View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3023-Insertion-3 (Length: 700)

Name: NF3023-Insertion-3
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3023-Insertion-3
NF3023-Insertion-3
[»] chr7 (1 HSPs)
chr7 (8-700)||(439970-440663)
[»] chr6 (1 HSPs)
chr6 (568-700)||(24414386-24414515)


Alignment Details
Target: chr7 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 8 - 700
Target Start/End: Complemental strand, 440663 - 439970
Alignment:
Q  8 atttcttgtgtcattcttttgctataagtatatgccttatgcgtctattgacgttgttgtcttttgagaacttggatgtaatttagttatgcctccacat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  440663 atttcttgtgtcattcttttgctataagtatatgccttatgcgtctattgacgttgttgtcttttgagaacttggatgtagtttagttatgcctccacat 440564  T
Q  108 gaatcaattagctattgagtttaaacataataaaagcttgagaagagaaattggattgcagatttatgaacagatactgaattttggaacct-aagtctc 206  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||    
T  440563 gaatcaattagctattgagtctaaacataataaaagcttgagtagagaaattggattgcatatttaagaacagatactgaattttggaacctcaagtctc 440464  T
Q  207 tctccagtaagatctatcttgaatcaagaaccacataaagcttttgccaatatcagaaatatagacaatacacatcttgttagcagtacttctgctaagt 306  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  440463 tctccggtaagatctatcttgaatcaagaaccacataaagcttttgctaatatcagaaatatagacaatacacatcttgttagcagtacttctgctaagt 440364  T
Q  307 ggatgattttggtaattgataaagtagattgtaaccatccttgtgtttatattgttgaatagcaggattattctctagtggagtgaaactctgcacagaa 406  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  440363 ggatgattttggtaattgataaagtatattgtaaccatccttgtgtttatattgttgaatagcagaattattctctagtggagtgaaactctgcacagaa 440264  T
Q  407 gaaagcttgct-ttttcaccatactcacattctttggttgaagagcgaacagcggacttggtattttgccaaactgagcaatgtgagctataactatttt 505  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  440263 gaaagcttgcttttttcaccatactcacattctttggttgaagagcgaacagtggacttggtattttgccaaactgagcaatgtgagctataactatttt 440164  T
Q  506 tgtttggagctttgagttgtggaatctaaaatagaattcaaacacttgcannnnnnnatcatgtatttttctgcttgaaaagatttgaggtgtgagtaat 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  440163 tgtttggagctttgagttgtggaatctaaaatagaattcaaacacttgca-ttttttatcatgtatttttctgcttgaaaagatttgaggtgtgagtaat 440065  T
Q  606 ttaaacttgtttagatttctacatcatatttctgatactttcccgtttgtaatctgttaagtggttttgatgattaataattaacatggccctga 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  440064 ttaaacttgtttagatttctacatcatatttctgatactttcccgtttgtaatctgttaagtggttttgatgattaataattaacatggccctga 439970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 568 - 700
Target Start/End: Complemental strand, 24414515 - 24414386
Alignment:
Q  568 gtatttttctgcttgaaaagatttgaggtgtgagtaatttaaacttgtttagatttctacatcatatttctgatactttcccgtttgtaatctgttaagt 667  Q
    |||||||||||||||||||||||||||||| |||||||||||||||   ||||||||| ||||||||||||||||||||||| ||||| |||||||||||    
T  24414515 gtatttttctgcttgaaaagatttgaggtgcgagtaatttaaactt---tagatttctgcatcatatttctgatactttcccctttgtgatctgttaagt 24414419  T
Q  668 ggttttgatgattaataattaacatggccctga 700  Q
    ||||||||||| |||||||||||||||||||||    
T  24414418 ggttttgatgactaataattaacatggccctga 24414386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University