View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3023-Insertion-2 (Length: 743)
Name: NF3023-Insertion-2
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023-Insertion-2 |
 | |
|
| [»] chr1 (12 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 692; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 8 - 743
Target Start/End: Complemental strand, 7488198 - 7487463
Alignment:
| Q |
8 |
gaacccaacaactagagaggtccatcgtgttcctccgagtctctgccttgacaacgactcatgcatgtatggttttggtgccgatgatcccaacaacatc |
107 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7488198 |
gaaccctacaactagagaggtccaccgtgttcctccgagtctctgccttgataacgactcatgcatgtatggtttcggtgccgatgatcccaacaacatc |
7488099 |
T |
|
| Q |
108 |
aacttcaaagttgtgaaactccatactagttatggtggaactatgagatcagcggaagtttataatttaagtaccaactcttggaccccaactgaacatc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7488098 |
aacttcaaagttgtgaaactccatactagttatggtggaactatgagatcagcggaagtttataatttaagtaccaactcttggaccccaactgaacatc |
7487999 |
T |
|
| Q |
208 |
ctcttccttgtactaagatcacacaccaatgtccgtctagatataacactcttgttaacaccgtttatcattggattataagcagttcatacggcaatcg |
307 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7487998 |
ctcttccttttactaagatcacacgccaatgtccgtccagatataacactcttgttaacaccgtttatcattggattataagcagttcatacggcaatcg |
7487899 |
T |
|
| Q |
308 |
ccattttgttgcaaatattctatgctttgacttccgcgacaaccagtttcaccaactcagagggccaaccttctcatgtgactatcgcaactttgcatgg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7487898 |
ccattttgttgcaaatattctatgctttgacttccgcgacaaccagtttcaccaactcagagggccaaccttctcatgtgactatcgcaactttgcatgg |
7487799 |
T |
|
| Q |
408 |
gatggtgttgccgagatcaaaggttcccttgcttatgttgtgcattgtaacttcaatgctcccgttgtcttgagcatttgggtgatggatcaaagtggat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7487798 |
gatggtgttgccgagatcaaaggttcccttgcttatgttgtgcattgtaacttcaatgctcccgttgtcttgagcatttgggtgatggatcaaagtggat |
7487699 |
T |
|
| Q |
508 |
ggcacaaaaggtgcaacattggcccacttgtgacaatgtttcgtatgtgtggcctttggaagaatggcgatcaaatccttggaggaaaggttggagaacc |
607 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7487698 |
ggcacaaaaagtgcaacattggcccacttgtgtcaatgtttcgtatgtgtggcctttggaagaatggcgatcaaatccttggaggaaaggttggagaacc |
7487599 |
T |
|
| Q |
608 |
gctcacatcgtatgactatcaaggcagatcactttaccaatttcaaattgatgttgattatactaaatttcatgagtatgtgccaagcatagctcccttg |
707 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7487598 |
actcacatcgtatgactatcaaggcaaatcactttaccaatttcaaattgatgttgattatactaaatttcatgagtatgtgccaagcatagctcccttg |
7487499 |
T |
|
| Q |
708 |
tcaatctagatagctaggacaccaaactaggatata |
743 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
7487498 |
tcaatctagatagctaggacaccaaactaggatata |
7487463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 328 - 740
Target Start/End: Original strand, 7873472 - 7873887
Alignment:
| Q |
328 |
tatgctttgacttccgcgacaaccagtttcaccaactcagagggccaaccttctcatgtgactatcgcaactttgcatgggatggtgttgccgagatcaa |
427 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| ||| | ||||| ||| | | |||| |||||||||||| || |
|
|
| T |
7873472 |
tatgctttgactttcgcaacaaccagtttcacgaactcagagggccaaccttctcagttgaagaccgcaaatttctacgcgatgatgttgccgagattaa |
7873571 |
T |
|
| Q |
428 |
aggttcccttgcttatgttgtgcattgtaacttcaatgctcccgttgtcttgagcatttgggtgatggatcaaagtggatggcacaaaaggtgcaacatt |
527 |
Q |
| |
|
||||||||||||||||||||||| | ||||| || |||| || || | || ||||||||| ||||||||||||||||||||||||| || ||||||| |
|
|
| T |
7873572 |
gggttcccttgcttatgttgtgcagcatcacttcgattctcctgtcgtttcgaacatttgggtaatggatcaaagtggatggcacaaaaagtacaacatt |
7873671 |
T |
|
| Q |
528 |
---ggcccacttgtgacaatgtttcgtatgtgtggcctttggaagaatggcgatcaaatccttggaggaaaggttggagaaccgctcacatcgtatgact |
624 |
Q |
| |
|
||||||| |||| |||||| ||||||| ||||||||||||||||||||| || |||||||||||||| ||||||||||||||| ||| |||||| |
|
|
| T |
7873672 |
attggcccacctgtgtcaatgtctcgtatgctcggcctttggaagaatggcgatgaactccttggaggaaagtttggagaaccgctcaaatcatatgacc |
7873771 |
T |
|
| Q |
625 |
atcaaggcagatcactttaccaatttcaaattgatgttgattatactaaatttcatgagtatgtgccaagcatagctcccttgtcaatctagatagctag |
724 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||| || || | ||||||| | | |||||||||||||||||||| |||||||||| | |||||| ||| |
|
|
| T |
7873772 |
atcaaggcaactcactttgccaatttcaaattgattttcataagactaaatattaagagtatgtgccaagcatagcccccttgtcaaccaagataggtag |
7873871 |
T |
|
| Q |
725 |
gacaccaaactaggat |
740 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7873872 |
gacaccaaactaggat |
7873887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 404 - 743
Target Start/End: Complemental strand, 7495277 - 7494929
Alignment:
| Q |
404 |
atgggatggtgttgccgagatcaaaggttcccttgcttatgttgtgcattgtaacttcaatgctcccgttgtcttgagcatttgggtgatggatcaaagt |
503 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||| | || |||||||||| || |||||| ||||||||| |||||||||||| |
|
|
| T |
7495277 |
atgggataatgttgccgagatcaagggttcccttgcttatgttgtgcagaatcacgtcaatgctcctgtcgtcttgcacatttgggtaatggatcaaagt |
7495178 |
T |
|
| Q |
504 |
ggatggcacaaaaggtgcaacattggcccacttgtgacaatgtttcgtatgtgtggcctttggaagaatggcgatcaaatccttggaggaaaggttggag |
603 |
Q |
| |
|
|||||| |||| || |||||||||||| || | |||||||||| |||| |||||||||||||||| || ||||| |||||||||||||| ||||| |
|
|
| T |
7495177 |
ggatggagaaaaatgtataacattggcccagttttttcaatgtttcgcatgtttggcctttggaagaatagcaatcaactccttggaggaaagtttggaa |
7495078 |
T |
|
| Q |
604 |
aaccgctcacatcgtatgactatcaaggcagatcactttaccaatttcaaattgatgttgattatactaaa---------tttcatgagtatgtgccaag |
694 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
7495077 |
aaccgctcacatcatatgaccatcaaggcaactcactttgccaatttcaaattgatgttgatgatactgaacatttttggattcatgagtatgtgccaag |
7494978 |
T |
|
| Q |
695 |
catagctcccttgtcaatctagatagctaggacaccaaactaggatata |
743 |
Q |
| |
|
||||||||| ||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
7494977 |
catagctcctttgtctaccaagatagctaggacaccaaactaggatata |
7494929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 314 - 669
Target Start/End: Complemental strand, 7475010 - 7474663
Alignment:
| Q |
314 |
tgttgcaaatattctatgctttgacttccgcgacaaccagtttcaccaactcagagggccaaccttctcatgtgactatcgcaactttgcatgggatggt |
413 |
Q |
| |
|
|||||||||||| ||||||||| |||| || |||| || ||||||||||| ||||| ||||||||||| | | | || |||| |||||||| |
|
|
| T |
7475010 |
tgttgcaaatatcctatgctttaactttcgaaacaatcaatttcaccaact--gaggggcaaccttctcagttaaagaccgatgctttctatgggatgac |
7474913 |
T |
|
| Q |
414 |
gttgccgagatcaaaggttcccttgcttatgttgtgcattgtaacttcaatgctcccgttgtcttgagcatttgggtgatggatcaaagtggatggcaca |
513 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||| | || | || | ||| || |||||||| |||||||| ||||||||| | | |
|
|
| T |
7474912 |
gttgccgagatcaaaggctccctttcttatgttgtgcattgtcattttactgattgcgt------gaaaatttgggtaatggatcatagtggatgggaga |
7474819 |
T |
|
| Q |
514 |
aaaggtgcaacattggcccacttgtgacaatgtttcgtatgtgtggcctttggaagaatggcgatcaaatccttggaggaaaggttggagaaccgctcac |
613 |
Q |
| |
|
||| || ||||||| || || ||||| |||||||||||||| | || |||||||||||||| |||||| ||||||||||||||| |||| | | ||| | |
|
|
| T |
7474818 |
aaaagtacaacattagctcaattgtgccaatgtttcgtatgggcggtctttggaagaatggtgatcaactccttggaggaaaggatggaaagtccctcgc |
7474719 |
T |
|
| Q |
614 |
atcgtatgactatcaaggcagatcactttaccaatttcaaattgatgttgattata |
669 |
Q |
| |
|
||| |||||| || |||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
7474718 |
atcatatgaccatgaaggcaactcactttgccaatttcaaattgatgttgattata |
7474663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 546 - 675
Target Start/End: Original strand, 6944389 - 6944518
Alignment:
| Q |
546 |
tttcgtatgtgtggcctttggaagaatggcgatcaaatccttggaggaaaggttggagaaccgctcacatcgtatgactatcaaggcagatcactttacc |
645 |
Q |
| |
|
||||| ||||| || ||||||||||| || |||||| |||||||||||| || |||||||| ||||| ||| |||||| ||||||||| ||||||| || |
|
|
| T |
6944389 |
tttcgaatgtgcggtctttggaagaacggggatcaactccttggaggaagggctggagaactgctcagatcatatgaccatcaaggcaactcactttgcc |
6944488 |
T |
|
| Q |
646 |
aatttcaaattgatgttgattatactaaat |
675 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
6944489 |
aatttcaaattgatgttgattatgctaaat |
6944518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 7475328 - 7475205
Alignment:
| Q |
8 |
gaacccaacaactagagaggtccatcgtgttcctccgagtctctgccttgacaacgactcatgcatgtatggttttggtgccgatgatcccaacaacatc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| || | | |||||| || | | | |||| ||||||||||||||||| |||||||| |||| ||| |
|
|
| T |
7475328 |
gaacccaacaactagagaggtccatcgtattccccctactagctgcctcgataccaaatcatctatgtatggttttggtgcagatgatccaaacatcatt |
7475229 |
T |
|
| Q |
108 |
aacttcaaagttgtgaaactccat |
131 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
7475228 |
gatttcaaagttgtgaaactccat |
7475205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 690 - 743
Target Start/End: Original strand, 7497068 - 7497121
Alignment:
| Q |
690 |
ccaagcatagctcccttgtcaatctagatagctaggacaccaaactaggatata |
743 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
7497068 |
ccaaacatagctcccttgtcaatctagctagctaggacaccacactaggatata |
7497121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 379
Target Start/End: Original strand, 6944049 - 6944225
Alignment:
| Q |
206 |
tcctcttccttgtactaagatcacacaccaatgtccgtctagatataacactcttgttaacaccgtttatcattggattataagcagttcatacggcaat |
305 |
Q |
| |
|
||||| ||||| ||||| ||||||| |||||||| | | ||||||||||||||||||| ||||||||||||||||| || | ||||| | | || |
|
|
| T |
6944049 |
tcctcctccttttactatcatcacacgtcaatgtcccttcaaatataacactcttgttaacggcgtttatcattggattacaaaaaattcattctaccat |
6944148 |
T |
|
| Q |
306 |
cgccattttg---ttgcaaatattctatgctttgacttccgcgacaaccagtttcaccaactcagagggccaacctt |
379 |
Q |
| |
|
||| || || |||||||||| |||||||| |||| ||| || | || |||||||||||||||||||||||||| |
|
|
| T |
6944149 |
cgctatgatggtgttgcaaatatcttatgctttaactttcgcaacgatcaatttcaccaactcagagggccaacctt |
6944225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 7873373 - 7873422
Alignment:
| Q |
236 |
atgtccgtctagatataacactcttgttaacaccgtttatcattggatta |
285 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7873373 |
atgtccttctagatataacactcttgttaacggcgtttatcattggatta |
7873422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 677 - 711
Target Start/End: Complemental strand, 7483633 - 7483599
Alignment:
| Q |
677 |
tcatgagtatgtgccaagcatagctcccttgtcaa |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7483633 |
tcatgagtatgtgccaagcatagctcccttgtcaa |
7483599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 285
Target Start/End: Complemental strand, 7495516 - 7495390
Alignment:
| Q |
159 |
gcggaagtttataatttaagtaccaactcttggaccccaactgaacatcctcttccttgtactaagatcacacaccaatgtccgtctagatataacactc |
258 |
Q |
| |
|
||||||||||||||| ||||||| || | |||||||| ||| ||||||||| ||||| |||| ||||| | ||| |||| |||| ||| ||||||| |
|
|
| T |
7495516 |
gcggaagtttataatctaagtactaaattatggacccctactcaacatcctcatcctttaactatcatcacgcgtcaacgtccttctaaatacaacactc |
7495417 |
T |
|
| Q |
259 |
ttgttaacaccgtttatcattggatta |
285 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
7495416 |
ttgttaatggtgtttatcattggatta |
7495390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 6943898 - 6943953
Alignment:
| Q |
73 |
tgtatggttttggtgccgatgatcccaacaacatcaacttcaaagttgtgaaactc |
128 |
Q |
| |
|
|||||||||| ||||| |||||| |||||| |||| | |||||||||||||||||| |
|
|
| T |
6943898 |
tgtatggtttcggtgctgatgattccaacatcatcgatttcaaagttgtgaaactc |
6943953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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