View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3022_low_7 (Length: 236)
Name: NF3022_low_7
Description: NF3022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3022_low_7 |
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| [»] scaffold1157 (1 HSPs) |
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Alignment Details
Target: scaffold1157 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: scaffold1157
Description:
Target: scaffold1157; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 732 - 952
Alignment:
| Q |
1 |
attgtgacatattgatttggaaaacaggaacaacatcaaagaggagcagctaatggaattgctatgacatcaatgtcactattcaaaactattggacctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
732 |
attgtgacatattgatttggaaaacaggaacaacatcaaagaggagcagctaatggaattgctatgacatcaatgtctctattcaaagctattggacctg |
831 |
T |
|
| Q |
101 |
ctgcaggtggtacaatgtgagtaatcttcatctaannnnnnnncttcattagtagaaattttaatctacatgattttttactacacttaagatatgctat |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
832 |
ctgcaggtggtacaatgtgagtaatcttcatctaa-tttttttcttcattagtagaaattttaatctacatgcttttttactacacttaagatatgctat |
930 |
T |
|
| Q |
201 |
taaaaatcattctgaattttct |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
931 |
taaaaatcattctgaattttct |
952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 16568403 - 16568209
Alignment:
| Q |
1 |
attgtgacatattgatttggaaaacaggaacaacatcaaagaggagcagctaatggaattgctatgacatcaatgtcactattcaaaactattggacctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
16568403 |
attgtgacatattgatttggaaaacaggaacaacatcaaagaggagcagctaatggaattgctatgacatcaatgtctctattcaaagctattggacctg |
16568304 |
T |
|
| Q |
101 |
ctgcaggtggtacaatgtgagtaatcttcatctaannnnnnnncttcattagtagaaattttaatctacatgattttttactacacttaagatatg |
196 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16568303 |
ctgcaggtggtacaatgtgagtaatcttcatctaa-tttttttcttcattagtagaaattttaatctacatgcttttttactacacttaagatatg |
16568209 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 16518272 - 16518056
Alignment:
| Q |
2 |
ttgtgacatattgatttggaaaacaggaacaacatcaaagaggagcagctaatggaattgctatgacatcaatgtcactattcaaaactattggacctgc |
101 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||| || |||||||| ||| |||||||| | ||||| ||||||||| | ||||||||||| |
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| T |
16518272 |
ttgtggcatattgatttggaaaacaggaacaacaccaaagaggggctgctaatggcatttctatgacagctatgtctctattcaaagcgattggacctgc |
16518173 |
T |
|
| Q |
102 |
tgcaggtggtacaatgtgagtaatcttcatctaannnnnnnncttcattagtagaaattttaatctacatgattttttactacacttaagatatgctatt |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
16518172 |
tgcaggtggtacaatgtgagtagtcttcatctaa--ttttttcttcattagtagaaattttaatctacatgcttttttactacacttaagatatgctatt |
16518075 |
T |
|
| Q |
202 |
aaaaatcattctgaatttt |
220 |
Q |
| |
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| |||| ||||| |||||| |
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|
| T |
16518074 |
ataaatgattctcaatttt |
16518056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16526813 - 16526598
Alignment:
| Q |
1 |
attgtgacatattgatttggaaaacaggaacaacatcaaagaggagcagctaatggaattgctatgacatcaatgtcactattcaaaactattggacctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||| ||||| ||||||||| | |||||||||| |
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|
| T |
16526813 |
attgtgacatattgatttggaaaacaggaacaacaccaaagaggggcagctaatggcctttctatgacagggatgtctctattcaaagccattggacctg |
16526714 |
T |
|
| Q |
101 |
ctgcaggtggtacaatgtgagtaatcttcatctaannnnnnnncttcattagtagaaattttaatctacatgattttttactacacttaagatatgctat |
200 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
16526713 |
ctgcaggcggtacaatgtgagtagtctttctctaa------ttcttcattagcagaaattttaatctacatgcttttttactacacttaagatatactat |
16526620 |
T |
|
| Q |
201 |
taaaaatcattctgaattttct |
222 |
Q |
| |
|
|||||||||||| ||||||||| |
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|
| T |
16526619 |
taaaaatcattcagaattttct |
16526598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 16587108 - 16586903
Alignment:
| Q |
11 |
attgatttggaaaacaggaacaacatcaaagaggagcagctaatggaattgctatgacatcaatgtcactattcaaaactattggacctgctgcaggtgg |
110 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| | ||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
16587108 |
attgatttgcaaaacaggaacaacaccaaagaggagcagctaatggaatttctatgacagctatgtctctattcaaagctattggacctgctgcaggtgg |
16587009 |
T |
|
| Q |
111 |
tacaatgtgagtaatcttcatctaannnnnnnncttcattagtag-----------aaattttaatctacatgattttttactacacttaagatatgcta |
199 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||| || |||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
16587008 |
tacaatgtgagtactcttcctctaa--tttcttcttcattagtagaattttagtataattttttatctacatgattttttactacacttaagttatgcta |
16586911 |
T |
|
| Q |
200 |
ttaaaaat |
207 |
Q |
| |
|
|||||||| |
|
|
| T |
16586910 |
ttaaaaat |
16586903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 26368031 - 26367930
Alignment:
| Q |
21 |
aaaacaggaacaacatcaaagaggagcagctaatggaattgctatgacatcaatgtcactattcaaaactattggacctgctgcaggtggtacaatgtga |
120 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |||||||||| ||||| || |||| ||||||| || ||||| |
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|
| T |
26368031 |
aaaataggaacaacatcaaagaggggcagctaatggcattgctatgactggaatgtcaatattcaaaacaattggtccagctggaggtggtgcagtgtga |
26367932 |
T |
|
| Q |
121 |
gt |
122 |
Q |
| |
|
|| |
|
|
| T |
26367931 |
gt |
26367930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 2609533 - 2609632
Alignment:
| Q |
23 |
aacaggaacaacatcaaagaggagcagctaatggaattgctatgacatcaatgtcactattcaaaactattggacctgctgcaggtggtacaatgtgagt |
122 |
Q |
| |
|
||||||| |||| ||||||||| |||||||| || ||||||||||| ||||||| |||||||||| ||||| || |||| ||||||| || ||||||| |
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|
| T |
2609533 |
aacaggagcaacgtcaaagaggggcagctaacggcattgctatgactggaatgtcaatattcaaaacaattggtccagctggaggtggtgcagtgtgagt |
2609632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 39163047 - 39163145
Alignment:
| Q |
24 |
acaggaacaacatcaaagaggagcagctaatggaattgctatgacatcaatgtcactattcaaaactattggacctgctgcaggtggtacaatgtgagt |
122 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| ||||| | |||||| ||||||||| || || ||||||| ||| ||| || ||||||| |
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|
| T |
39163047 |
acaggaacaacatcaaagaggggcagctaatggcattgcaatgactactatgtcagcattcaaaacaataggtcctgctggaggcggtgcattgtgagt |
39163145 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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