View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3022_low_5 (Length: 284)
Name: NF3022_low_5
Description: NF3022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3022_low_5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 166 - 284
Target Start/End: Complemental strand, 31599407 - 31599289
Alignment:
| Q |
166 |
tgaaaagcaaagagagcttgatgatgaatatgtgagcacttttagacttaaagccgtgaacaatggagattctataagttattcagaaaaagaagttcat |
265 |
Q |
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| T |
31599407 |
tgaaaagcaaagagagcttgatgatgaatatgtgagcacttttagacttaaagccgtgaacaatggagattctataagttattcagaaaaagaagttcat |
31599308 |
T |
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| Q |
266 |
actagtgatgatattcccc |
284 |
Q |
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||||||||||||||||||| |
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| T |
31599307 |
actagtgatgatattcccc |
31599289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 31599526 - 31599401
Alignment:
| Q |
15 |
aaaaacaagcaacatcgattgtcctttctttttcacaaacaatcaaatgtagaaggtgttatgagagttcatttgttaggagaagctgctaaagttgata |
114 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31599526 |
aaaaacaagcaacatcgattctcctttctttttcacaaacaatcaaatgtagaaggtgttatgagagttcatttgttaggagaagctgcaaaagttgata |
31599427 |
T |
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| Q |
115 |
aaacaccacatagagcatgtgaaaag |
140 |
Q |
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| T |
31599426 |
aaacaccacatagagcatgtgaaaag |
31599401 |
T |
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