accacagatcacagtgacatttgttaatggtgtggaagaagcgtttgatgcaacatcaacaccggttcaccgtataacgaggatgattctggaaaagggc |
3421841 |
T |
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| Q |
112 |
cagctccttgagaccgaacaaatgtttcgtgaagcaggggaacaatggcctgttatcattcctgatgaagaaccctctcaacatgcacctggcaccaaag |
211 |
Q |
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| T |
3421842 |
cagctccttgagaccgaacaaatgtttcgtgaagcaggggaacaatggcctgttatcattcccgatgaagaactctctcaacatgcacctggcaccaaag |
3421941 |
T |
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| Q |
212 |
tgcgttttctttattttaagctccttattcatg---nnnnnnngtcattcatttctttgaataaatttattattgcaatgctgtg |
293 |
Q |
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| T |
3421942 |
tgcgttttctttattttaagctccttattcatgttttttttttgtcattcatttctttgaataaatttattatttcaatgctgtg |
3422026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 326 - 365
Target Start/End: Original strand, 3422059 - 3422098
Alignment:
| Q |
326 |
gatctgattcggtttctaacatggttcatagcaactaact |
365 |
Q |
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| T |
3422059 |
gatctgattcggtttctaacatggtccatagcaactaact |
3422098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 52948267 - 52948470
Alignment:
| Q |
16 |
cagatcacagtgacatttgttaacggtgtggaagaagcgtttgatgcaacatcaacaccggttcaccgtataacgaagatgattctggaaaagggccagc |
115 |
Q |
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| T |
52948267 |
cagatcaccgtcacgttcgtcaacggcgtggaagaagctttcgatgctacatcaacaccggttcaccgtataaccaagatgattctggaaaagggtcagt |
52948366 |
T |
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| Q |
116 |
tccttgagaccgaacaaatgtttcgtgaagcaggggaacaatggcctgttatcattcctgatgaagaaccctctcaacatgcacctggcaccaaagtgcg |
215 |
Q |
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| || || || ||||| ||||| |||||||| || |||||||||||||||||||| ||||||||||||| |||||| |||||||| |||||||||||| | |
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| T |
52948367 |
tactcgaaactgaacagatgttccgtgaagctggagaacaatggcctgttatcatacctgatgaagaactctctcagcatgcacccggcaccaaagtgag |
52948466 |
T |
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| Q |
216 |
tttt |
219 |
Q |
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|||| |
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| T |
52948467 |
tttt |
52948470 |
T |
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