View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3023-Insertion-10 (Length: 266)

Name: NF3023-Insertion-10
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3023-Insertion-10
NF3023-Insertion-10
[»] chr5 (1 HSPs)
chr5 (5-238)||(5006599-5006829)
[»] chr7 (4 HSPs)
chr7 (117-228)||(46383476-46383584)
chr7 (116-192)||(36777898-36777974)
chr7 (116-228)||(24912084-24912192)
chr7 (152-192)||(4225730-4225770)
[»] chr1 (1 HSPs)
chr1 (116-209)||(47377626-47377718)
[»] chr3 (2 HSPs)
chr3 (116-166)||(42913312-42913362)
chr3 (119-177)||(46103765-46103823)
[»] chr4 (1 HSPs)
chr4 (117-153)||(31350315-31350351)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 5006599 - 5006829
Alignment:
Q  5 acatgcggacactctgacactcaagtcgataaagagcagaggtgtgagggttttaggcggatccatgattaatttttggtgtggctaaaacaataaagta 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  5006599 acatgcggacactctgacactcaagtcgataaagagcagaggtgtgagggttttaggtggacccatgattaatttttggtgtggctaaaacaataaagta 5006698  T
Q  105 atcnnnnnnnnttgctcaatgaaattaaagactatactatttatttcaaaataacagttttagtagttttatttcagcaaattttattggtctatgtcta 204  Q
    ||         |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5006699 at-aaaaaaaattgctcaatgaaattaaagacta--ctatttatttcaaaataacagttttagtagttttatttgagcaaattttattggtctatgtcta 5006795  T
Q  205 tttattataactctaacaattgttgatttaagac 238  Q
    ||||||||||||||||||||||||||||||||||    
T  5006796 tttattataactctaacaattgttgatttaagac 5006829  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 46383476 - 46383584
Alignment:
Q  117 tgctcaatgaaattaaagactatactatttatttcaaaataacagttttagtagttttatttcagcaaattttattggtctatgtctatttattataact 216  Q
    ||||||||||||||||||| | |||||||| ||| |||||||||||||||||  ||||||||  |||||||||| | || |||||||||   |||||||     
T  46383476 tgctcaatgaaattaaagattgtactatttcttttaaaataacagttttagttattttatttgggcaaattttactagtttatgtctat---ttataacc 46383572  T
Q  217 ctaacaattgtt 228  Q
    ||||||||||||    
T  46383573 ctaacaattgtt 46383584  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 36777974 - 36777898
Alignment:
Q  116 ttgctcaatgaaattaaagactatactatttatttcaaaataacagttttagtagttttatttcagcaaattttatt 192  Q
    |||||||||||||||||||||||||||||||  || |||| || ||||||||||||||| ||| |||||||||||||    
T  36777974 ttgctcaatgaaattaaagactatactatttcattgaaaacaatagttttagtagttttgtttgagcaaattttatt 36777898  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 24912084 - 24912192
Alignment:
Q  116 ttgctcaatgaaattaaagactatactatttatttcaaaataacagttttagtagttttatttcagcaaattttattggtctatgtctatttattataac 215  Q
    |||||||||||||||||| ||||||||||||   ||||||||||| |||||||| ||||||||  |||||  ||||| || ||||||    |||||||||    
T  24912084 ttgctcaatgaaattaaaaactatactatttcaatcaaaataacatttttagtaattttatttgggcaaaaattattagtgtatgtc----tattataac 24912179  T
Q  216 tctaacaattgtt 228  Q
     ||||||||||||    
T  24912180 cctaacaattgtt 24912192  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 4225770 - 4225730
Alignment:
Q  152 aaaataacagttttagtagttttatttcagcaaattttatt 192  Q
    ||||||| ||||||||||||||||||| ||| |||||||||    
T  4225770 aaaataatagttttagtagttttatttgagctaattttatt 4225730  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 47377718 - 47377626
Alignment:
Q  116 ttgctcaatgaaattaaagactatactatttatttcaaaataacagttttagtagttttatttcagcaaattttattggtctatgtctatttat 209  Q
    ||||||||| ||||||||||| ||| |||||  ||||||||||||| ||||||||||||||||  |||| ||||||| |   ||||||||||||    
T  47377718 ttgctcaattaaattaaagacgatattatttcattcaaaataacag-tttagtagttttatttgggcaagttttattagctcatgtctatttat 47377626  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 42913312 - 42913362
Alignment:
Q  116 ttgctcaatgaaattaaagactatactatttatttcaaaataacagtttta 166  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||||||||    
T  42913312 ttgctcaatgaaattaaaaactaaactatttcattcaaaataacagtttta 42913362  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 46103823 - 46103765
Alignment:
Q  119 ctcaatgaaattaaagactatactatttatttcaaaataacagttttagtagttttatt 177  Q
    ||||||||||||||||||||||||||||  || |||||| || ||||| ||||||||||    
T  46103823 ctcaatgaaattaaagactatactatttcatttaaaatatcatttttaatagttttatt 46103765  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 31350315 - 31350351
Alignment:
Q  117 tgctcaatgaaattaaagactatactatttatttcaa 153  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  31350315 tgctcaatgaaattaaacactatactatttctttcaa 31350351  T

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