View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3023-Insertion-4 (Length: 673)
Name: NF3023-Insertion-4
Description: NF3023
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3023-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 8 - 533
Target Start/End: Complemental strand, 27771614 - 27771086
Alignment:
| Q |
8 |
aactctagttgtcctctatgtcgttctagcgtattcacttcgaatgcttcaatacacaatgttcaagttcccgcgacggttatagaacttccttcaagaa |
107 |
Q |
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| T |
27771614 |
aactctagttgtcctctatgtcgttctagcgtattcacttcgaatgcttcaacacatcatgttcaagttccggttacaattatagaacttccttcaagaa |
27771515 |
T |
|
| Q |
108 |
ctgaaactttttcagaaga---acaaatagttatggaagaagcaatgattcatcatagtagagttgattcaaaggcgccttcattgcgcgcttttagtga |
204 |
Q |
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| T |
27771514 |
atgaaacttttttagaagagcaacaaatagttgtggaagaagcaatgatgcaacatagtagagttgagtcgaaggcgccatcattgcgcgcttttagtga |
27771415 |
T |
|
| Q |
205 |
tttgtgtaatttgcaaggaagagaaagaataatcgaaattagagacgaagtttgtgaatcgatcggaaggtcagtgtctatggatcattcatttcaaaat |
304 |
Q |
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| T |
27771414 |
tttgtgtaatttgcaaggaagagaaagaataatcgaaattagagacgaagtttgtgaatcgatcggaaggtcagtgtctatggatcattcatttcaaaat |
27771315 |
T |
|
| Q |
305 |
ggtttttcaattggtgatgtgttgaatatgaatgaagatgaagatgattcttgtgaagaaggatgttcaatggatgttagttcatcaaagatatcacaag |
404 |
Q |
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| T |
27771314 |
ggtttttcaattggtgatgtgttgaatatgaatgaagatgaagatgattcttgtgaagaaggatgttcaatggatgttagttcatcaaagatatcacaag |
27771215 |
T |
|
| Q |
405 |
gagaaggtagtaaatcaaggtacaaaagaagagtgttgcattgtgttatgagtccaattgcaatgaagagatcgttttctaatggaagattttcactagg |
504 |
Q |
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| T |
27771214 |
gagaaagtagtaaatcaaggtacaaaagaagagtgttgcattgtgttatgagtccaattgcaatgaagagatcgttttctaatggaagattttcacttgg |
27771115 |
T |
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| Q |
505 |
taaaattgatagaggaaaaaggcaaggaa |
533 |
Q |
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| T |
27771114 |
taaaattgatagaggaaaaaggcaaggaa |
27771086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 582 - 634
Target Start/End: Complemental strand, 27771038 - 27770986
Alignment:
| Q |
582 |
atgatatattaagaagagagatagaccaattttttgtgtgaagattgcataaa |
634 |
Q |
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| T |
27771038 |
atgatatattaagaagagagacagaccaattttttgtgtgaagattgcataaa |
27770986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 497
Target Start/End: Complemental strand, 12617343 - 12617286
Alignment:
| Q |
440 |
ttgcattgtgttatgagtccaattgcaatgaagagatcgttttctaatggaagatttt |
497 |
Q |
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| T |
12617343 |
ttgcattgtgtgctaagtccaattgcaatgaagagatcattttcaagtggaagatttt |
12617286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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