View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3023-Insertion-1 (Length: 1226)

Name: NF3023-Insertion-1
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3023-Insertion-1
NF3023-Insertion-1
[»] chr5 (15 HSPs)
chr5 (8-1075)||(1639921-1640996)
chr5 (462-933)||(1071443-1071914)
chr5 (462-941)||(1053350-1053830)
chr5 (462-930)||(1065719-1066187)
chr5 (490-990)||(1044041-1044544)
chr5 (462-933)||(1033714-1034185)
chr5 (462-919)||(1058638-1059095)
chr5 (462-994)||(1046620-1047158)
chr5 (112-186)||(1638600-1638674)
chr5 (40-80)||(3780976-3781016)
chr5 (40-80)||(5787475-5787515)
chr5 (40-80)||(21344553-21344593)
chr5 (40-80)||(40914109-40914149)
chr5 (51-80)||(25837622-25837651)
chr5 (51-80)||(38507960-38507989)
[»] chr3 (17 HSPs)
chr3 (860-918)||(44171260-44171318)
chr3 (860-918)||(44191556-44191614)
chr3 (40-105)||(55198679-55198743)
chr3 (36-80)||(29726378-29726422)
chr3 (36-80)||(29726470-29726514)
chr3 (36-80)||(29726562-29726606)
chr3 (47-80)||(7328747-7328780)
chr3 (551-616)||(12121342-12121407)
chr3 (40-80)||(14626732-14626772)
chr3 (40-80)||(29726286-29726326)
chr3 (40-80)||(32956414-32956454)
chr3 (40-80)||(46967561-46967601)
chr3 (40-79)||(39530500-39530539)
chr3 (37-80)||(54008311-54008354)
chr3 (51-80)||(24312962-24312991)
chr3 (51-80)||(37331703-37331732)
chr3 (40-81)||(43883855-43883896)
[»] chr8 (2 HSPs)
chr8 (40-80)||(41569605-41569645)
chr8 (40-78)||(17922147-17922185)
[»] chr4 (9 HSPs)
chr4 (53-105)||(36721815-36721864)
chr4 (40-81)||(48088006-48088047)
chr4 (40-78)||(55616920-55616958)
chr4 (40-78)||(55624224-55624262)
chr4 (51-80)||(39923924-39923953)
chr4 (40-77)||(46495638-46495675)
chr4 (40-81)||(48088098-48088139)
chr4 (51-80)||(49632324-49632353)
chr4 (40-81)||(51394094-51394135)
[»] scaffold0136 (1 HSPs)
scaffold0136 (36-80)||(22548-22592)
[»] chr7 (8 HSPs)
chr7 (40-80)||(5082672-5082712)
chr7 (40-80)||(25099532-25099572)
chr7 (40-80)||(25250153-25250193)
chr7 (40-80)||(26154019-26154059)
chr7 (40-80)||(42644171-42644211)
chr7 (51-80)||(5639661-5639690)
chr7 (51-80)||(36399902-36399931)
chr7 (51-80)||(39976051-39976080)
[»] chr6 (2 HSPs)
chr6 (40-80)||(4156443-4156483)
chr6 (45-78)||(28542397-28542430)
[»] chr2 (4 HSPs)
chr2 (40-80)||(3463254-3463294)
chr2 (40-80)||(12017755-12017795)
chr2 (40-80)||(33363663-33363703)
chr2 (40-80)||(42230518-42230558)
[»] scaffold0001 (1 HSPs)
scaffold0001 (551-618)||(65866-65933)
[»] chr1 (3 HSPs)
chr1 (50-80)||(37215178-37215208)
chr1 (38-80)||(40094322-40094364)
chr1 (51-80)||(17622770-17622799)
[»] scaffold0305 (1 HSPs)
scaffold0305 (51-80)||(16890-16919)


Alignment Details
Target: chr5 (Bit Score: 929; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 929; E-Value: 0
Query Start/End: Original strand, 8 - 1075
Target Start/End: Original strand, 1639921 - 1640996
Alignment:
Q  8 gaagaagaatatgaataatatgttatacaaactacttcctccatctttaaatataagcaaaattgactttttatttaatgatgtatgtggtccatattgg 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  1639921 gaagaagaatatgaataatatgttatacaaattacttcctccatctttaaatacaagcaaaattaactttttatttaatgatgtatgtggtccatattgg 1640020  T
Q  108 taagtgtattatggatacataaattgaaaacatgggacatatcaccataaaggatgaatataatcatgagtttctctcagaattgaggaagcaattgaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1640021 taagtgtattatggatacataaattgaaaacatgggacatatcaccataaaggatgaatataatcatgagtttctctcagaattgaggaagcaattgaaa 1640120  T
Q  208 tctttgtcagaattctacatcctcaaagacaataaaagctgaaattttggacttggagaaactataaactccaagtatatatatagagtactcgagggta 307  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||    
T  1640121 tctttgtcagaattctacatcctcaaacacaataaaagctgaaattttggacttggagaaactataaactccaagtata----tagagtactcgagggta 1640216  T
Q  308 tgtaatgaatatttatcgatattaattttaaaactaaaagttggagtttgagaaacttgtaaataggattaaagctgcaatgattaagtagtattatagt 407  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1640217 tgtaatgaatatttatcgatattatttttaaaactaaaagttggagtttgagaaacttgtaaataggattaaagctgcaatgattaagtagtattatagt 1640316  T
Q  408 atattggatcattaaatttaaggccttaactaatgtccaaaactatagtttaaccaagaaaagggtaatctgtataaccgagaaccggatcagatgtgta 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1640317 atattggatcattaaatttaaggccttaactaatgtccaaaactatagtttaaccaagaaaagggtagtctgtataaccgagaaccggatcagatgtgta 1640416  T
Q  508 gaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttggtaaatctggattagatataaacaagcgaccataagcaacaagatct 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1640417 gaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttggtaaatctggattagatataaacaagcgaccataagcaacaagatct 1640516  T
Q  608 gtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggcaactataaaagtgccattgaaggcttttctcattggcaccaagctgt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1640517 gtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggcaactataaaagttccattgaaggcttttctcattggcaccaagctgt 1640616  T
Q  708 gaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgacagtaaagaatattgtatttactgagggcattaaccatataaagccc 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1640617 gaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgacagtaaagaatattgtatttactgagggcattaaccatataaagccc 1640716  T
Q  808 caattcttcaggattggagtctccacattctccatattctgcgaaaggcgataatctaattccaactctttctgcacctatctcattcacaacagcttca 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1640717 caattcttcaggattggagtctccacattctccatattctgcgaaaggcgataatctaattccaactctttctgcacctatctcattcacaactgcttca 1640816  T
Q  908 acaatttccaaagcgaatcgacaac-gttttcaa-gtttccgccgtatttatcagttc-gtcattcactttatctttcataaattgctc-agta-gta-- 1000  Q
    ||||||||||||||||||||||||| |||||||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| |||      
T  1640817 acaatttccaaagcgaatcgacaacggttttcaagggttccaccgtatttatcagttcggtcattcactttatctttcataaattgctcaagtaggtaac 1640916  T
Q  1001 cgtgagtcccatggatctcaactccatcaaaa-ctgc-atttgcgcac--acacaagtatgttagtgca-tacatgattt 1075  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||||||   |||||||||||||||||| ||||||||||    
T  1640917 cgtgagccccatggatctcaactccatcaaaacctgcaatttgcgcaccaccacaagtatgttagtgcattacatgattt 1640996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 6e-99
Query Start/End: Original strand, 462 - 933
Target Start/End: Complemental strand, 1071914 - 1071443
Alignment:
Q  462 caagaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttgg 561  Q
    ||||||||||||| || |||||||| ||||| ||||||||   ||| ||||| |||| |||||||||||| ||||||||||| || || |||||||||||    
T  1071914 caagaaaagggtagtcagtataacctagaactggatcagaaacgtaaaatgtctccctgttatacttgtttagaggagcatcaagtgcaaatctctttgg 1071815  T
Q  562 taaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggca 661  Q
     ||||||||||||| ||  ||||| ||||||||  |||| || |||| | | |||||| |||||||||  |||||||| |||||    || ||||| |||    
T  1071814 caaatctggattagctaagaacaaacgaccatatacaactaggtctgccctgttttcagctatggcattgatcccatcatgtcggtcgtaacctcctgca 1071715  T
Q  662 actataaaagtgccattgaaggcttttctcattggcaccaagctgtgaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgac 761  Q
    || || |||||||| |||||||| |||||||||||||| | |||||   | ||||||  |||||||  || |||| ||||||||||||||||||||||||    
T  1071714 accatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaacagttatcattcttggttccaccatgtgac 1071615  T
Q  762 agtaaagaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattctccatattctgcgaaaggcgataa 861  Q
    | |||||||||  ||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||  ||| ||||| ||||| |||||    
T  1071614 aataaagaataccgtatttattgagggcattaaccatataaagtcccaattctttagggttggagtctccacattctgaatactctgcaaaaggtgataa 1071515  T
Q  862 tctaattccaactctttctgcacctatctcattcacaacagcttcaacaatttccaaagcgaatcgacaacg 933  Q
    ||| ||||||||||||||||  |||||||||||  ||||||||||||||| ||||||||| || ||||||||    
T  1071514 tcttattccaactctttctgttcctatctcatttgcaacagcttcaacaacttccaaagcaaaccgacaacg 1071443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 462 - 941
Target Start/End: Complemental strand, 1053830 - 1053350
Alignment:
Q  462 caagaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttgg 561  Q
    ||||| ||||||| || |||||||| | ||| |||||||| ||||||||||| ||||  ||||||||||| ||||||||||  || || |||||||||||    
T  1053830 caagagaagggtagtcagtataacctataactggatcagaagtgtagaatgtctccctattatacttgttaagaggagcattaagtgcaaatctctttgg 1053731  T
Q  562 taaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggca 661  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||| | |||||||| |||| ||||  || ||||||||||    ||||||||| | |    
T  1053730 taaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcattgattccatcttgtctttcatagcctccagta 1053631  T
Q  662 actataaaagtgccattgaaggcttttctcattggcaccaagctgtgaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgac 761  Q
    || |||||||| ||||||||  | ||||| |||| ||||||||| | | ||||||||  ||| |||  || | ||| |||||||||||||||||| ||||    
T  1053630 accataaaagttccattgaaaacctttcttattgacaccaagctataatgacattcagttttctcatcaagaatttccattcttggttccaccatatgac 1053531  T
Q  762 agtaaagaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattctccatattctgcgaaaggcgataa 861  Q
    | |||||||||   |||||| |||||||||| ||||||||||| ||||||||||  ||||| ||||||||||| |||||| ||| | | ||||| |||||    
T  1053530 aataaagaataccatatttattgagggcattcaccatataaagtcccaattcttggggatttgagtctccacaatctccaaatttttcaaaaggtgataa 1053431  T
Q  862 tctaattccaactctttctgcacctatctcattcacaacagcttcaacaatttccaaagcgaatcgacaacg-ttttcaag 941  Q
    | | |||||||||||||||||||||||||||||  ||||||||||||||||||||||| | |||| |||||| ||||||||    
T  1053430 ttttattccaactctttctgcacctatctcatttgcaacagcttcaacaatttccaaaacaaatctacaacgattttcaag 1053350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 462 - 930
Target Start/End: Complemental strand, 1066187 - 1065719
Alignment:
Q  462 caagaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttgg 561  Q
    ||||||| ||||| || |||||||| ||||| ||||||||  ||||||| || |||| |||||| ||||| ||||||||||| || || |||||||||||    
T  1066187 caagaaaggggtagtcagtataacctagaactggatcagaaatgtagaacgtctccctgttatatttgttcagaggagcatcaagtgcaaatctctttgg 1066088  T
Q  562 taaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggca 661  Q
    |||||||||||||| ||  ||||| ||||||||  ||||||| |||| | | |||||| |||||||||  |||||||| |||||    || ||||| |||    
T  1066087 taaatctggattagctaagaacaaacgaccatatacaacaaggtctgccctgttttcagctatggcattgatcccatcatgtcggtcgtaacctcctgca 1065988  T
Q  662 actataaaagtgccattgaaggcttttctcattggcaccaagctgtgaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgac 761  Q
    || || |||||||| |||||||| |||||||||||||| | |||||   | ||||||  |||||||  || |||||||||||||||||||||||| ||||    
T  1065987 accatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagttttttcaccaacagttttcattcttggttccaccatatgac 1065888  T
Q  762 agtaaagaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattctccatattctgcgaaaggcgataa 861  Q
    |||||||||||   |||||| |||||||||| ||||||||||| |||||||| |  || |||||||||||||||||| |||| || || ||||| |||||    
T  1065887 agtaaagaataccatatttattgagggcattgaccatataaagtcccaattcattggggttggagtctccacattctgcatactccgcaaaaggtgataa 1065788  T
Q  862 tctaattccaactctttctgcacctatctcattcacaacagcttcaacaatttccaaagcgaatcgaca 930  Q
    ||| ||||||||||||||||| |||||||||||  ||||||||||||||| ||||||||| ||||||||    
T  1065787 tcttattccaactctttctgctcctatctcatttgcaacagcttcaacaacttccaaagcaaatcgaca 1065719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 172; E-Value: 8e-92
Query Start/End: Original strand, 490 - 990
Target Start/End: Complemental strand, 1044544 - 1044041
Alignment:
Q  490 aaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttggtaaatctggattagatataaacaagcga 589  Q
    ||||||||||||  |||||||||| ||||  ||||||||||||||||||||||  || || ||||||||||| ||||||||||| | ||  ||||| |||    
T  1044544 aaccggatcagaaatgtagaatgtctccctattatacttgttgagaggagcattaagtgcaaatctctttggcaaatctggatttgctaagaacaaacga 1044445  T
Q  590 ccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggcaactataaaagtgccattgaaggcttttc 689  Q
    |||||| | |||||||||| ||| |||||| |||| ||||| ||||| |||||||    ||||||||| ||| | || |||| ||||||||| || ||||    
T  1044444 ccataaactacaagatctgccttgttttcagctatagcatcgatcccgtcttgtctgtcatagcctcctgcagccatgaaagagccattgaaagcctttc 1044345  T
Q  690 tcattggcaccaagctgtgaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgacagtaaagaatattgtatttactgagggc 789  Q
    ||||||||||||  |||| | | | |||||   |||||| |   | ||| |||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  1044344 tcattggcaccagactgtaagggctttcaatcgtttcagaagctgattttattcttggttccaccatgtgacagtaaagaatattgtacttattgagggc 1044245  T
Q  790 attaaccatataaagccccaattcttcaggattggagtctccacattctccatattctgcgaaaggcgataatctaattccaactctttctgcacctatc 889  Q
    ||||||||||| ||| |||||||| |  |||||||||||||| | |||| |||||||||| ||||| |||| ||||||||||||| | ||||| ||||||    
T  1044244 attaaccatatgaagtcccaattcattgggattggagtctccgctttctgcatattctgcaaaaggtgatagtctaattccaactttatctgctcctatc 1044145  T
Q  890 tcattcacaacagcttcaacaatttccaaagcgaatcgacaacg-ttttc-aagtttccgccgtatttatcagttc-gtcattcactttatctttcataa 986  Q
    ||||||||||| |||||||||| ||||||||  ||||||||||| || || | |  ||| ||||||| ||| |||| ||||||||||||||||||||| |    
T  1044144 tcattcacaactgcttcaacaacttccaaaggaaatcgacaacgattctcgagggatccaccgtattcatctgttctgtcattcactttatctttcatga 1044045  T
Q  987 attg 990  Q
    ||||    
T  1044044 attg 1044041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 462 - 933
Target Start/End: Complemental strand, 1034185 - 1033714
Alignment:
Q  462 caagaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttgg 561  Q
    ||||||| || || || |||||||| | |||||||||||| ||||||||||| |||| |||||| || ||||||||||| |  || || |||||||| ||    
T  1034185 caagaaagggatagtccgtataacctacaaccggatcagaagtgtagaatgtctccctgttatatttattgagaggagcgtttagtgcaaatctcttcgg 1034086  T
Q  562 taaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggca 661  Q
     ||||||||||| | ||  ||||| ||||||||| |||||||||||| | |||| ||  |||| ||||  |||||||||||||    ||| ||||| |||    
T  1034085 caaatctggattcgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattgatcccatcttgtctgtcataacctcccgca 1033986  T
Q  662 actataaaagtgccattgaaggcttttctcattggcaccaagctgtgaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgac 761  Q
    || || ||||| |||||||| || |||||||| |||||||  |||| | | | |||||   |||||  | | | ||| ||||||||||||||||||||||    
T  1033985 accatgaaagtaccattgaaagcctttctcatgggcaccagactgtaagggctttcaatcgtttcatcatttgattttattcttggttccaccatgtgac 1033886  T
Q  762 agtaaagaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattctccatattctgcgaaaggcgataa 861  Q
    |||||||||||||||| ||| |||||||||||||||||||||| |||||||||   ||||||||||||| | |||||  || ||| || ||||| |||||    
T  1033885 agtaaagaatattgtacttattgagggcattaaccatataaagtcccaattctgtgggattggagtctctagattctgaatgttccgcaaaaggtgataa 1033786  T
Q  862 tctaattccaactctttctgcacctatctcattcacaacagcttcaacaatttccaaagcgaatcgacaacg 933  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| || |||||||||||    
T  1033785 tctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacg 1033714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 462 - 919
Target Start/End: Complemental strand, 1059095 - 1058638
Alignment:
Q  462 caagaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttgg 561  Q
    ||||||||||||| || |||||||| | ||| ||||| || |||||||||||  ||| |||||||||||| ||||||||||  || || |||||||| ||    
T  1059095 caagaaaagggtagtcagtataacctataactggatctgaagtgtagaatgtcgccctgttatacttgtttagaggagcattaagtgcaaatctcttcgg 1058996  T
Q  562 taaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggca 661  Q
     ||||||||||||| ||  ||||| ||||||||  ||||||| |||||| |||||||| |||||||||  |||||||| | |||    || ||||| |||    
T  1058995 caaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgca 1058896  T
Q  662 actataaaagtgccattgaaggcttttctcattggcaccaagctgtgaagacattcaactttttcagtaatagttttcattcttggttccaccatgtgac 761  Q
     | |  |||||||| |||||||| |||||||| ||||| | |||||||   ||||||| | ||||| ||| |||||||||||||||||||||||  ||||    
T  1058895 gccaggaaagtgcctttgaaggcctttctcatcggcacaaggctgtgagagcattcaattctttcattaacagttttcattcttggttccaccacatgac 1058796  T
Q  762 agtaaagaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattctccatattctgcgaaaggcgataa 861  Q
    |||||||||||   |||||| ||||||||||| |||||||||| |||||||||   ||||| |||||| |||||||| |||||||||  ||||| |||||    
T  1058795 agtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataa 1058696  T
Q  862 tctaattccaactctttctgcacctatctcattcacaacagcttcaacaatttccaaa 919  Q
    ||||||||||  ||| |||||||||||||||||  ||||||||||||||| |||||||    
T  1058695 tctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaa 1058638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 125; E-Value: 9e-64
Query Start/End: Original strand, 462 - 994
Target Start/End: Complemental strand, 1047158 - 1046620
Alignment:
Q  462 caagaaaagggtaatctgtataaccgagaaccggatcagatgtgtagaatgtttcccggttatacttgttgagaggagcatcgagcgcgaatctctttgg 561  Q
    ||||||||||||| || |||||||| ||||| |||||||| ||| ||||||| |||   ||||||||||| || |||||||  || || |||||||||||    
T  1047158 caagaaaagggtagtcggtataaccaagaactggatcagaagtgcagaatgtctccatattatacttgtttaggggagcattaagtgcaaatctctttgg 1047059  T
Q  562 taaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaactatggcatcaatcccatcttgtcgcgaatagcctccggca 661  Q
     ||||||||||||| ||| || || ||  | |||||||||||||||  | |||||||| |||| ||||  ||||| ||| |||    ||||| ||||| |    
T  1047058 caaatctggattagctatgaataaacggtcgtaagcaacaagatctaccctattttcagctatagcattgatcccgtctagtctttcatagcttccggta 1046959  T
Q  662 actataaaagtgccattgaaggcttttctcattggcaccaagctgtgaagacattcaactttttcagtaatagttt---tcattcttggttccaccatgt 758  Q
    || || |||||||||||||| || ||||||| |||||||||| ||||||||||||    ||| |||  ||||||||   |  || ||  ||| ||||| |    
T  1046958 accatgaaagtgccattgaaagcctttctcactggcaccaagttgtgaagacattttgttttatcatcaatagtttcattacttattcattctaccatat 1046859  T
Q  759 gacagtaaagaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctccacattctccatattctgcgaaaggcga 858  Q
    |||| || ||||||   |||||| |||||||||||||||| |||||||||||| | |  ||||| ||||||||||||||| |  | ||||  ||||| ||    
T  1046858 gacaatacagaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccacattcttcgaaatctgaaaaaggtga 1046759  T
Q  859 taatctaattccaactctttctgcacctatctcattcacaacagcttcaacaatttccaaagcgaatcgacaac-gttttcaag-tttccgccgtattta 956  Q
    || | | |||||||||||||| ||||| |||||||| |||||||||||||||||||||||| | |||  ||||| |||||||||  |||| || |||| |    
T  1046758 tagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaaatttacaacggttttcaagagttccaccatattca 1046659  T
Q  957 tcagttc-gtcattcactttatctttcataaattgctca 994  Q
    || |||| ||||||||||||||||||||| |||||||||    
T  1046658 tctgttctgtcattcactttatctttcatgaattgctca 1046620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 1638600 - 1638674
Alignment:
Q  112 tgtattatggatacataaattgaaaacatgggacatatcaccataaaggatgaatataatcatgagtttctctca 186  Q
    ||||||||| ||||||||||||||||| | ||| |||||||||||||||||| || |||| ||||||||| ||||    
T  1638600 tgtattatgaatacataaattgaaaacttcggaaatatcaccataaaggatgcatctaatgatgagtttccctca 1638674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 3780976 - 3781016
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  3780976 tactccctccgtctttaaatataagcaaaattgacttttta 3781016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 5787475 - 5787515
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  5787475 tactccctccgtctttaaatataagcaaaattgacttttta 5787515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 21344593 - 21344553
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  21344593 tactccctccgtctttaaatataagcaaaattgacttttta 21344553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 40914109 - 40914149
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  40914109 tacttcctccattttttaatataagcaaaattgacttttta 40914149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 25837651 - 25837622
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  25837651 tctttaaatataagcaaaattgacttttta 25837622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 38507989 - 38507960
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  38507989 tctttaaatataagcaaaattgacttttta 38507960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 3e-17; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 860 - 918
Target Start/End: Original strand, 44171260 - 44171318
Alignment:
Q  860 aatctaattccaactctttctgcacctatctcattcacaacagcttcaacaatttccaa 918  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  44171260 aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaa 44171318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 860 - 918
Target Start/End: Original strand, 44191556 - 44191614
Alignment:
Q  860 aatctaattccaactctttctgcacctatctcattcacaacagcttcaacaatttccaa 918  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  44191556 aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaa 44191614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 55198743 - 55198679
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttttatttaatgatgtatgtggtccatatt 105  Q
    |||| ||||| | |||||||||||| |||||||||||| |||| ||||||||||||||||||||||    
T  55198743 tactccctccgtttttaaatataagtaaaattgactttatatt-aatgatgtatgtggtccatatt 55198679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 29726422 - 29726378
Alignment:
Q  36 aaactacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  29726422 aaactactccctccgtctttaaatataagcaaaattgacttttta 29726378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 29726514 - 29726470
Alignment:
Q  36 aaactacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  29726514 aaactactccctccgtctttaaatataagcaaaattgacttttta 29726470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 29726606 - 29726562
Alignment:
Q  36 aaactacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  29726606 aaactactccctccgtctttaaatataagcaaaattgacttttta 29726562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 7328780 - 7328747
Alignment:
Q  47 tccatctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||||||    
T  7328780 tccatctttaaatataagcaaaattgacttttta 7328747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 551 - 616
Target Start/End: Original strand, 12121342 - 12121407
Alignment:
Q  551 aatctctttggtaaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattt 616  Q
    |||||| |||| ||||||||||||| ||  ||||| ||||||||| |||||||||||| |||||||    
T  12121342 aatctcattggcaaatctggattagctaagaacaaacgaccataaacaacaagatctgccttattt 12121407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 14626772 - 14626732
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  14626772 tactccctccgtctttaaatataagcaaaattgacttttta 14626732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 29726286 - 29726326
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  29726286 tactccctccatgtttaaatataagcaaaattgacttttta 29726326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 32956414 - 32956454
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  32956414 tacttcctccgtttttaaatataagcaaaattgacttttta 32956454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 46967601 - 46967561
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  46967601 tactccctccgtctttaaatataagcaaaattgacttttta 46967561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 39530539 - 39530500
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttt 79  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  39530539 tactccctccatttttaaatataagcaaaattgacttttt 39530500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 54008354 - 54008311
Alignment:
Q  37 aactacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    ||||||| ||||| | ||||||||||||||||||||||||||||    
T  54008354 aactactccctccgtttttaaatataagcaaaattgacttttta 54008311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 24312991 - 24312962
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  24312991 tctttaaatataagcaaaattgacttttta 24312962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 37331732 - 37331703
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  37331732 tctttaaatataagcaaaattgacttttta 37331703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 43883855 - 43883896
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttttat 81  Q
    |||||||||||| |||||||||||| |||||||| |||||||    
T  43883855 tacttcctccatttttaaatataagtaaaattgattttttat 43883896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 41569645 - 41569605
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  41569645 tacttcctccgtctttaaatataagcaaaattgacttttta 41569605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 17922147 - 17922185
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttt 78  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  17922147 tacttcctccgtctttaaatataagcaaaattgattttt 17922185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 36721864 - 36721815
Alignment:
Q  53 tttaaatataagcaaaattgactttttatttaatgatgtatgtggtccatatt 105  Q
    |||||||||||||||||||||   |||||||||| ||||||||||||||||||    
T  36721864 tttaaatataagcaaaattga---tttatttaataatgtatgtggtccatatt 36721815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 48088006 - 48088047
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttttat 81  Q
    |||||||||| | |||||||||||||||||||||||||||||    
T  48088006 tacttcctccgtttttaaatataagcaaaattgactttttat 48088047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 55616958 - 55616920
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttt 78  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  55616958 tactccctccatctttaaatataagcaaaatttactttt 55616920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 55624262 - 55624224
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttt 78  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  55624262 tactccctccatctttaaatataagcaaaatttactttt 55624224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 39923953 - 39923924
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  39923953 tctttaaatataagcaaaattgacttttta 39923924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 46495675 - 46495638
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttt 77  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  46495675 tactccctccatttttaaatataagcaaaattgacttt 46495638  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 48088139 - 48088098
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttttat 81  Q
    |||| ||||| | |||||||||||||||||||||||||||||    
T  48088139 tactccctccgtttttaaatataagcaaaattgactttttat 48088098  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 49632324 - 49632353
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  49632324 tctttaaatataagcaaaattgacttttta 49632353  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 51394094 - 51394135
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgactttttat 81  Q
    |||||||||| | |||||||||||| ||||||||||||||||    
T  51394094 tacttcctccgtttttaaatataagtaaaattgactttttat 51394135  T

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Target: scaffold0136 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 22592 - 22548
Alignment:
Q  36 aaactacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||| |||| || ||||||||||||||||||||||||||||    
T  22592 aaactactccctctatttttaaatataagcaaaattgacttttta 22548  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 5082672 - 5082712
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  5082672 tactccctccgtctttaaatataagcaaaattgacttttta 5082712  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 25099532 - 25099572
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  25099532 tactccctccgtctttaaatataagcaaaattgacttttta 25099572  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 25250153 - 25250193
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  25250153 tactccctccatcttttaatataagcaaaattgacttttta 25250193  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 26154059 - 26154019
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  26154059 tactccctccgtctttaaatataagcaaaattgacttttta 26154019  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 42644211 - 42644171
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  42644211 tacttcctccgtctttaaatataagtaaaattgacttttta 42644171  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 5639690 - 5639661
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  5639690 tctttaaatataagcaaaattgacttttta 5639661  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 36399902 - 36399931
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  36399902 tctttaaatataagcaaaattgacttttta 36399931  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 39976051 - 39976080
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  39976051 tctttaaatataagcaaaattgacttttta 39976080  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 4156483 - 4156443
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  4156483 tactccctccatttttaaatataagcaaaattgacttttta 4156443  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 78
Target Start/End: Complemental strand, 28542430 - 28542397
Alignment:
Q  45 cctccatctttaaatataagcaaaattgactttt 78  Q
    ||||| ||||||||||||||||||||||||||||    
T  28542430 cctccgtctttaaatataagcaaaattgactttt 28542397  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 3463294 - 3463254
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  3463294 tactccctccatctttaaatataagtaaaattgacttttta 3463254  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 12017755 - 12017795
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  12017755 tactacctccgtctttaaatataagcaaaattgacttttta 12017795  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 33363703 - 33363663
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  33363703 tactccctccgtctttaaatataagcaaaattgacttttta 33363663  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 42230518 - 42230558
Alignment:
Q  40 tacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  42230518 tactccctccgtctttaaatataagcaaaattgacttttta 42230558  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 551 - 618
Target Start/End: Complemental strand, 65933 - 65866
Alignment:
Q  551 aatctctttggtaaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttc 618  Q
    ||||||||||| |||| |||||||| ||  ||| | ||||||||| |||||||||||| |||||||||    
T  65933 aatctctttggcaaatttggattagctaagaacgaacgaccataaacaacaagatctgccttattttc 65866  T

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Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 80
Target Start/End: Original strand, 37215178 - 37215208
Alignment:
Q  50 atctttaaatataagcaaaattgacttttta 80  Q
    |||||||||||||||||||||||||||||||    
T  37215178 atctttaaatataagcaaaattgacttttta 37215208  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 40094322 - 40094364
Alignment:
Q  38 actacttcctccatctttaaatataagcaaaattgacttttta 80  Q
    |||||| ||||| | ||||||||||||||||||||||||||||    
T  40094322 actactccctccgtgtttaaatataagcaaaattgacttttta 40094364  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 17622770 - 17622799
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  17622770 tctttaaatataagcaaaattgacttttta 17622799  T

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Target: scaffold0305 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 80
Target Start/End: Complemental strand, 16919 - 16890
Alignment:
Q  51 tctttaaatataagcaaaattgacttttta 80  Q
    ||||||||||||||||||||||||||||||    
T  16919 tctttaaatataagcaaaattgacttttta 16890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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